2v1f - Revision history

OCA at 15:01, 13 December 2023

OCA — Wed, 13 Dec 2023 15:01:41 GMT

←Older revision		Revision as of 15:01, 13 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V1F FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V1F FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [https://pdbe.org/2v1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [https://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [https://pdbe.org/2v1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [https://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 38:
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Andersson~~, K K~~]]	+	[[Category: Andersson KK]]
-	[[Category: Gorbitz~~, C H~~]]	+	[[Category: Gorbitz CH]]
-	[[Category: Hersleth, H P]]	+	[[Category: Hersleth H-P]]
-	~~[[Category: Ferryl]]~~	+
-	~~[[Category: Haem]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Monooxygenase]]~~	+
-	~~[[Category: Muscle protein]]~~	+
-	~~[[Category: Oxygen activation]]~~	+
-	~~[[Category: Oxygen transport]]~~	+
-	~~[[Category: Peroxidase]]~~	+
-	~~[[Category: Radiation]]~~	+
-	~~[[Category: Reaction intermediate]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 12:35, 23 March 2022

OCA — Wed, 23 Mar 2022 12:35:53 GMT

←Older revision		Revision as of 12:35, 23 March 2022
Line 3:		Line 3:
	<StructureSection load='2v1f' size='340' side='right'caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='2v1f' size='340' side='right'caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2V1F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V1F FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [~~http~~://pdbe.org/2v1f PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [https://pdbe.org/2v1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [https://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:16, 17 June 2020

OCA — Wed, 17 Jun 2020 11:16:42 GMT

←Older revision		Revision as of 11:16, 17 June 2020
Line 1:		Line 1:

	==Crystal structure of radiation-induced myoglobin compound II - intermediate H at pH 8.7==		==Crystal structure of radiation-induced myoglobin compound II - intermediate H at pH 8.7==
-	<StructureSection load='2v1f' size='340' side='right' caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='2v1f' size='340' side='right'caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2V1F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2V1F FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://pdbe.org/2v1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://pdbe.org/2v1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Myoglobin\|Myoglobin]]	+	*[[Myoglobin 3D structures\|Myoglobin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
		+	[[Category: Large Structures]]
	[[Category: Andersson, K K]]		[[Category: Andersson, K K]]
	[[Category: Gorbitz, C H]]		[[Category: Gorbitz, C H]]

OCA at 08:45, 12 September 2018

OCA — Wed, 12 Sep 2018 08:45:47 GMT

←Older revision		Revision as of 08:45, 12 September 2018
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF RADIATION~~-~~INDUCED MYOGLOBIN COMPOUND~~ II - ~~INTERMEDIATE~~ H ~~AT PH~~ 8.7==	+
		+	==Crystal structure of radiation-induced myoglobin compound II - intermediate H at pH 8.7==
	<StructureSection load='2v1f' size='340' side='right' caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='2v1f' size='340' side='right' caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://pdbe.org/2v1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://pdbe.org/2v1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v1f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v1/2v1f_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v1/2v1f_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:44, 10 February 2016

OCA — Wed, 10 Feb 2016 06:44:53 GMT

←Older revision		Revision as of 06:44, 10 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://pdbe.org/2v1f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v1f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2v1f" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 12:31, 25 December 2014

OCA — Thu, 25 Dec 2014 12:31:30 GMT

←Older revision		Revision as of 12:31, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V1F FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V1F FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
-	[[Category: Andersson, K K.]]	+	[[Category: Andersson, K K]]
-	[[Category: Gorbitz, C H.]]	+	[[Category: Gorbitz, C H]]
-	[[Category: Hersleth, H P.]]	+	[[Category: Hersleth, H P]]
	[[Category: Ferryl]]		[[Category: Ferryl]]
	[[Category: Haem]]		[[Category: Haem]]

OCA at 09:09, 29 September 2014

OCA — Mon, 29 Sep 2014 09:09:28 GMT

←Older revision		Revision as of 09:09, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2v1f.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II - INTERMEDIATE H AT PH 8.7==
		+	<StructureSection load='2v1f' size='340' side='right' caption='[[2v1f]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2v1f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V1F FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azi\|1azi]], [[1bje\|1bje]], [[1dwr\|1dwr]], [[1dws\|1dws]], [[1dwt\|1dwt]], [[1gjn\|1gjn]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1npf\|1npf]], [[1npg\|1npg]], [[1nz2\|1nz2]], [[1nz3\|1nz3]], [[1nz4\|1nz4]], [[1nz5\|1nz5]], [[1rse\|1rse]], [[1wla\|1wla]], [[1xch\|1xch]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[2frf\|2frf]], [[2fri\|2fri]], [[2frj\|2frj]], [[2frk\|2frk]], [[2in4\|2in4]], [[2v1e\|2v1e]], [[2v1g\|2v1g]], [[2v1h\|2v1h]], [[2v1i\|2v1i]], [[2v1j\|2v1j]], [[2v1k\|2v1k]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v1f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v1f RCSB], [http://www.ebi.ac.uk/pdbsum/2v1f PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v1/2v1f_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	High resolution crystal structures of myoglobin in the pH range 5.2-8.7 have been used as models for the peroxide-derived compound II intermediates in heme peroxidases and oxygenases. The observed Fe-O bond length (1.86-1.90 A) is consistent with that of a single bond. The compound II state of myoglobin in crystals was controlled by single-crystal microspectrophotometry before and after synchrotron data collection. We observe some radiation-induced changes in both compound II (resulting in intermediate H) and in the resting ferric state of myoglobin. These radiation-induced states are quite unstable, and compound II and ferric myoglobin are immediately regenerated through a short heating above the glass transition temperature (<1 s) of the crystals. It is unclear how this influences our compound II structures compared with the unaffected compound II, but some crystallographic data suggest that the influence on the Fe-O bond distance is minimal. Based on our crystallographic and spectroscopic data we suggest that for myoglobin the compound II intermediate consists of an Fe(IV)-O species with a single bond. The presence of Fe(IV) is indicated by a small isomer shift of delta = 0.07 mm/s from Mossbauer spectroscopy. Earlier quantum refinements (crystallographic refinement where the molecular-mechanics potential is replaced by a quantum chemical calculation) and density functional theory calculations suggest that this intermediate H species is protonated.

-	~~{{STRUCTURE_2v1f\| PDB=2v1f \| SCENE= }}~~	+	Crystallographic and spectroscopic studies of peroxide-derived myoglobin compound II and occurrence of protonated FeIV O.,Hersleth HP, Uchida T, Rohr AK, Teschner T, Schunemann V, Kitagawa T, Trautwein AX, Gorbitz CH, Andersson KK J Biol Chem. 2007 Aug 10;282(32):23372-86. Epub 2007 Jun 12. PMID:17565988<ref>PMID:17565988</ref>

-	~~===CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II - INTERMEDIATE H AT PH 8.7===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17565988}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2v1f]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Equus_caballus Equus caballus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA].~~	+

	==See Also==		==See Also==
	*[[Myoglobin\|Myoglobin]]		*[[Myoglobin\|Myoglobin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017565988<~~/~~ref~~><~~ref group="xtra">PMID:011935353</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Andersson, K K.]]		[[Category: Andersson, K K.]]

OCA at 16:42, 20 October 2012

OCA — Sat, 20 Oct 2012 16:42:03 GMT

←Older revision		Revision as of 16:42, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2v1f]] is a 1 chain structure ~~of [[Myoglobin]]~~ with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA].	+	[[2v1f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V1F OCA].

	==See Also==		==See Also==

OCA at 22:33, 26 July 2012

OCA — Thu, 26 Jul 2012 22:33:37 GMT

←Older revision		Revision as of 22:33, 26 July 2012
Line 1:		Line 1:
	[[Image:2v1f.png\|left\|200px]]		[[Image:2v1f.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2v1f", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2v1f\| PDB=2v1f \| SCENE= }}		{{STRUCTURE_2v1f\| PDB=2v1f \| SCENE= }}

	===CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II - INTERMEDIATE H AT PH 8.7===		===CRYSTAL STRUCTURE OF RADIATION-INDUCED MYOGLOBIN COMPOUND II - INTERMEDIATE H AT PH 8.7===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17565988}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17565988 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17565988}}		{{ABSTRACT_PUBMED_17565988}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Myoglobin]]	+	*[[Myoglobin\|Myoglobin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17565988~~</ref><ref group="xtra">PMID:~~11935353~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017565988</ref><ref group="xtra">PMID:011935353</ref><references group="xtra"/>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Andersson, K K.]]		[[Category: Andersson, K K.]]

OCA: Protected "2v1f" [edit=sysop:move=sysop]

OCA — Sun, 26 Dec 2010 21:50:28 GMT

Protected "2v1f" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:50, 26 December 2010