2vmi - Revision history

OCA at 11:40, 30 March 2022

OCA — Wed, 30 Mar 2022 11:40:27 GMT

←Older revision		Revision as of 11:40, 30 March 2022
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	<StructureSection load='2vmi' size='340' side='right'caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vmi' size='340' side='right'caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VMI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VMI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2vmg\|2vmg]], [[2vmh\|2vmh]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [~~http~~://pdbe.org/2vmi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vmi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [https://pdbe.org/2vmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [https://www.ebi.ac.uk/pdbsum/2vmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:09, 25 June 2020

OCA — Thu, 25 Jun 2020 08:09:21 GMT

←Older revision		Revision as of 08:09, 25 June 2020
Line 1:		Line 1:

	==The structure of seleno-methionine labelled CBM51 from Clostridium perfringens GH95==		==The structure of seleno-methionine labelled CBM51 from Clostridium perfringens GH95==
-	<StructureSection load='2vmi' size='340' side='right' caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='2vmi' size='340' side='right'caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VMI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VMI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://pdbe.org/2vmi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://pdbe.org/2vmi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Fibronectin\|Fibronectin]]	+	*[[Fibronectin 3D structures\|Fibronectin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus perfringens veillon and zuber 1898]]		[[Category: Bacillus perfringens veillon and zuber 1898]]
		+	[[Category: Large Structures]]
	[[Category: Abbott, D W]]		[[Category: Abbott, D W]]
	[[Category: Boraston, A B]]		[[Category: Boraston, A B]]

OCA at 21:25, 19 September 2018

OCA — Wed, 19 Sep 2018 21:25:59 GMT

←Older revision		Revision as of 21:25, 19 September 2018
Line 1:		Line 1:
-	==~~THE STRUCTURE OF SELENO~~-~~METHIONINE LABELLED~~ CBM51 ~~FROM CLOSTRIDIUM PERFRINGENS~~ GH95==	+
		+	==The structure of seleno-methionine labelled CBM51 from Clostridium perfringens GH95==
	<StructureSection load='2vmi' size='340' side='right' caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vmi' size='340' side='right' caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://pdbe.org/2vmi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://pdbe.org/2vmi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vmi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vmi_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vmi_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 43:		Line 44:
	[[Category: Fucosidase]]		[[Category: Fucosidase]]
	[[Category: Galactose]]		[[Category: Galactose]]
		+	[[Category: Sugar binding protein]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]

OCA at 12:17, 8 February 2016

OCA — Mon, 08 Feb 2016 12:17:59 GMT

←Older revision		Revision as of 12:17, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='2vmi' size='340' side='right' caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vmi' size='340' side='right' caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_perfringens Clostridium~~ perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_perfringens"_veillon_and_zuber_1898 "bacillus perfringens" veillon and zuber 1898]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://pdbe.org/2vmi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vmi ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vmi" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clostridium~~ perfringens]]	+	[[Category: Bacillus perfringens veillon and zuber 1898]]
	[[Category: Abbott, D W]]		[[Category: Abbott, D W]]
	[[Category: Boraston, A B]]		[[Category: Boraston, A B]]

OCA at 16:02, 19 January 2015

OCA — Mon, 19 Jan 2015 16:02:05 GMT

←Older revision		Revision as of 16:02, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium perfringens]]		[[Category: Clostridium perfringens]]
-	[[Category: Abbott, D W.]]	+	[[Category: Abbott, D W]]
-	[[Category: Boraston, A B.]]	+	[[Category: Boraston, A B]]
-	[[Category: Finn, R.]]	+	[[Category: Finn, R]]
-	[[Category: Gregg, K.]]	+	[[Category: Gregg, K]]
	[[Category: Carbohydrate-binding module]]		[[Category: Carbohydrate-binding module]]
	[[Category: Clostridium perfringen]]		[[Category: Clostridium perfringen]]

OCA at 08:15, 29 September 2014

OCA — Mon, 29 Sep 2014 08:15:32 GMT

←Older revision		Revision as of 08:15, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2vmi.~~png~~\|~~left~~\|200px]]	+	==THE STRUCTURE OF SELENO-METHIONINE LABELLED CBM51 FROM CLOSTRIDIUM PERFRINGENS GH95==
		+	<StructureSection load='2vmi' size='340' side='right' caption='[[2vmi]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VMI FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2vmg\|2vmg]], [[2vmh\|2vmh]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vmi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vmi RCSB], [http://www.ebi.ac.uk/pdbsum/2vmi PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vmi_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The genomes of myonecrotic Clostridium perfringens isolates contain genes encoding a large and fascinating array of highly modular glycoside hydrolase enzymes. Although the catalytic activities of many of these enzymes are somewhat predictable based on their amino acid sequences, the functions of their abundant ancillary modules are not and remain poorly studied. Here, we present the structural and functional analysis of a new family of ancillary carbohydrate-binding modules (CBMs), CBM51, which was previously annotated in data bases as the novel putative CBM domain. The high resolution crystal structures of two CBM51 members, GH95CBM51 and GH98CBM51, from a putative family 95 alpha-fucosidase and from a family 98 blood group A/B antigen-specific endo-beta-galactosidase, respectively, showed them to have highly similar beta-sandwich folds. However, GH95CBM51 was shown by glycan microarray screening, isothermal titration calorimetry, and x-ray crystallography to bind galactose residues, whereas the same analyses of GH98CBM51 revealed specificity for the blood group A/B antigens through non-conserved interactions. Overall, this work identifies a new family of CBMs with many members having apparent specificity for eukaryotic glycans, in keeping with the glycan-rich environment C. perfringens would experience in its host. However, a wider bioinformatic analysis of this CBM family also indicated a large number of members in non-pathogenic environmental bacteria, suggesting a role in the recognition of environmental glycans.

-	~~{{STRUCTURE_2vmi\| PDB=2vmi \| SCENE= }}~~	+	Divergent modes of glycan recognition by a new family of carbohydrate-binding modules.,Gregg KJ, Finn R, Abbott DW, Boraston AB J Biol Chem. 2008 May 2;283(18):12604-13. Epub 2008 Feb 21. PMID:18292090<ref>PMID:18292090</ref>

-	~~===THE STRUCTURE OF SELENO-METHIONINE LABELLED CBM51 FROM CLOSTRIDIUM PERFRINGENS GH95===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18292090}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2vmi]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Clostridium_perfringens Clostridium perfringens]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA].~~	+

	==See Also==		==See Also==
	*[[Fibronectin\|Fibronectin]]		*[[Fibronectin\|Fibronectin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:018292090<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Clostridium perfringens]]		[[Category: Clostridium perfringens]]
	[[Category: Abbott, D W.]]		[[Category: Abbott, D W.]]

OCA at 10:06, 20 October 2012

OCA — Sat, 20 Oct 2012 10:06:38 GMT

←Older revision		Revision as of 10:06, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[2vmi]] is a 1 chain structure ~~of [[Fibronectin]]~~ with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA].	+	[[2vmi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA].

	==See Also==		==See Also==

OCA at 01:00, 26 July 2012

OCA — Thu, 26 Jul 2012 01:00:39 GMT

←Older revision		Revision as of 01:00, 26 July 2012
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	[[Image:2vmi.png\|left\|200px]]		[[Image:2vmi.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2vmi", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2vmi\| PDB=2vmi \| SCENE= }}		{{STRUCTURE_2vmi\| PDB=2vmi \| SCENE= }}

	===THE STRUCTURE OF SELENO-METHIONINE LABELLED CBM51 FROM CLOSTRIDIUM PERFRINGENS GH95===		===THE STRUCTURE OF SELENO-METHIONINE LABELLED CBM51 FROM CLOSTRIDIUM PERFRINGENS GH95===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18292090}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18292090 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18292090}}		{{ABSTRACT_PUBMED_18292090}}

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	==See Also==		==See Also==
-	*[[Fibronectin]]	+	*[[Fibronectin\|Fibronectin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18292090~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018292090</ref><references group="xtra"/>
	[[Category: Clostridium perfringens]]		[[Category: Clostridium perfringens]]
	[[Category: Abbott, D W.]]		[[Category: Abbott, D W.]]

OCA: Protected "2vmi" [edit=sysop:move=sysop]

OCA — Sun, 26 Dec 2010 20:45:07 GMT

Protected "2vmi" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:45, 26 December 2010

OCA at 20:45, 26 December 2010

OCA — Sun, 26 Dec 2010 20:45:06 GMT

←Older revision		Revision as of 20:45, 26 December 2010
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-	{{Seed}}
	[[Image:2vmi.png\|left\|200px]]		[[Image:2vmi.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2VMI~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA].	+	[[2vmi]] is a 1 chain structure of [[Fibronectin]] with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VMI OCA].
		+
		+	==See Also==
		+	*[[Fibronectin]]

	==Reference==		==Reference==
Line 34:		Line 36:
	[[Category: Galactose]]		[[Category: Galactose]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 21:56:30 2009''