2vih - Revision history

OCA at 15:21, 13 December 2023

OCA — Wed, 13 Dec 2023 15:21:19 GMT

←Older revision		Revision as of 15:21, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2vih' size='340' side='right'caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2vih' size='340' side='right'caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43504 Atcc 43504~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[2vhg\|2vhg]]~~, [[~~2a6m~~\|~~2a6m~~]]~~, [[2a6o\|2a6o]]</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [https://pdbe.org/2vih PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [https://www.ebi.ac.uk/pdbsum/2vih PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [https://pdbe.org/2vih PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [https://www.ebi.ac.uk/pdbsum/2vih PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q933Z0_HELPX Q933Z0_HELPX]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 43504~~]]	+	[[Category: Helicobacter pylori]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Barabas, O]]	+	[[Category: Barabas O]]
-	[[Category: Chandler, M]]	+	[[Category: Chandler M]]
-	[[Category: Dyda, F]]	+	[[Category: Dyda F]]
-	[[Category: Guynet, C]]	+	[[Category: Guynet C]]
-	[[Category: Hickman~~, A B~~]]	+	[[Category: Hickman AB]]
-	[[Category: Ronning~~, D R~~]]	+	[[Category: Ronning DR]]
-	[[Category: Ton-Hoang, B]]	+	[[Category: Ton-Hoang B]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Dna stem loop]]~~	+
-	~~[[Category: Dna-binding protein]]~~	+
-	~~[[Category: Huh motif]]~~	+
-	~~[[Category: Protein-dna complex]]~~	+
-	~~[[Category: Transposition~~]]	+

OCA at 11:38, 30 March 2022

OCA — Wed, 30 Mar 2022 11:38:05 GMT

←Older revision		Revision as of 11:38, 30 March 2022
Line 3:		Line 3:
	<StructureSection load='2vih' size='340' side='right'caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2vih' size='340' side='right'caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VIH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [~~http~~://pdbe.org/2vih PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vih PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [https://pdbe.org/2vih PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [https://www.ebi.ac.uk/pdbsum/2vih PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:59, 25 June 2020

OCA — Thu, 25 Jun 2020 07:59:39 GMT

←Older revision		Revision as of 07:59, 25 June 2020
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH Left END 26-MER DNA==		==CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH Left END 26-MER DNA==
-	<StructureSection load='2vih' size='340' side='right' caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='2vih' size='340' side='right'caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VIH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://pdbe.org/2vih PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://pdbe.org/2vih PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 28:

	==See Also==		==See Also==
-	*[[Transposase\|Transposase]]	+	*[[Transposase 3D structures\|Transposase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43504]]		[[Category: Atcc 43504]]
		+	[[Category: Large Structures]]
	[[Category: Barabas, O]]		[[Category: Barabas, O]]
	[[Category: Chandler, M]]		[[Category: Chandler, M]]

OCA at 21:21, 19 September 2018

OCA — Wed, 19 Sep 2018 21:21:20 GMT

←Older revision		Revision as of 21:21, 19 September 2018
Line 1:		Line 1:
-	==CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH ~~LEFT~~ END 26-MER DNA==	+
		+	==CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH Left END 26-MER DNA==
	<StructureSection load='2vih' size='340' side='right' caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2vih' size='340' side='right' caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://pdbe.org/2vih PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://pdbe.org/2vih PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vih ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vih_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vih_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 40:		Line 41:
	[[Category: Ronning, D R]]		[[Category: Ronning, D R]]
	[[Category: Ton-Hoang, B]]		[[Category: Ton-Hoang, B]]
		+	[[Category: Dna binding protein]]
	[[Category: Dna stem loop]]		[[Category: Dna stem loop]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]

OCA at 03:44, 10 February 2016

OCA — Wed, 10 Feb 2016 03:44:18 GMT

←Older revision		Revision as of 03:44, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='2vih' size='340' side='right' caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2vih' size='340' side='right' caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Helicobacter_pylori Helicobacter pylori~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43504 Atcc 43504]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://pdbe.org/2vih PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vih ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vih" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Transposase\|Transposase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Helicobacter pylori~~]]	+	[[Category: Atcc 43504]]
	[[Category: Barabas, O]]		[[Category: Barabas, O]]
	[[Category: Chandler, M]]		[[Category: Chandler, M]]

OCA at 14:24, 19 January 2015

OCA — Mon, 19 Jan 2015 14:24:09 GMT

←Older revision		Revision as of 14:24, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
-	[[Category: Barabas, O.]]	+	[[Category: Barabas, O]]
-	[[Category: Chandler, M.]]	+	[[Category: Chandler, M]]
-	[[Category: Dyda, F.]]	+	[[Category: Dyda, F]]
-	[[Category: Guynet, C.]]	+	[[Category: Guynet, C]]
-	[[Category: Hickman, A B.]]	+	[[Category: Hickman, A B]]
-	[[Category: Ronning, D R.]]	+	[[Category: Ronning, D R]]
-	[[Category: Ton-Hoang, B.]]	+	[[Category: Ton-Hoang, B]]
	[[Category: Dna stem loop]]		[[Category: Dna stem loop]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]

OCA at 01:41, 1 October 2014

OCA — Wed, 01 Oct 2014 01:41:59 GMT

←Older revision		Revision as of 01:41, 1 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2vih.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA==
		+	<StructureSection load='2vih' size='340' side='right' caption='[[2vih]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VIH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vhg\|2vhg]], [[2a6m\|2a6m]], [[2a6o\|2a6o]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vih FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vih OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vih RCSB], [http://www.ebi.ac.uk/pdbsum/2vih PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vi/2vih_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The smallest known DNA transposases are those from the IS200/IS605 family. Here we show how the interplay of protein and DNA activates TnpA, the Helicobacter pylori IS608 transposase, for catalysis. First, transposon end binding causes a conformational change that aligns catalytically important protein residues within the active site. Subsequent precise cleavage at the left and right ends, the steps that liberate the transposon from its donor site, does not involve a site-specific DNA-binding domain. Rather, cleavage site recognition occurs by complementary base pairing with a TnpA-bound subterminal transposon DNA segment. Thus, the enzyme active site is constructed from elements of both protein and DNA, reminiscent of the interdependence of protein and RNA in the ribosome. Our structural results explain why the transposon ends are asymmetric and how the transposon selects a target site for integration, and they allow us to propose a molecular model for the entire transposition reaction.

-	~~{{STRUCTURE_2vih\| PDB=2vih \| SCENE= }}~~	+	Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection.,Barabas O, Ronning DR, Guynet C, Hickman AB, Ton-Hoang B, Chandler M, Dyda F Cell. 2008 Jan 25;132(2):208-20. PMID:18243097<ref>PMID:18243097</ref>

-	~~===CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18243097}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2vih]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Helicobacter_pylori Helicobacter pylori]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018243097<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
	[[Category: Barabas, O.]]		[[Category: Barabas, O.]]

OCA: Protected "2vih" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 18:22:02 GMT

Protected "2vih" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:22, 7 January 2013

OCA at 18:22, 7 January 2013

OCA — Mon, 07 Jan 2013 18:22:00 GMT

←Older revision		Revision as of 18:22, 7 January 2013
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-	{{Seed}}
	[[Image:2vih.png\|left\|200px]]		[[Image:2vih.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2vih\| PDB=2vih \| SCENE= }}		{{STRUCTURE_2vih\| PDB=2vih \| SCENE= }}

	===CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA===		===CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18243097}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18243097 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_18243097}}		{{ABSTRACT_PUBMED_18243097}}

	==About this Structure==		==About this Structure==
-	~~2VIH~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA].	+	[[2vih]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18243097~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018243097</ref><references group="xtra"/>
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
	[[Category: Barabas, O.]]		[[Category: Barabas, O.]]
Line 37:		Line 25:
	[[Category: Protein-dna complex]]		[[Category: Protein-dna complex]]
	[[Category: Transposition]]		[[Category: Transposition]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:10:12 2009''

OCA at 13:10, 17 February 2009

OCA — Tue, 17 Feb 2009 13:10:13 GMT

←Older revision		Revision as of 13:10, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2VIH is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA].	+	2VIH is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VIH OCA].

	==Reference==		==Reference==
-	Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection., Barabas O, Ronning DR, Guynet C, Hickman AB, Ton-Hoang B, Chandler M, Dyda F, Cell. 2008 Jan 25;132(2):208-20. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18243097 18243097]~~	+	<ref group="xtra">PMID:18243097</ref><references group="xtra"/>
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
-	[[Category: Single protein]]
	[[Category: Barabas, O.]]		[[Category: Barabas, O.]]
	[[Category: Chandler, M.]]		[[Category: Chandler, M.]]
Line 39:		Line 38:
	[[Category: Transposition]]		[[Category: Transposition]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 20~~:45:~~44 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:10:12 2009''