2v0u - Revision history

OCA at 15:01, 13 December 2023

OCA — Wed, 13 Dec 2023 15:01:05 GMT

←Older revision		Revision as of 15:01, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2v0u' size='340' side='right'caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2v0u' size='340' side='right'caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Avesa Avesa~~]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V0U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V0U FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height~~: ~~3em;~~'>~~[[2v0w\|2v0w]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [https://pdbe.org/2v0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [https://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [https://pdbe.org/2v0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [https://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O49003_AVESA O49003_AVESA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Avesa~~]]	+	[[Category: Avena sativa]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Phototropin]]		[[Category: Phototropin]]
	[[Category: RCSB PDB Molecule of the Month]]		[[Category: RCSB PDB Molecule of the Month]]
-	[[Category: Halavaty~~, A S~~]]	+	[[Category: Halavaty AS]]
-	[[Category: Moffat, K]]	+	[[Category: Moffat K]]
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Avena sativa]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Light-induced signal transduction]]~~	+
-	~~[[Category: Lov2]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: Phototropin1]]~~	+
-	~~[[Category: Serine/threonine-protein kinase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 12:35, 23 March 2022

OCA — Wed, 23 Mar 2022 12:35:41 GMT

←Older revision		Revision as of 12:35, 23 March 2022
Line 3:		Line 3:
	<StructureSection load='2v0u' size='340' side='right'caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2v0u' size='340' side='right'caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Avesa Avesa]. The March 2015 RCSB PDB [~~http~~://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [~~http~~://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2V0U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Avesa Avesa]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V0U FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2v0w\|2v0w]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [~~http~~://pdbe.org/2v0u PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [https://pdbe.org/2v0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [https://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:16, 17 June 2020

OCA — Wed, 17 Jun 2020 11:16:28 GMT

←Older revision		Revision as of 11:16, 17 June 2020
Line 1:		Line 1:

	==n- and c-terminal helices of oat lov2 (404-546) are involved in light-induced signal transduction (cryo dark structure of lov2 (404-546))==		==n- and c-terminal helices of oat lov2 (404-546) are involved in light-induced signal transduction (cryo dark structure of lov2 (404-546))==
-	<StructureSection load='2v0u' size='340' side='right' caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>	+	<StructureSection load='2v0u' size='340' side='right'caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avesa Avesa]. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2V0U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avesa Avesa]. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2V0U FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://pdbe.org/2v0u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://pdbe.org/2v0u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Avesa]]		[[Category: Avesa]]
		+	[[Category: Large Structures]]
	[[Category: Phototropin]]		[[Category: Phototropin]]
	[[Category: RCSB PDB Molecule of the Month]]		[[Category: RCSB PDB Molecule of the Month]]

OCA at 08:53, 12 September 2018

OCA — Wed, 12 Sep 2018 08:53:14 GMT

←Older revision		Revision as of 08:53, 12 September 2018
Line 1:		Line 1:

-	==N- ~~AND C~~-~~TERMINAL HELICES OF OAT LOV2~~ (404-546) ~~ARE INVOLVED IN LIGHT~~-~~INDUCED SIGNAL TRANSDUCTION~~ (~~CRYO DARK STRUCTURE OF LOV2~~ (404-546))==	+	==n- and c-terminal helices of oat lov2 (404-546) are involved in light-induced signal transduction (cryo dark structure of lov2 (404-546))==
	<StructureSection load='2v0u' size='340' side='right' caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2v0u' size='340' side='right' caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v0u_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v0u_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:57, 11 August 2016

OCA — Thu, 11 Aug 2016 07:57:45 GMT

←Older revision		Revision as of 07:57, 11 August 2016
Line 1:		Line 1:
		+
	==N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404-546))==		==N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404-546))==
	<StructureSection load='2v0u' size='340' side='right' caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2v0u' size='340' side='right' caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Avena_sativa Avena sativa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V0U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avesa Avesa]. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V0U FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://pdbe.org/2v0u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v0u ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v0u ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2v0u" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Avena sativa~~]]	+	[[Category: Avesa]]
		+	[[Category: Phototropin]]
		+	[[Category: RCSB PDB Molecule of the Month]]
	[[Category: Halavaty, A S]]		[[Category: Halavaty, A S]]
	[[Category: Moffat, K]]		[[Category: Moffat, K]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
		+	[[Category: Avena sativa]]
	[[Category: Kinase]]		[[Category: Kinase]]
	[[Category: Light-induced signal transduction]]		[[Category: Light-induced signal transduction]]

OCA at 14:20, 19 January 2015

OCA — Mon, 19 Jan 2015 14:20:09 GMT

←Older revision		Revision as of 14:20, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V0U FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V0U FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Avena sativa]]		[[Category: Avena sativa]]
-	[[Category: Halavaty, A S.]]	+	[[Category: Halavaty, A S]]
-	[[Category: Moffat, K.]]	+	[[Category: Moffat, K]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
-	[[Category: Avena sativa]]
	[[Category: Kinase]]		[[Category: Kinase]]
	[[Category: Light-induced signal transduction]]		[[Category: Light-induced signal transduction]]

OCA at 01:41, 1 October 2014

OCA — Wed, 01 Oct 2014 01:41:01 GMT

←Older revision		Revision as of 01:41, 1 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2v0u.~~png~~\|~~left~~\|200px]]	+	==N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404-546))==
		+	<StructureSection load='2v0u' size='340' side='right' caption='[[2v0u]], [[Resolution\|resolution]] 1.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V0U FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v0w\|2v0w]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v0u RCSB], [http://www.ebi.ac.uk/pdbsum/2v0u PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v0/2v0u_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Light sensing by photoreceptors controls phototropism, chloroplast movement, stomatal opening, and leaf expansion in plants. Understanding the molecular mechanism by which these processes are regulated requires a quantitative description of photoreceptor dynamics. We focus on a light-driven signal transduction mechanism in the LOV2 domain (LOV, light, oxygen, voltage) of the blue light photoreceptor phototropin 1 from Avena sativa (oat). High-resolution crystal structures of the dark and light states of an oat LOV2 construct including residues Leu404 through Leu546 (LOV2 (404-546)) have been determined at 105 and 293 K. In all four structures, LOV2 (404-546) exhibits the typical Per-ARNT-Sim (PAS) fold, flanked by an additional conserved N-terminal turn-helix-turn motif and a C-terminal flanking region containing an amphipathic Jalpha helix. These regions dock on the LOV2 core domain and bury several hydrophobic residues of the central beta-sheet of the core domain that would otherwise be exposed to solvent. Light structures of LOV2 (404-546) reveal that formation of the covalent bond between Cys450 and the C4a atom of the flavin mononucleotide (FMN) results in local rearrangement of the hydrogen-bonding network in the FMN binding pocket. These rearrangements are associated with disruption of the Asn414-Asp515 hydrogen bond on the surface of the protein and displacement of the N- and C-terminal flanking regions of LOV2 (404-546), both of which constitute a structural signal.

-	~~{{STRUCTURE_2v0u\| PDB=2v0u \| SCENE= }}~~	+	N- and C-terminal flanking regions modulate light-induced signal transduction in the LOV2 domain of the blue light sensor phototropin 1 from Avena sativa.,Halavaty AS, Moffat K Biochemistry. 2007 Dec 11;46(49):14001-9. Epub 2007 Nov 15. PMID:18001137<ref>PMID:18001137</ref>

-	~~===N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404-546))===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18001137}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2v0u]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Avena_sativa Avena sativa]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018001137<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Avena sativa]]		[[Category: Avena sativa]]
	[[Category: Halavaty, A S.]]		[[Category: Halavaty, A S.]]

OCA: Protected "2v0u" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 18:21:14 GMT

Protected "2v0u" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:21, 7 January 2013

OCA at 18:21, 7 January 2013

OCA — Mon, 07 Jan 2013 18:21:12 GMT

←Older revision		Revision as of 18:21, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2v0u.png\|left\|200px]]		[[Image:2v0u.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2v0u", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2v0u\| PDB=2v0u \| SCENE= }}		{{STRUCTURE_2v0u\| PDB=2v0u \| SCENE= }}

	===N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404-546))===		===N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404-546))===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18001137}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18001137 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18001137}}		{{ABSTRACT_PUBMED_18001137}}

	==About this Structure==		==About this Structure==
-	~~2V0U~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA].	+	[[2v0u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18001137~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018001137</ref><references group="xtra"/>
	[[Category: Avena sativa]]		[[Category: Avena sativa]]
	[[Category: Halavaty, A S.]]		[[Category: Halavaty, A S.]]
Line 36:		Line 24:
	[[Category: Serine/threonine-protein kinase]]		[[Category: Serine/threonine-protein kinase]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:28:07 2009''

OCA at 18:28, 17 February 2009

OCA — Tue, 17 Feb 2009 18:28:08 GMT

←Older revision		Revision as of 18:28, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2V0U is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA].	+	2V0U is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Avena_sativa Avena sativa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V0U OCA].

	==Reference==		==Reference==
-	N- and C-terminal flanking regions modulate light-induced signal transduction in the LOV2 domain of the blue light sensor phototropin 1 from Avena sativa., Halavaty AS, Moffat K, Biochemistry. 2007 Dec 11;46(49):14001-9. Epub 2007 Nov 15. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18001137 18001137]~~	+	<ref group="xtra">PMID:18001137</ref><references group="xtra"/>
	[[Category: Avena sativa]]		[[Category: Avena sativa]]
-	[[Category: Single protein]]
	[[Category: Halavaty, A S.]]		[[Category: Halavaty, A S.]]
	[[Category: Moffat, K.]]		[[Category: Moffat, K.]]
Line 38:		Line 37:
	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 04~~:22:~~02 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:28:07 2009''