2v6w - Revision history

OCA at 09:55, 9 May 2024

OCA — Thu, 09 May 2024 09:55:35 GMT

←Older revision		Revision as of 09:55, 9 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V6W FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V6W FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [https://pdbe.org/2v6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [https://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [https://pdbe.org/2v6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [https://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:54, 12 April 2023

OCA — Wed, 12 Apr 2023 20:54:31 GMT

←Older revision		Revision as of 20:54, 12 April 2023
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	<StructureSection load='2v6w' size='340' side='right'caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2v6w' size='340' side='right'caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V6W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V6W FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [https://pdbe.org/2v6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [https://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [https://pdbe.org/2v6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [https://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Betzel, C]]	+	[[Category: Betzel C]]
-	[[Category: Brauer~~, A B.E~~]]	+	[[Category: Brauer ABE]]
-	[[Category: Brode, S]]	+	[[Category: Brode S]]
-	[[Category: Erdmann~~, V A~~]]	+	[[Category: Erdmann VA]]
-	[[Category: Foerster, C]]	+	[[Category: Foerster C]]
-	[[Category: Fuerste~~, J P]]~~	+	[[Category: Fuerste JP]]
-	~~[[Category: 8 angstrom resolution]]~~	+
-	~~[[Category: E coli trnaser acceptor stem microhelix]]~~	+
-	~~[[Category: Hydration pattern]]~~	+
-	~~[[Category: Nucleic acid trna identity]]~~	+
-	~~[[Category: Rna~~]]	+

OCA at 10:42, 7 July 2021

OCA — Wed, 07 Jul 2021 10:42:27 GMT

←Older revision		Revision as of 10:42, 7 July 2021
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	<StructureSection load='2v6w' size='340' side='right'caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2v6w' size='340' side='right'caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2V6W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V6W FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [~~http~~://pdbe.org/2v6w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [https://pdbe.org/2v6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [https://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:09, 10 May 2019

OCA — Fri, 10 May 2019 12:09:29 GMT

←Older revision		Revision as of 12:09, 10 May 2019
Line 1:		Line 1:

	==tRNASer acceptor stem: Conformation and hydration of a microhelix in a crystal structure at 1.8 Angstrom resolution==		==tRNASer acceptor stem: Conformation and hydration of a microhelix in a crystal structure at 1.8 Angstrom resolution==
-	<StructureSection load='2v6w' size='340' side='right' caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='2v6w' size='340' side='right'caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V6W FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V6W FirstGlance]. <br>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Betzel, C]]		[[Category: Betzel, C]]
	[[Category: Brauer, A B.E]]		[[Category: Brauer, A B.E]]

OCA at 08:47, 12 September 2018

OCA — Wed, 12 Sep 2018 08:47:11 GMT

←Older revision		Revision as of 08:47, 12 September 2018
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-	==~~TRNASER ACCEPTOR STEM~~: ~~CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT~~ 1.8 ~~ANGSTROM RESOLUTION~~==	+	==tRNASer acceptor stem: Conformation and hydration of a microhelix in a crystal structure at 1.8 Angstrom resolution==
	<StructureSection load='2v6w' size='340' side='right' caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2v6w' size='340' side='right' caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==

OCA at 10:26, 11 August 2016

OCA — Thu, 11 Aug 2016 10:26:36 GMT

←Older revision		Revision as of 10:26, 11 August 2016
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		+
	==TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION==		==TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION==
	<StructureSection load='2v6w' size='340' side='right' caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2v6w' size='340' side='right' caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V6W FirstGlance]. <br>		<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V6W FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [http://www.ebi.ac.uk/pdbsum/2v6w PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [http://pdbe.org/2v6w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [http://www.ebi.ac.uk/pdbsum/2v6w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2v6w ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2v6w" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:35, 22 January 2015

OCA — Thu, 22 Jan 2015 06:35:43 GMT

←Older revision		Revision as of 06:35, 22 January 2015
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Betzel, C.]]	+	[[Category: Betzel, C]]
-	[[Category: Brauer, A B.E.]]	+	[[Category: Brauer, A B.E]]
-	[[Category: Brode, S.]]	+	[[Category: Brode, S]]
-	[[Category: Erdmann, V A.]]	+	[[Category: Erdmann, V A]]
-	[[Category: Foerster, C.]]	+	[[Category: Foerster, C]]
-	[[Category: Fuerste, J P.]]	+	[[Category: Fuerste, J P]]
-	[[Category: 1 8 angstrom resolution]]	+	[[Category: 8 angstrom resolution]]
	[[Category: E coli trnaser acceptor stem microhelix]]		[[Category: E coli trnaser acceptor stem microhelix]]
	[[Category: Hydration pattern]]		[[Category: Hydration pattern]]
	[[Category: Nucleic acid trna identity]]		[[Category: Nucleic acid trna identity]]
	[[Category: Rna]]		[[Category: Rna]]

OCA at 11:24, 20 October 2014

OCA — Mon, 20 Oct 2014 11:24:40 GMT

←Older revision		Revision as of 11:24, 20 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2v6w.~~png\|left\|200px~~]]	+	==TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION==
		+	<StructureSection load='2v6w' size='340' side='right' caption='[[2v6w]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2V6W FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v6w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2v6w RCSB], [http://www.ebi.ac.uk/pdbsum/2v6w PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of a serine-specific tRNA acceptor-stem microhelix, the binding site for the seryl-tRNA synthetase, was solved by X-ray analysis. This seven-base-pair tRNA(Ser) microhelix forms endless rows of helices in the crystal lattice, with two helices stacking 'head-to-head' onto each other, resulting in an intermolecular guanosine stacking of the first purine nucleotides at the 5'-strands of the tRNA(Ser) microhelices. A network of 75 water loci could be associated with each RNA duplex. Unusual local geometric backbone parameters could be detected in the region of the G4 phosphate located in the 5'-strand of the helix, which lead to a ;kink' in this region and to an irregularly bent helix. The role of the specific hydration pattern and of the irregular conformation of the tRNA(Ser) acceptor-stem helix is discussed and summarized.

-	~~{{STRUCTURE_2v6w\| PDB=2v6w \| SCENE= }}~~	+	tRNASer acceptor stem: conformation and hydration of a microhelix in a crystal structure at 1.8 A resolution.,Forster C, Brauer AB, Brode S, Furste JP, Betzel C, Erdmann VA Acta Crystallogr D Biol Crystallogr. 2007 Nov;63(Pt 11):1154-61. Epub 2007, Oct 17. PMID:18007030<ref>PMID:18007030</ref>

-	~~===TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1~~.~~8 ANGSTROM RESOLUTION===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18007030}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http:~~//~~oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA].~~	+	</StructureSection>
	[[Category: Betzel, C.]]		[[Category: Betzel, C.]]
	[[Category: Brauer, A B.E.]]		[[Category: Brauer, A B.E.]]

OCA: Protected "2v6w" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 20:21:56 GMT

Protected "2v6w" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:21, 7 January 2013

OCA at 20:21, 7 January 2013

OCA — Mon, 07 Jan 2013 20:21:54 GMT

←Older revision		Revision as of 20:21, 7 January 2013
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-	{{Seed}}
	[[Image:2v6w.png\|left\|200px]]		[[Image:2v6w.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2v6w", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2v6w\| PDB=2v6w \| SCENE= }}		{{STRUCTURE_2v6w\| PDB=2v6w \| SCENE= }}

	===TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION===		===TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION===

		+	{{ABSTRACT_PUBMED_18007030}}

	==About this Structure==		==About this Structure==
-	~~2V6W~~ is a 2 ~~chains~~ structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA].	+	[[2v6w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V6W OCA].
	[[Category: Betzel, C.]]		[[Category: Betzel, C.]]
	[[Category: Brauer, A B.E.]]		[[Category: Brauer, A B.E.]]
Line 26:		Line 20:
	[[Category: Nucleic acid trna identity]]		[[Category: Nucleic acid trna identity]]
	[[Category: Rna]]		[[Category: Rna]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 11:21:22 2009''