2vk2 - Revision history

OCA at 15:22, 13 December 2023

OCA — Wed, 13 Dec 2023 15:22:25 GMT

←Older revision		Revision as of 15:22, 13 December 2023
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	<StructureSection load='2vk2' size='340' side='right'caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='2vk2' size='340' side='right'caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [https://pdbe.org/2vk2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [https://pdbe.org/2vk2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YTFQ_ECOLI YTFQ_ECOLI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Horler~~, R S.P~~]]	+	[[Category: Horler RSP]]
-	[[Category: Muller, A]]	+	[[Category: Muller A]]
-	[[Category: Thomas~~, G H~~]]	+	[[Category: Thomas GH]]
-	[[Category: Wilson~~, K S]]~~	+	[[Category: Wilson KS]]
-	~~[[Category: Abc transport]]~~	+
-	~~[[Category: Galactofuranose]]~~	+
-	~~[[Category: Periplasm]]~~	+
-	~~[[Category: Transport]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 11:38, 30 March 2022

OCA — Wed, 30 Mar 2022 11:38:45 GMT

←Older revision		Revision as of 11:38, 30 March 2022
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	<StructureSection load='2vk2' size='340' side='right'caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='2vk2' size='340' side='right'caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [~~http~~://pdbe.org/2vk2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [https://pdbe.org/2vk2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [https://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:02, 25 June 2020

OCA — Thu, 25 Jun 2020 08:02:40 GMT

←Older revision		Revision as of 08:02, 25 June 2020
Line 1:		Line 1:

	==Crystal structure of a galactofuranose binding protein==		==Crystal structure of a galactofuranose binding protein==
-	<StructureSection load='2vk2' size='340' side='right' caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='2vk2' size='340' side='right'caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://pdbe.org/2vk2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://pdbe.org/2vk2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 28:

	==See Also==		==See Also==
-	*[[ABC transporter\|ABC transporter]]	+	*[[ABC transporter 3D structures\|ABC transporter 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Ecoli]]		[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Horler, R S.P]]		[[Category: Horler, R S.P]]
	[[Category: Muller, A]]		[[Category: Muller, A]]

OCA at 21:09, 19 September 2018

OCA — Wed, 19 Sep 2018 21:09:59 GMT

←Older revision		Revision as of 21:09, 19 September 2018
Line 1:		Line 1:

-	==~~CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN~~==	+	==Crystal structure of a galactofuranose binding protein==
	<StructureSection load='2vk2' size='340' side='right' caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='2vk2' size='340' side='right' caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vk2_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vk2_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 40:		Line 40:
	[[Category: Abc transport]]		[[Category: Abc transport]]
	[[Category: Galactofuranose]]		[[Category: Galactofuranose]]
		+	[[Category: Periplasm]]
	[[Category: Transport]]		[[Category: Transport]]
	[[Category: Transport protein]]		[[Category: Transport protein]]

OCA at 13:49, 11 August 2016

OCA — Thu, 11 Aug 2016 13:49:44 GMT

←Older revision		Revision as of 13:49, 11 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN==		==CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN==
	<StructureSection load='2vk2' size='340' side='right' caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='2vk2' size='340' side='right' caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://pdbe.org/2vk2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vk2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vk2 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vk2" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Ecoli]]
	[[Category: Horler, R S.P]]		[[Category: Horler, R S.P]]
	[[Category: Muller, A]]		[[Category: Muller, A]]

OCA at 18:20, 19 January 2015

OCA — Mon, 19 Jan 2015 18:20:35 GMT

←Older revision		Revision as of 18:20, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Horler, R S.P.]]	+	[[Category: Horler, R S.P]]
-	[[Category: Muller, A.]]	+	[[Category: Muller, A]]
-	[[Category: Thomas, G H.]]	+	[[Category: Thomas, G H]]
-	[[Category: Wilson, K S.]]	+	[[Category: Wilson, K S]]
	[[Category: Abc transport]]		[[Category: Abc transport]]
	[[Category: Galactofuranose]]		[[Category: Galactofuranose]]
	[[Category: Transport]]		[[Category: Transport]]
	[[Category: Transport protein]]		[[Category: Transport protein]]

OCA at 10:12, 29 September 2014

OCA — Mon, 29 Sep 2014 10:12:53 GMT

←Older revision		Revision as of 10:12, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2vk2.~~png\|left~~\|200px]]	+	==CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN==
		+	<StructureSection load='2vk2' size='340' side='right' caption='[[2vk2]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VK2 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GZL:BETA-D-GALACTOFURANOSE'>GZL</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vk2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vk2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vk2 RCSB], [http://www.ebi.ac.uk/pdbsum/2vk2 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/2vk2_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The widespread utilization of sugars by microbes is reflected in the diversity and multiplicity of cellular transporters used to acquire these compounds from the environment. The model bacterium Escherichia coli has numerous transporters that allow it to take up hexoses and pentoses, which recognize the more abundant pyranose forms of these sugars. Here we report the biochemical and structural characterization of a transporter protein YtfQ from E. coli that forms part of an uncharacterized ABC transporter system. Remarkably the crystal structure of this protein, solved to 1.2 A using x-ray crystallography, revealed that YtfQ binds a single molecule of galactofuranose in its ligand binding pocket. Selective binding of galactofuranose over galactopyranose was also observed using NMR methods that determined the form of the sugar released from the protein. The pattern of expression of the ytfQRTyjfF operon encoding this transporter mirrors that of the high affinity galactopyranose transporter of E. coli, suggesting that this bacterium has evolved complementary transporters that enable it to use all the available galactose present during carbon limiting conditions.

-	~~{{STRUCTURE_2vk2\| PDB=2vk2 \| SCENE= }}~~	+	Furanose-specific sugar transport: characterization of a bacterial galactofuranose-binding protein.,Horler RS, Muller A, Williamson DC, Potts JR, Wilson KS, Thomas GH J Biol Chem. 2009 Nov 6;284(45):31156-63. Epub 2009 Sep 10. PMID:19744923<ref>PMID:19744923</ref>

-	~~===CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19744923}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2vk2]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA].~~	+

	==See Also==		==See Also==
	*[[ABC transporter\|ABC transporter]]		*[[ABC transporter\|ABC transporter]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019744923<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Horler, R S.P.]]		[[Category: Horler, R S.P.]]

OCA at 20:12, 20 October 2012

OCA — Sat, 20 Oct 2012 20:12:33 GMT

←Older revision		Revision as of 20:12, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2vk2]] is a 1 chain structure ~~of [[ABC transporter]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA].	+	[[2vk2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA].

	==See Also==		==See Also==

OCA: Protected "2vk2" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 09:44:32 GMT

Protected "2vk2" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:44, 27 July 2012

OCA at 09:44, 27 July 2012

OCA — Fri, 27 Jul 2012 09:44:31 GMT

←Older revision		Revision as of 09:44, 27 July 2012
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-	{{Seed}}
	[[Image:2vk2.png\|left\|200px]]		[[Image:2vk2.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2vk2", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2vk2\| PDB=2vk2 \| SCENE= }}		{{STRUCTURE_2vk2\| PDB=2vk2 \| SCENE= }}

	===CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN===		===CRYSTAL STRUCTURE OF A GALACTOFURANOSE BINDING PROTEIN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19744923}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19744923 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19744923}}		{{ABSTRACT_PUBMED_19744923}}

	==About this Structure==		==About this Structure==
-	~~2VK2~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA].	+	[[2vk2]] is a 1 chain structure of [[ABC transporter]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VK2 OCA].
		+
		+	==See Also==
		+	*[[ABC transporter\|ABC transporter]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19744923~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019744923</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Horler, R S.P.]]		[[Category: Horler, R S.P.]]
Line 31:		Line 22:
	[[Category: Abc transport]]		[[Category: Abc transport]]
	[[Category: Galactofuranose]]		[[Category: Galactofuranose]]
-	[[Category: Periplasm]]
	[[Category: Transport]]		[[Category: Transport]]
	[[Category: Transport protein]]		[[Category: Transport protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 11 22:45:34 2009''