2vud - Revision history

OCA at 15:32, 13 December 2023

OCA — Wed, 13 Dec 2023 15:32:14 GMT

←Older revision		Revision as of 15:32, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2vud' size='340' side='right'caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vud' size='340' side='right'caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VUD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VUD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [https://pdbe.org/2vud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [https://www.ebi.ac.uk/pdbsum/2vud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vud ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [https://pdbe.org/2vud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [https://www.ebi.ac.uk/pdbsum/2vud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vud ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9HYN5_PSEAE Q9HYN5_PSEAE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Beha, S]]
-	[[Category: Imberty, A]]
-	[[Category: Marotte, K]]
-	[[Category: Mitchell, E P]]
-	[[Category: Roy, R]]
-	[[Category: Sabin, C]]
-	[[Category: Fucose]]
-	[[Category: Glycomimetic]]
-	[[Category: Lectin]]
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Sugar binding protein~~]]	+	[[Category: Beha S]]
-	[[Category: ~~Sugar-binding protein~~]]	+	[[Category: Imberty A]]
		+	[[Category: Marotte K]]
		+	[[Category: Mitchell EP]]
		+	[[Category: Roy R]]
		+	[[Category: Sabin C]]

OCA at 10:49, 7 July 2021

OCA — Wed, 07 Jul 2021 10:49:14 GMT

←Older revision		Revision as of 10:49, 7 July 2021
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	<StructureSection load='2vud' size='340' side='right'caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vud' size='340' side='right'caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VUD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VUD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [~~http~~://pdbe.org/2vud PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vud PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vud ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [https://pdbe.org/2vud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [https://www.ebi.ac.uk/pdbsum/2vud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vud ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 18:08, 14 August 2019

OCA — Wed, 14 Aug 2019 18:08:39 GMT

←Older revision		Revision as of 18:08, 14 August 2019
Line 1:		Line 1:

	==PA-IIL lectin from pseudomonas aeruginosa complexed with fucose- derived glycomimetics==		==PA-IIL lectin from pseudomonas aeruginosa complexed with fucose- derived glycomimetics==
-	<StructureSection load='2vud' size='340' side='right' caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='2vud' size='340' side='right'caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vud_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vud_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Beha, S]]		[[Category: Beha, S]]
	[[Category: Imberty, A]]		[[Category: Imberty, A]]

OCA at 07:58, 8 November 2017

OCA — Wed, 08 Nov 2017 07:58:07 GMT

←Older revision		Revision as of 07:58, 8 November 2017
Line 1:		Line 1:
-	==PA-IIL ~~LECTIN FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH FUCOSE~~-~~DERIVED GLYCOMIMETICS~~==	+
		+	==PA-IIL lectin from pseudomonas aeruginosa complexed with fucose- derived glycomimetics==
	<StructureSection load='2vud' size='340' side='right' caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vud' size='340' side='right' caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://pdbe.org/2vud PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://pdbe.org/2vud PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vud ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 30:
	[[Category: Lectin]]		[[Category: Lectin]]
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
		+	[[Category: Sugar binding protein]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]

OCA at 11:31, 7 February 2016

OCA — Sun, 07 Feb 2016 11:31:59 GMT

←Older revision		Revision as of 11:31, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2vud' size='340' side='right' caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2vud' size='340' side='right' caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://pdbe.org/2vud PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vud ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Beha, S]]		[[Category: Beha, S]]
	[[Category: Imberty, A]]		[[Category: Imberty, A]]
Line 29:		Line 28:
	[[Category: Glycomimetic]]		[[Category: Glycomimetic]]
	[[Category: Lectin]]		[[Category: Lectin]]
		+	[[Category: Pseudomonas aeruginosa]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]

OCA at 14:06, 19 January 2015

OCA — Mon, 19 Jan 2015 14:06:56 GMT

←Older revision		Revision as of 14:06, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Beha, S.]]	+	[[Category: Beha, S]]
-	[[Category: Imberty, A.]]	+	[[Category: Imberty, A]]
-	[[Category: Marotte, K.]]	+	[[Category: Marotte, K]]
-	[[Category: Mitchell, E P.]]	+	[[Category: Mitchell, E P]]
-	[[Category: Roy, R.]]	+	[[Category: Roy, R]]
-	[[Category: Sabin, C.]]	+	[[Category: Sabin, C]]
	[[Category: Fucose]]		[[Category: Fucose]]
	[[Category: Glycomimetic]]		[[Category: Glycomimetic]]
	[[Category: Lectin]]		[[Category: Lectin]]
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]

OCA at 01:37, 1 October 2014

OCA — Wed, 01 Oct 2014 01:37:02 GMT

←Older revision		Revision as of 01:37, 1 October 2014
Line 1:		Line 1:
-	~~[[Image:2vud.png\|left\|200px]]~~	+	==PA-IIL LECTIN FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH FUCOSE-DERIVED GLYCOMIMETICS==
-		+	<StructureSection load='2vud' size='340' side='right' caption='[[2vud]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~{{STRUCTURE_2vud\| PDB=2vud \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VUD FirstGlance]. <br>
-	===PA-IIL LECTIN FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH FUCOSE-DERIVED GLYCOMIMETICS===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=LZ0:[1-(2-OXOETHYL)-1H-1,2,3-TRIAZOL-5-YL]METHYL+6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE'>LZ0</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ovs\|1ovs]], [[1oxc\|1oxc]], [[1w8f\|1w8f]], [[2jdk\|2jdk]], [[1oux\|1oux]], [[1gzt\|1gzt]], [[2jdh\|2jdh]], [[2jdy\|2jdy]], [[1ous\|1ous]], [[2jdu\|2jdu]], [[1ovp\|1ovp]], [[2jdp\|2jdp]], [[1our\|1our]], [[1uzv\|1uzv]], [[2boj\|2boj]], [[2bp6\|2bp6]], [[2jdm\|2jdm]], [[2jdn\|2jdn]], [[1w43\|1w43]], [[1w8h\|1w8h]], [[2vuc\|2vuc]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vud RCSB], [http://www.ebi.ac.uk/pdbsum/2vud PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vu/2vud_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Beha, S.]]		[[Category: Beha, S.]]

OCA: Protected "2vud" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:00:16 GMT

Protected "2vud" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:00, 7 January 2013

OCA at 21:00, 7 January 2013

OCA — Mon, 07 Jan 2013 21:00:11 GMT

←Older revision		Revision as of 21:00, 7 January 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2vud.png\|left\|200px]]
-	[[Image:2vud.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2vud", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2vud\| PDB=2vud \| SCENE= }}		{{STRUCTURE_2vud\| PDB=2vud \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2VUD~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA].	+	[[2vud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA].
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Beha, S.]]		[[Category: Beha, S.]]
Line 27:		Line 20:
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 20:30:07 2009''

OCA at 17:30, 22 July 2009

OCA — Wed, 22 Jul 2009 17:30:09 GMT

←Older revision		Revision as of 17:30, 22 July 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2vud.jpg\|left\|200px]]

-	The ~~entry 2vud~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2vud", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2vud\| PDB=2vud \| SCENE= }}

-	~~Authors: Beha, S., Marotte, K., Sabin, C., Mitchell, E.P., Imberty, A., Roy, R.~~	+	===PA-IIL LECTIN FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH FUCOSE-DERIVED GLYCOMIMETICS===

-	Description: PA-IIL lectin from pseudomonas aeruginosa complexed with fucose-derived glycomimetics

		+	==About this Structure==
		+	2VUD is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VUD OCA].
		+	[[Category: Pseudomonas aeruginosa]]
		+	[[Category: Beha, S.]]
		+	[[Category: Imberty, A.]]
		+	[[Category: Marotte, K.]]
		+	[[Category: Mitchell, E P.]]
		+	[[Category: Roy, R.]]
		+	[[Category: Sabin, C.]]
		+	[[Category: Fucose]]
		+	[[Category: Glycomimetic]]
		+	[[Category: Lectin]]
		+	[[Category: Pseudomonas aeruginosa]]
		+	[[Category: Sugar-binding protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jun 11 09~~:04:~~36 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 20:30:07 2009''