2vji - Revision history

OCA at 10:01, 9 May 2024

OCA — Thu, 09 May 2024 10:01:08 GMT

←Older revision		Revision as of 10:01, 9 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_HK620 Enterobacteria phage HK620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_HK620 Enterobacteria phage HK620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.38Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [https://pdbe.org/2vji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [https://www.ebi.ac.uk/pdbsum/2vji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [https://pdbe.org/2vji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [https://www.ebi.ac.uk/pdbsum/2vji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 21:

	==See Also==		==See Also==
-	*[[Tailspike protein\|Tailspike protein]]	+	*[[Tailspike protein 3D structures\|Tailspike protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 20:54, 12 April 2023

OCA — Wed, 12 Apr 2023 20:54:51 GMT

←Older revision		Revision as of 20:54, 12 April 2023
Line 3:		Line 3:
	<StructureSection load='2vji' size='340' side='right'caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vji' size='340' side='right'caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bphk6 Bphk6~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_HK620 Enterobacteria phage HK620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vjj\|2vjj]]</div></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [https://pdbe.org/2vji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [https://www.ebi.ac.uk/pdbsum/2vji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [https://pdbe.org/2vji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [https://www.ebi.ac.uk/pdbsum/2vji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9AYY6_BPHK6 Q9AYY6_BPHK6]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bphk6~~]]	+	[[Category: Enterobacteria phage HK620]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Barbirz, S]]	+	[[Category: Barbirz S]]
-	[[Category: Heinemann, U]]	+	[[Category: Heinemann U]]
-	[[Category: Mueller~~, J J~~]]	+	[[Category: Mueller JJ]]
-	[[Category: Seckler, R]]	+	[[Category: Seckler R]]
-	[[Category: Uetrecht, C]]	+	[[Category: Uetrecht C]]
-	~~[[Category: Endo-n-acetylglucosaminidase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Right-handed parallel beta-helix]]~~	+
-	~~[[Category: Tailspike]]~~	+
-	~~[[Category: Viral adhesion protein]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 10:46, 7 July 2021

OCA — Wed, 07 Jul 2021 10:46:39 GMT

←Older revision		Revision as of 10:46, 7 July 2021
Line 3:		Line 3:
	<StructureSection load='2vji' size='340' side='right'caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vji' size='340' side='right'caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VJI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VJI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vjj\|2vjj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vjj\|2vjj]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [~~http~~://pdbe.org/2vji PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vji PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [https://pdbe.org/2vji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [https://www.ebi.ac.uk/pdbsum/2vji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 17:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 2vji" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2vji" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tailspike protein\|Tailspike protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:12, 10 May 2019

OCA — Fri, 10 May 2019 12:12:19 GMT

←Older revision		Revision as of 12:12, 10 May 2019
Line 1:		Line 1:

	==Tailspike protein of E.coli bacteriophage HK620==		==Tailspike protein of E.coli bacteriophage HK620==
-	<StructureSection load='2vji' size='340' side='right' caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>	+	<StructureSection load='2vji' size='340' side='right'caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJI FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Bphk6]]		[[Category: Bphk6]]
		+	[[Category: Large Structures]]
	[[Category: Barbirz, S]]		[[Category: Barbirz, S]]
	[[Category: Heinemann, U]]		[[Category: Heinemann, U]]

OCA at 10:12, 4 August 2016

OCA — Thu, 04 Aug 2016 10:12:08 GMT

←Older revision		Revision as of 10:12, 4 August 2016
Line 1:		Line 1:
		+
	==Tailspike protein of E.coli bacteriophage HK620==		==Tailspike protein of E.coli bacteriophage HK620==
	<StructureSection load='2vji' size='340' side='right' caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vji' size='340' side='right' caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Salmonella_phage_hk620 Salmonella phage hk620~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk6 Bphk6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vjj\|2vjj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vjj\|2vjj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [http://www.ebi.ac.uk/pdbsum/2vji PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [http://pdbe.org/2vji PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [http://www.ebi.ac.uk/pdbsum/2vji PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vji ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vji" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Salmonella phage hk620~~]]	+	[[Category: Bphk6]]
	[[Category: Barbirz, S]]		[[Category: Barbirz, S]]
	[[Category: Heinemann, U]]		[[Category: Heinemann, U]]

OCA at 21:37, 3 January 2015

OCA — Sat, 03 Jan 2015 21:37:52 GMT

←Older revision		Revision as of 21:37, 3 January 2015
Line 2:		Line 2:
	<StructureSection load='2vji' size='340' side='right' caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>		<StructureSection load='2vji' size='340' side='right' caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. <br>	+	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VJI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vjj\|2vjj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vjj\|2vjj]]</td></tr>
-	<tr~~><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class~~='~~plainlinks~~'~~>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [http://www.ebi.ac.uk/pdbsum/2vji PDBsum]</span></td></tr>
-	~~<tr~~><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [http://www.ebi.ac.uk/pdbsum/2vji PDBsum]</span></td></tr>	+	</table>
-	<table>	+
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 13:
	Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related.,Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R Mol Microbiol. 2008 Jun 11;. PMID:18547389<ref>PMID:18547389</ref>		Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related.,Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R Mol Microbiol. 2008 Jun 11;. PMID:18547389<ref>PMID:18547389</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 21:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Salmonella phage hk620]]		[[Category: Salmonella phage hk620]]
-	[[Category: Barbirz, S.]]	+	[[Category: Barbirz, S]]
-	[[Category: Heinemann, U.]]	+	[[Category: Heinemann, U]]
-	[[Category: Mueller, J J.]]	+	[[Category: Mueller, J J]]
-	[[Category: Seckler, R.]]	+	[[Category: Seckler, R]]
-	[[Category: Uetrecht, C.]]	+	[[Category: Uetrecht, C]]
	[[Category: Endo-n-acetylglucosaminidase]]		[[Category: Endo-n-acetylglucosaminidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:43, 7 May 2014

OCA — Wed, 07 May 2014 08:43:20 GMT

←Older revision		Revision as of 08:43, 7 May 2014
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-	[[~~Image:~~2vji.~~png~~\|~~left~~\|~~200px~~]]	+	==Tailspike protein of E.coli bacteriophage HK620==
		+	<StructureSection load='2vji' size='340' side='right' caption='[[2vji]], [[Resolution\|resolution]] 1.38Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PG0:2-(2-METHOXYETHOXY)ETHANOL'>PG0</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vjj\|2vjj]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vji OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vji RCSB], [http://www.ebi.ac.uk/pdbsum/2vji PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacteriophage HK620 infects Escherichia coli H and is closely related to Shigella phage Sf6 and Salmonella phage P22. All three Podoviridae recognize and cleave their respective host cell receptor polysaccharide by homotrimeric tailspike proteins. The three proteins exhibit high sequence identity in the 110 residues of their N-terminal particle-binding domains, but no apparent sequence similarity in their major, receptor-binding parts. We have biochemically characterized the receptor-binding part of HK620 tailspike and determined its crystal structure to 1.38 A resolution. Its major domain is a right-handed parallel beta-helix, as in Sf6 and P22 tailspikes. HK620 tailspike has endo-N-acetylglucosaminidase activity and produces hexasaccharides of an O18A1-type O-antigen. As indicated by the structure of a hexasaccharide complex determined at 1.6 A resolution, the endoglycosidase-active sites are located intramolecularly, as in P22, and not between subunits, as in Sf6 tailspike. In contrast, the extreme C-terminal domain of HK620 tailspike forms a beta-sandwich, as in Sf6 and unlike P22 tailspike. Despite the different folds, structure-based sequence alignments of the C-termini reveal motifs conserved between the three proteins. We propose that the tailspike genes of P22, Sf6 and HK620 have a common precursor and are not mosaics of unrelated gene fragments.

-	~~<!--~~	+	Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related.,Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R Mol Microbiol. 2008 Jun 11;. PMID:18547389<ref>PMID:18547389</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_2vji"~~, ~~creates the "Structure Box" on the page.~~	+
-	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded)~~,	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_2vji\| PDB=2vji \| SCENE= }}~~	+

-	~~===Tailspike protein~~ of ~~E.coli bacteriophage HK620===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_18547389}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 18547389 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_18547389}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2vji]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018547389<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Salmonella phage hk620]]		[[Category: Salmonella phage hk620]]
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]

OCA: Protected "2vji" [edit=sysop:move=sysop]

OCA — Wed, 25 Jan 2012 05:42:46 GMT

Protected "2vji" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:42, 25 January 2012

OCA at 05:42, 25 January 2012

OCA — Wed, 25 Jan 2012 05:42:45 GMT

←Older revision		Revision as of 05:42, 25 January 2012
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-	{{Seed}}
	[[Image:2vji.png\|left\|200px]]		[[Image:2vji.png\|left\|200px]]

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	{{STRUCTURE_2vji\| PDB=2vji \| SCENE= }}		{{STRUCTURE_2vji\| PDB=2vji \| SCENE= }}

-	===~~TAILSPIKE PROTEIN OF~~ E.~~COLI BACTERIOPHAGE~~ HK620===	+	===Tailspike protein of E.coli bacteriophage HK620===


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	==About this Structure==		==About this Structure==
-	~~2VJI is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_hk620 Enterobacteria~~ phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA].	+	[[2vji]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_phage_hk620 Salmonella phage hk620]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VJI OCA].

	==Reference==		==Reference==
-	Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related., Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R, Mol Microbiol. 2008 Jun 11;. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18547389 18547389]~~	+	<ref group="xtra">PMID:018547389</ref><references group="xtra"/>
-	[[Category: ~~Enterobacteria~~ phage hk620]]	+	[[Category: Salmonella phage hk620]]
-	~~[[Category: Single protein~~]]	+
	[[Category: Barbirz, S.]]		[[Category: Barbirz, S.]]
	[[Category: Heinemann, U.]]		[[Category: Heinemann, U.]]
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	[[Category: Viral adhesion protein]]		[[Category: Viral adhesion protein]]
	[[Category: Viral protein]]		[[Category: Viral protein]]
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-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:25:46 2008''

OCA at 12:25, 28 July 2008

OCA — Mon, 28 Jul 2008 12:25:53 GMT

←Older revision		Revision as of 12:25, 28 July 2008
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-	[[Image:2vji.~~jpg~~\|left\|200px]]	+	[[Image:2vji.png\|left\|200px]]

	<!--		<!--
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	[[Category: Viral protein]]		[[Category: Viral protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Jul ~~3 11~~:22:48 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:25:46 2008''