2uy6 - Revision history

OCA at 14:57, 13 December 2023

OCA — Wed, 13 Dec 2023 14:57:38 GMT

←Older revision		Revision as of 14:57, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2uy6' size='340' side='right'caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2uy6' size='340' side='right'caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~] and [https://en.wikipedia.org/wiki/~~Ecout Ecout~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_UTI89 Escherichia coli UTI89]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1n0l\|1n0l]]~~, [[~~1pdk~~\|~~1pdk~~]]~~, [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [https://pdbe.org/2uy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [https://pdbe.org/2uy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~PAPA_ECOLX PAPA_ECOLX~~]] Polymerizes to form the thick (6.8 nm in diameter) rod of the pilus (also called fimbria). The rod is a right-handed helical cylinder with 3.28 PapA subunits per turn. Pili are polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, and enable bacteria to colonize the epithelium of specific host organs.	+	[https://www.uniprot.org/uniprot/Q1R2W9_ECOUT Q1R2W9_ECOUT]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
-	[[Category: ~~Ecout~~]]	+	[[Category: Escherichia coli UTI89]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bullitt, E]]	+	[[Category: Bullitt E]]
-	[[Category: Hultgren~~, S J~~]]	+	[[Category: Hultgren SJ]]
-	[[Category: Verger, D]]	+	[[Category: Verger D]]
-	[[Category: Waksman, G]]	+	[[Category: Waksman G]]
-	~~[[Category: Chaperone]]~~	+
-	~~[[Category: Donor strand complementation]]~~	+
-	~~[[Category: Donor-strand exchange]]~~	+
-	~~[[Category: Dsc]]~~	+
-	~~[[Category: Dse]]~~	+
-	~~[[Category: Fimbria]]~~	+
-	~~[[Category: Nte]]~~	+
-	~~[[Category: Papa]]~~	+
-	~~[[Category: Papd]]~~	+
-	~~[[Category: Pili/n-terminal extension]]~~	+
-	~~[[Category: Pilus biogenesis~~]]	+

OCA at 12:33, 23 March 2022

OCA — Wed, 23 Mar 2022 12:33:25 GMT

←Older revision		Revision as of 12:33, 23 March 2022
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	<StructureSection load='2uy6' size='340' side='right'caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2uy6' size='340' side='right'caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [~~http~~://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [https://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [~~http~~://pdbe.org/2uy6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [https://pdbe.org/2uy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PAPA_ECOLX PAPA_ECOLX]] Polymerizes to form the thick (6.8 nm in diameter) rod of the pilus (also called fimbria). The rod is a right-handed helical cylinder with 3.28 PapA subunits per turn. Pili are polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, and enable bacteria to colonize the epithelium of specific host organs.	+	[[https://www.uniprot.org/uniprot/PAPA_ECOLX PAPA_ECOLX]] Polymerizes to form the thick (6.8 nm in diameter) rod of the pilus (also called fimbria). The rod is a right-handed helical cylinder with 3.28 PapA subunits per turn. Pili are polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, and enable bacteria to colonize the epithelium of specific host organs.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:14, 17 June 2020

OCA — Wed, 17 Jun 2020 11:14:00 GMT

←Older revision		Revision as of 11:14, 17 June 2020
Line 1:		Line 1:

	==Crystal structure of the P pilus rod subunit PapA==		==Crystal structure of the P pilus rod subunit PapA==
-	<StructureSection load='2uy6' size='340' side='right' caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='2uy6' size='340' side='right'caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://pdbe.org/2uy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://pdbe.org/2uy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Pilin\|Pilin]]	+	*[[Pilin 3D structures\|Pilin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Ecout]]		[[Category: Ecout]]
		+	[[Category: Large Structures]]
	[[Category: Bullitt, E]]		[[Category: Bullitt, E]]
	[[Category: Hultgren, S J]]		[[Category: Hultgren, S J]]

OCA at 08:28, 12 September 2018

OCA — Wed, 12 Sep 2018 08:28:01 GMT

←Older revision		Revision as of 08:28, 12 September 2018
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF THE~~ P ~~PILUS ROD SUBUNIT PAPA~~==	+
		+	==Crystal structure of the P pilus rod subunit PapA==
	<StructureSection load='2uy6' size='340' side='right' caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2uy6' size='340' side='right' caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://pdbe.org/2uy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://pdbe.org/2uy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uy6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uy/2uy6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uy/2uy6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:45, 7 February 2016

OCA — Sun, 07 Feb 2016 06:45:18 GMT

←Older revision		Revision as of 06:45, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2uy6' size='340' side='right' caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2uy6' size='340' side='right' caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://pdbe.org/2uy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PAPA_ECOLX PAPA_ECOLX]] Polymerizes to form the thick (6.8 nm in diameter) rod of the pilus (also called fimbria). The rod is a right-handed helical cylinder with 3.28 PapA subunits per turn. Pili are polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, and enable bacteria to colonize the epithelium of specific host organs.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 14:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uy6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2uy6" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
		+	[[Category: Ecout]]
	[[Category: Bullitt, E]]		[[Category: Bullitt, E]]
	[[Category: Hultgren, S J]]		[[Category: Hultgren, S J]]

OCA at 16:38, 19 January 2015

OCA — Mon, 19 Jan 2015 16:38:37 GMT

←Older revision		Revision as of 16:38, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Bullitt, E.]]	+	[[Category: Bullitt, E]]
-	[[Category: Hultgren, S J.]]	+	[[Category: Hultgren, S J]]
-	[[Category: Verger, D.]]	+	[[Category: Verger, D]]
-	[[Category: Waksman, G.]]	+	[[Category: Waksman, G]]
	[[Category: Chaperone]]		[[Category: Chaperone]]
	[[Category: Donor strand complementation]]		[[Category: Donor strand complementation]]

OCA at 01:24, 1 October 2014

OCA — Wed, 01 Oct 2014 01:24:22 GMT

←Older revision		Revision as of 01:24, 1 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2uy6.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA==
		+	<StructureSection load='2uy6' size='340' side='right' caption='[[2uy6]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UY6 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0l\|1n0l]], [[1pdk\|1pdk]], [[1qpp\|1qpp]], [[1qpx\|1qpx]], [[2j2z\|2j2z]], [[2j7l\|2j7l]], [[3dpa\|3dpa]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2uy6 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uy/2uy6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	P pili are important adhesive fibres involved in kidney infection by uropathogenic Escherichia coli strains. P pili are assembled by the conserved chaperone-usher pathway, which involves the PapD chaperone and the PapC usher. During pilus assembly, subunits are incorporated into the growing fiber via the donor-strand exchange (DSE) mechanism, whereby the chaperone's G1 beta-strand that complements the incomplete immunoglobulin-fold of each subunit is displaced by the N-terminal extension (Nte) of an incoming subunit. P pili comprise a helical rod, a tip fibrillum, and an adhesin at the distal end. PapA is the rod subunit and is assembled into a superhelical right-handed structure. Here, we have solved the structure of a ternary complex of PapD bound to PapA through donor-strand complementation, itself bound to another PapA subunit through DSE. This structure provides insight into the structural basis of the DSE reaction involving this important pilus subunit. Using gel filtration chromatography and electron microscopy on a number of PapA Nte mutants, we establish that PapA differs in its mode of assembly compared with other Pap subunits, involving a much larger Nte that encompasses not only the DSE region of the Nte but also the region N-terminal to it.

-	~~{{STRUCTURE_2uy6\| PDB=2uy6 \| SCENE= }}~~	+	Crystal structure of the P pilus rod subunit PapA.,Verger D, Bullitt E, Hultgren SJ, Waksman G PLoS Pathog. 2007 May 18;3(5):e73. PMID:17511517<ref>PMID:17511517</ref>

-	~~===CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_17511517}}~~	+	==See Also==
-		+	*[[Pilin\|Pilin]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~2uy6~~]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:017511517<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Bullitt, E.]]		[[Category: Bullitt, E.]]

OCA: Protected "2uy6" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 19:25:24 GMT

Protected "2uy6" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:25, 7 January 2013

OCA at 19:25, 7 January 2013

OCA — Mon, 07 Jan 2013 19:25:20 GMT

←Older revision		Revision as of 19:25, 7 January 2013
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-	{{Seed}}
	[[Image:2uy6.png\|left\|200px]]		[[Image:2uy6.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2uy6", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2uy6\| PDB=2uy6 \| SCENE= }}		{{STRUCTURE_2uy6\| PDB=2uy6 \| SCENE= }}

	===CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA===		===CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17511517}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17511517 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17511517}}		{{ABSTRACT_PUBMED_17511517}}

	==About this Structure==		==About this Structure==
-	~~2UY6~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA].	+	[[2uy6]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17511517~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017511517</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Bullitt, E.]]		[[Category: Bullitt, E.]]
Line 40:		Line 28:
	[[Category: Pili/n-terminal extension]]		[[Category: Pili/n-terminal extension]]
	[[Category: Pilus biogenesis]]		[[Category: Pilus biogenesis]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Apr 19 08:35:33 2009''

OCA at 05:35, 19 April 2009

OCA — Sun, 19 Apr 2009 05:35:34 GMT

←Older revision		Revision as of 05:35, 19 April 2009
Line 12:		Line 12:
	===CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA===		===CRYSTAL STRUCTURE OF THE P PILUS ROD SUBUNIT PAPA===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_17511517}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 17511517 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_17511517}}

	==About this Structure==		==About this Structure==
	2UY6 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA].		2UY6 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UY6 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:17511517</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Bullitt, E.]]		[[Category: Bullitt, E.]]
Line 32:		Line 41:
	[[Category: Pilus biogenesis]]		[[Category: Pilus biogenesis]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Feb 16 12~~:02:46 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Apr 19 08:35:33 2009''