2v3b - Revision history

OCA at 15:04, 13 December 2023

OCA — Wed, 13 Dec 2023 15:04:25 GMT

←Older revision		Revision as of 15:04, 13 December 2023
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	<StructureSection load='2v3b' size='340' side='right'caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2v3b' size='340' side='right'caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pseae Pseae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3B FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FAD:FLAVIN~~-~~ADENINE+DINUCLEOTIDE'>FAD</scene>~~, ~~<scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.45Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height~~: ~~3em;~~'>~~[[2v3a\|2v3a]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [https://pdbe.org/2v3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [https://www.ebi.ac.uk/pdbsum/2v3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3b ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [https://pdbe.org/2v3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [https://www.ebi.ac.uk/pdbsum/2v3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3b ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RURE_PSEAE RURE_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref> <ref>PMID:12730186</ref> [[https://www.uniprot.org/uniprot/RUBR2_PSEAE RUBR2_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref>	+	[https://www.uniprot.org/uniprot/RURE_PSEAE RURE_PSEAE] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref> <ref>PMID:12730186</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</div>		</div>
	<div class="pdbe-citations 2v3b" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2v3b" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Rubredoxin 3D structures\|Rubredoxin 3D structures]]
		+	*[[Rubredoxin PDB structures\|Rubredoxin PDB structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pseae~~]]	+	[[Category: Pseudomonas aeruginosa PAO1]]
-	[[Category: Adams~~, T M~~]]	+	[[Category: Adams TM]]
-	[[Category: Hagelueken, G]]	+	[[Category: Hagelueken G]]
-	[[Category: Heinz~~, D W~~]]	+	[[Category: Heinz DW]]
-	[[Category: Kolmar, H]]	+	[[Category: Kolmar H]]
-	[[Category: Schubert, W D]]	+	[[Category: Schubert W-D]]
-	[[Category: Tuemmler, B]]	+	[[Category: Tuemmler B]]
-	[[Category: Wiehlmann, L]]	+	[[Category: Wiehlmann L]]
-	~~[[Category: Alkane degradation]]~~	+
-	~~[[Category: Electron transfer]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Fad]]~~	+
-	~~[[Category: Flavoprotein]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Iron-sulfur protein]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Nad]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 10:41, 7 July 2021

OCA — Wed, 07 Jul 2021 10:41:34 GMT

←Older revision		Revision as of 10:41, 7 July 2021
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	<StructureSection load='2v3b' size='340' side='right'caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2v3b' size='340' side='right'caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2V3B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V3B FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2v3a\|2v3a]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [~~http~~://pdbe.org/2v3b PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2v3b PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3b ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [https://pdbe.org/2v3b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [https://www.ebi.ac.uk/pdbsum/2v3b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3b ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RURE_PSEAE RURE_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref> <ref>PMID:12730186</ref> [[~~http~~://www.uniprot.org/uniprot/RUBR2_PSEAE RUBR2_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref>	+	[[https://www.uniprot.org/uniprot/RURE_PSEAE RURE_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref> <ref>PMID:12730186</ref> [[https://www.uniprot.org/uniprot/RUBR2_PSEAE RUBR2_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:38, 24 July 2019

OCA — Wed, 24 Jul 2019 07:38:20 GMT

←Older revision		Revision as of 07:38, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of the electron transfer complex rubredoxin - rubredoxin reductase from Pseudomonas aeruginosa.==		==Crystal structure of the electron transfer complex rubredoxin - rubredoxin reductase from Pseudomonas aeruginosa.==
-	<StructureSection load='2v3b' size='340' side='right' caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>	+	<StructureSection load='2v3b' size='340' side='right'caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pseae]]		[[Category: Pseae]]
	[[Category: Adams, T M]]		[[Category: Adams, T M]]

OCA at 08:24, 12 September 2018

OCA — Wed, 12 Sep 2018 08:24:07 GMT

←Older revision		Revision as of 08:24, 12 September 2018
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-	==~~CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN~~ - ~~RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA~~.==	+
		+	==Crystal structure of the electron transfer complex rubredoxin - rubredoxin reductase from Pseudomonas aeruginosa.==
	<StructureSection load='2v3b' size='340' side='right' caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2v3b' size='340' side='right' caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://pdbe.org/2v3b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://pdbe.org/2v3b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v3b ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3b_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3b_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</div>		</div>
	<div class="pdbe-citations 2v3b" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2v3b" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Hemagglutinin\|Hemagglutinin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:52, 10 February 2016

OCA — Wed, 10 Feb 2016 07:52:03 GMT

←Older revision		Revision as of 07:52, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='2v3b' size='340' side='right' caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='2v3b' size='340' side='right' caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://pdbe.org/2v3b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v3b ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2v3b" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pseudomonas aeruginosa~~]]	+	[[Category: Pseae]]
	[[Category: Adams, T M]]		[[Category: Adams, T M]]
	[[Category: Hagelueken, G]]		[[Category: Hagelueken, G]]

OCA at 12:50, 25 December 2014

OCA — Thu, 25 Dec 2014 12:50:11 GMT

←Older revision		Revision as of 12:50, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RURE_PSEAE RURE_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref> <ref>PMID:12730186</ref> [[http://www.uniprot.org/uniprot/RUBR2_PSEAE RUBR2_PSEAE]] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.<ref>PMID:14574114</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Adams, T M.]]	+	[[Category: Adams, T M]]
-	[[Category: Hagelueken, G.]]	+	[[Category: Hagelueken, G]]
-	[[Category: Heinz, D W.]]	+	[[Category: Heinz, D W]]
-	[[Category: Kolmar, H.]]	+	[[Category: Kolmar, H]]
-	[[Category: Schubert, W D.]]	+	[[Category: Schubert, W D]]
-	[[Category: Tuemmler, B.]]	+	[[Category: Tuemmler, B]]
-	[[Category: Wiehlmann, L.]]	+	[[Category: Wiehlmann, L]]
	[[Category: Alkane degradation]]		[[Category: Alkane degradation]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]

OCA at 01:57, 1 October 2014

OCA — Wed, 01 Oct 2014 01:57:04 GMT

←Older revision		Revision as of 01:57, 1 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2v3b\| PDB=2v3b \| SCENE= }}~~	+	==CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN - RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA.==
-	===CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN - RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA.===	+	<StructureSection load='2v3b' size='340' side='right' caption='[[2v3b]], [[Resolution\|resolution]] 2.45Å' scene=''>
-	~~{{ABSTRACT_PUBMED_17636129}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V3B FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2v3a\|2v3a]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v3b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v3b RCSB], [http://www.ebi.ac.uk/pdbsum/2v3b PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v3/2v3b_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Crude oil spills represent a major ecological threat because of the chemical inertness of the constituent n-alkanes. The Gram-negative bacterium Pseudomonas aeruginosa is one of the few bacterial species able to metabolize such compounds. Three chromosomal genes, rubB, rubA1, and rubA2 coding for an NAD(P)H:rubredoxin reductase (RdxR) and two rubredoxins (Rdxs) are indispensable for this ability. They constitute an electron transport (ET) pathway that shuttles reducing equivalents from carbon metabolism to the membrane-bound alkane hydroxylases AlkB1 and AlkB2. The RdxR-Rdx system also is crucial as part of the oxidative stress response in archaea or anaerobic bacteria. The redox couple has been analyzed in detail as a model system for ET processes. We have solved the structure of RdxR of P. aeruginosa both alone and in complex with Rdx, without the need for cross-linking, and both structures were refined at 2.40- and 2.45-A resolution, respectively. RdxR consists of two cofactor-binding domains and a C-terminal domain essential for the specific recognition of Rdx. Only a small number of direct interactions govern mutual recognition of RdxR and Rdx, corroborating the transient nature of the complex. The shortest distance between the redox centers is observed to be 6.2 A.

-	~~==About this Structure==~~	+	Crystal structure of the electron transfer complex rubredoxin rubredoxin reductase of Pseudomonas aeruginosa.,Hagelueken G, Wiehlmann L, Adams TM, Kolmar H, Heinz DW, Tummler B, Schubert WD Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12276-81. Epub 2007 Jul 16. PMID:17636129<ref>PMID:17636129</ref>
-	~~[[2v3b]] is a 2 chain~~ structure ~~with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa~~ Pseudomonas aeruginosa]. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2V3B OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Hemagglutinin\|Hemagglutinin]]		*[[Hemagglutinin\|Hemagglutinin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017636129<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Adams, T M.]]		[[Category: Adams, T M.]]

OCA at 10:55, 11 March 2013

OCA — Mon, 11 Mar 2013 10:55:17 GMT

←Older revision		Revision as of 10:55, 11 March 2013
Line 1:		Line 1:
-	[[Image:2v3b.png\|left\|200px]]
-
	{{STRUCTURE_2v3b\| PDB=2v3b \| SCENE= }}		{{STRUCTURE_2v3b\| PDB=2v3b \| SCENE= }}
-
	===CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN - RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA.===		===CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN - RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA.===
-
	{{ABSTRACT_PUBMED_17636129}}		{{ABSTRACT_PUBMED_17636129}}

OCA at 16:52, 20 October 2012

OCA — Sat, 20 Oct 2012 16:52:26 GMT

←Older revision		Revision as of 16:52, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2v3b]] is a 2 chain structure ~~of [[Hemagglutinin]]~~ with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA].	+	[[2v3b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V3B OCA].

	==See Also==		==See Also==

OCA: Protected "2v3b" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 23:06:09 GMT

Protected "2v3b" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:06, 26 July 2012