2v08 - Revision history

OCA at 14:59, 13 December 2023

OCA — Wed, 13 Dec 2023 14:59:56 GMT

←Older revision		Revision as of 14:59, 13 December 2023
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	<StructureSection load='2v08' size='340' side='right'caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2v08' size='340' side='right'caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Phola Phola~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V08 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [https://pdbe.org/2v08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [https://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [https://pdbe.org/2v08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [https://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/F2Z292_PHOLA F2Z292_PHOLA] Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.[HAMAP-Rule:MF_00594]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 31:

	==See Also==		==See Also==
-	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	*[[Cytochrome f 3D structures\|Cytochrome f 3D structures]]		*[[Cytochrome f 3D structures\|Cytochrome f 3D structures]]
	== References ==		== References ==
Line 35:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Phola~~]]	+	[[Category: Phormidium laminosum]]
-	[[Category: Bendall~~, D S~~]]	+	[[Category: Bendall DS]]
-	[[Category: Hirst, J]]	+	[[Category: Hirst J]]
-	[[Category: Howe~~, C J~~]]	+	[[Category: Howe CJ]]
-	[[Category: Luisi~~, B F~~]]	+	[[Category: Luisi BF]]
-	[[Category: Marcaida~~, M J~~]]	+	[[Category: Marcaida MJ]]
-	[[Category: Moorlen~~, R J~~]]	+	[[Category: Moorlen RJ]]
-	[[Category: Reda, T]]	+	[[Category: Reda T]]
-	[[Category: Schlarb-Ridley~~, B G~~]]	+	[[Category: Schlarb-Ridley BG]]
-	[[Category: Wastl, J]]	+	[[Category: Wastl J]]
-	[[Category: Worrall~~, J A.R]]~~	+	[[Category: Worrall JAR]]
-	~~[[Category: Cyano-bacteria]]~~	+
-	~~[[Category: Cytochrome]]~~	+
-	~~[[Category: Electron-transfer]]~~	+
-	~~[[Category: Photosynthesis~~]]	+

OCA at 12:35, 23 March 2022

OCA — Wed, 23 Mar 2022 12:35:02 GMT

←Older revision		Revision as of 12:35, 23 March 2022
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	<StructureSection load='2v08' size='340' side='right'caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2v08' size='340' side='right'caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2V08 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [~~http~~://pdbe.org/2v08 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [https://pdbe.org/2v08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [https://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:
	==See Also==		==See Also==
	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]		*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
		+	*[[Cytochrome f 3D structures\|Cytochrome f 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:15, 17 June 2020

OCA — Wed, 17 Jun 2020 11:15:45 GMT

←Older revision		Revision as of 11:15, 17 June 2020
Line 1:		Line 1:

	==Structure of wild-type Phormidium laminosum cytochrome c6==		==Structure of wild-type Phormidium laminosum cytochrome c6==
-	<StructureSection load='2v08' size='340' side='right' caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2v08' size='340' side='right'caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2V08 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~HEM~~:~~PROTOPORPHYRIN~~+~~IX+CONTAINING+FE~~'>~~HEM~~</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://pdbe.org/2v08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://pdbe.org/2v08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 28:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Phola]]		[[Category: Phola]]
	[[Category: Bendall, D S]]		[[Category: Bendall, D S]]

OCA at 08:30, 12 September 2018

OCA — Wed, 12 Sep 2018 08:30:32 GMT

←Older revision		Revision as of 08:30, 12 September 2018
Line 1:		Line 1:
-	==~~STRUCTURE OF WILD~~-~~TYPE PHORMIDIUM LAMINOSUM CYTOCHROME C6~~==	+
		+	==Structure of wild-type Phormidium laminosum cytochrome c6==
	<StructureSection load='2v08' size='340' side='right' caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2v08' size='340' side='right' caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://pdbe.org/2v08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://pdbe.org/2v08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v08 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v08_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v08_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:06, 9 February 2016

OCA — Tue, 09 Feb 2016 06:06:50 GMT

←Older revision		Revision as of 06:06, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='2v08' size='340' side='right' caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2v08' size='340' side='right' caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Phormidium_laminosum Phormidium laminosum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phola Phola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://pdbe.org/2v08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v08 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2v08" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Phormidium laminosum~~]]	+	[[Category: Phola]]
	[[Category: Bendall, D S]]		[[Category: Bendall, D S]]
	[[Category: Hirst, J]]		[[Category: Hirst, J]]

OCA at 13:40, 19 January 2015

OCA — Mon, 19 Jan 2015 13:40:35 GMT

←Older revision		Revision as of 13:40, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Phormidium laminosum]]		[[Category: Phormidium laminosum]]
-	[[Category: Bendall, D S.]]	+	[[Category: Bendall, D S]]
-	[[Category: Hirst, J.]]	+	[[Category: Hirst, J]]
-	[[Category: Howe, C J.]]	+	[[Category: Howe, C J]]
-	[[Category: Luisi, B F.]]	+	[[Category: Luisi, B F]]
-	[[Category: Marcaida, M J.]]	+	[[Category: Marcaida, M J]]
-	[[Category: Moorlen, R J.]]	+	[[Category: Moorlen, R J]]
-	[[Category: Reda, T.]]	+	[[Category: Reda, T]]
-	[[Category: Schlarb-Ridley, B G.]]	+	[[Category: Schlarb-Ridley, B G]]
-	[[Category: Wastl, J.]]	+	[[Category: Wastl, J]]
-	[[Category: Worrall, J A.R.]]	+	[[Category: Worrall, J A.R]]
	[[Category: Cyano-bacteria]]		[[Category: Cyano-bacteria]]
	[[Category: Cytochrome]]		[[Category: Cytochrome]]
	[[Category: Electron-transfer]]		[[Category: Electron-transfer]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]

OCA at 06:44, 29 September 2014

OCA — Mon, 29 Sep 2014 06:44:57 GMT

←Older revision		Revision as of 06:44, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2v08.~~png\|left~~\|200px]]	+	==STRUCTURE OF WILD-TYPE PHORMIDIUM LAMINOSUM CYTOCHROME C6==
		+	<StructureSection load='2v08' size='340' side='right' caption='[[2v08]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V08 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v08 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v08 RCSB], [http://www.ebi.ac.uk/pdbsum/2v08 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v08_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cytochrome c6A is a unique dithio-cytochrome of green algae and plants. It has a very similar core structure to that of bacterial and algal cytochromes c6 but is unable to fulfill the same function of transferring electrons from cytochrome f to photosystem I. A key feature is that its heme midpoint potential is more than 200 mV below that of cytochrome c6 despite having His and Met as axial heme-iron ligands. To identify the molecular origins of the difference in potential, the structure of cytochrome c6 from the cyanobacterium Phormidium laminosum has been determined by X-ray crystallography and compared with the known structure of cytochrome c6A. One salient difference of the heme pockets is that a highly conserved Gln (Q51) in cytochrome c6 is replaced by Val (V52) in c6A. Using protein film voltammetry, we found that swapping these residues raised the c6A potential by +109 mV and decreased that of c6 by almost the same extent, -100 mV. X-ray crystallography of the V52Q protein showed that the Gln residue adopts the same configuration relative to the heme as in cytochrome c6 and we propose that this stereochemistry destabilizes the oxidized form of the heme. Consequently, replacement of Gln by Val was probably a key step in the evolution of cytochrome c6A from cytochrome c6, inhibiting reduction by the cytochrome b6f complex and facilitating establishment of a new function.

-	~~{{STRUCTURE_2v08\| PDB=2v08 \| SCENE= }}~~	+	Modulation of heme redox potential in the cytochrome c6 family.,Worrall JA, Schlarb-Ridley BG, Reda T, Marcaida MJ, Moorlen RJ, Wastl J, Hirst J, Bendall DS, Luisi BF, Howe CJ J Am Chem Soc. 2007 Aug 1;129(30):9468-75. Epub 2007 Jul 11. PMID:17625855<ref>PMID:17625855</ref>

-	~~===STRUCTURE OF WILD-TYPE PHORMIDIUM LAMINOSUM CYTOCHROME C6===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17625855}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2v08]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Phormidium_laminosum Phormidium laminosum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017625855<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Phormidium laminosum]]		[[Category: Phormidium laminosum]]
	[[Category: Bendall, D S.]]		[[Category: Bendall, D S.]]

OCA at 12:54, 20 October 2012

OCA — Sat, 20 Oct 2012 12:54:23 GMT

←Older revision		Revision as of 12:54, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2v08]] is a 2 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA].	+	[[2v08]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA].

	==See Also==		==See Also==

OCA: Protected "2v08" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 10:16:44 GMT

Protected "2v08" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:16, 26 July 2012

OCA at 10:16, 26 July 2012

OCA — Thu, 26 Jul 2012 10:16:43 GMT

←Older revision		Revision as of 10:16, 26 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2v08.png\|left\|200px]]		[[Image:2v08.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2v08", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2v08\| PDB=2v08 \| SCENE= }}		{{STRUCTURE_2v08\| PDB=2v08 \| SCENE= }}

	===STRUCTURE OF WILD-TYPE PHORMIDIUM LAMINOSUM CYTOCHROME C6===		===STRUCTURE OF WILD-TYPE PHORMIDIUM LAMINOSUM CYTOCHROME C6===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17625855}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17625855 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17625855}}		{{ABSTRACT_PUBMED_17625855}}

	==About this Structure==		==About this Structure==
-	~~2V08~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA].	+	[[2v08]] is a 2 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Phormidium_laminosum Phormidium laminosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V08 OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17625855~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017625855</ref><references group="xtra"/>
	[[Category: Phormidium laminosum]]		[[Category: Phormidium laminosum]]
	[[Category: Bendall, D S.]]		[[Category: Bendall, D S.]]
Line 39:		Line 30:
	[[Category: Electron-transfer]]		[[Category: Electron-transfer]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 07:06:15 2009''