2vxx - Revision history

OCA at 15:37, 13 December 2023

OCA — Wed, 13 Dec 2023 15:37:06 GMT

←Older revision		Revision as of 15:37, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2vxx' size='340' side='right'caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2vxx' size='340' side='right'caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pcc_6301 Pcc 6301~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VXX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [https://pdbe.org/2vxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [https://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [https://pdbe.org/2vxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [https://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8DL82_THEVB Q8DL82_THEVB]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pcc 6301~~]]	+	[[Category: Synechococcus elongatus]]
-	[[Category: Franceschini, S]]	+	[[Category: Franceschini S]]
-	[[Category: Ilari, A]]	+	[[Category: Ilari A]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Dna-binding protein]]~~	+
-	~~[[Category: Dp]]~~	+
-	~~[[Category: Ferroxidase centre]]~~	+
-	~~[[Category: Iron binding]]~~	+
-	~~[[Category: Oxidation]]~~	+
-	~~[[Category: Stress response protein~~]]	+

OCA at 11:48, 30 March 2022

OCA — Wed, 30 Mar 2022 11:48:49 GMT

←Older revision		Revision as of 11:48, 30 March 2022
Line 3:		Line 3:
	<StructureSection load='2vxx' size='340' side='right'caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2vxx' size='340' side='right'caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VXX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [~~http~~://pdbe.org/2vxx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [https://pdbe.org/2vxx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [https://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:40, 25 June 2020

OCA — Thu, 25 Jun 2020 08:40:51 GMT

←Older revision		Revision as of 08:40, 25 June 2020
Line 1:		Line 1:

	==X-ray structure of DpsA from Thermosynechococcus elongatus==		==X-ray structure of DpsA from Thermosynechococcus elongatus==
-	<StructureSection load='2vxx' size='340' side='right' caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='2vxx' size='340' side='right'caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VXX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://pdbe.org/2vxx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://pdbe.org/2vxx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pcc 6301]]		[[Category: Pcc 6301]]
	[[Category: Franceschini, S]]		[[Category: Franceschini, S]]

OCA at 21:14, 19 September 2018

OCA — Wed, 19 Sep 2018 21:14:19 GMT

←Older revision		Revision as of 21:14, 19 September 2018
Line 1:		Line 1:
-	==X-~~RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS~~==	+
		+	==X-ray structure of DpsA from Thermosynechococcus elongatus==
	<StructureSection load='2vxx' size='340' side='right' caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2vxx' size='340' side='right' caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://pdbe.org/2vxx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://pdbe.org/2vxx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/2vxx_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/2vxx_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 33:
	[[Category: Franceschini, S]]		[[Category: Franceschini, S]]
	[[Category: Ilari, A]]		[[Category: Ilari, A]]
		+	[[Category: Dna binding protein]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]
	[[Category: Dp]]		[[Category: Dp]]

OCA at 07:32, 7 February 2016

OCA — Sun, 07 Feb 2016 07:32:03 GMT

←Older revision		Revision as of 07:32, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2vxx' size='340' side='right' caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2vxx' size='340' side='right' caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Synechococcus_elongatus Synechococcus elongatus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pcc_6301 Pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://pdbe.org/2vxx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vxx ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vxx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Synechococcus elongatus~~]]	+	[[Category: Pcc 6301]]
	[[Category: Franceschini, S]]		[[Category: Franceschini, S]]
	[[Category: Ilari, A]]		[[Category: Ilari, A]]

OCA at 17:00, 19 January 2015

OCA — Mon, 19 Jan 2015 17:00:07 GMT

←Older revision		Revision as of 17:00, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Synechococcus elongatus]]		[[Category: Synechococcus elongatus]]
-	[[Category: Franceschini, S.]]	+	[[Category: Franceschini, S]]
-	[[Category: Ilari, A.]]	+	[[Category: Ilari, A]]
	[[Category: Dna-binding protein]]		[[Category: Dna-binding protein]]
	[[Category: Dp]]		[[Category: Dp]]

OCA at 01:38, 1 October 2014

OCA — Wed, 01 Oct 2014 01:38:33 GMT

←Older revision		Revision as of 01:38, 1 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2vxx.~~png\|left~~\|200px]]	+	==X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS==
		+	<StructureSection load='2vxx' size='340' side='right' caption='[[2vxx]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VXX FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vxx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vxx RCSB], [http://www.ebi.ac.uk/pdbsum/2vxx PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/2vxx_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The cyanobacterium Thermosynechococcus elongatus is one the few bacteria to possess two Dps proteins, DpsA-Te and Dps-Te. The present characterization of DpsA-Te reveals unusual structural and functional features that differentiate it from Dps-Te and the other known Dps proteins. Notably, two Zn(II) are bound at the ferroxidase center, owing to the unique substitution of a metal ligand at the A-site (His78 in place of the canonical aspartate) and to the presence of a histidine (His164) in place of a hydrophobic residue at a metal-coordinating distance in the B-site. Only the latter Zn(II) is displaced by incoming iron, such that Zn(II)-Fe(III) complexes are formed upon oxidation, as indicated by absorbance and atomic emission spectroscopy data. In contrast to the typical behavior of Dps proteins, where Fe(II) oxidation by H(2)O(2) is about 100-fold faster than by O(2), in DpsA-Te the ferroxidation efficiency of O(2) is very high and resembles that of H(2)O(2). Oxygraphic experiments show that two Fe(II) are required to reduce O(2), and that H(2)O(2) is not released into solution at the end of the reaction. On this basis, a reaction mechanism is proposed that also takes into account the formation of Zn(II)-Fe(III) complexes. The physiological significance of the DpsA-Te behavior is discussed in the framework of a possible localization of the protein at the thylakoid membranes, where photosynthesis takes place, with the consequent increased formation of reactive oxygen species.

-	~~{{STRUCTURE_2vxx\| PDB=2vxx \| SCENE= }}~~	+	Thermosynechococcus elongatus DpsA binds Zn(II) at a unique three histidine-containing ferroxidase center and utilizes O2 as iron oxidant with very high efficiency, unlike the typical Dps proteins.,Alaleona F, Franceschini S, Ceci P, Ilari A, Chiancone E FEBS J. 2010 Feb;277(4):903-17. Epub 2010 Jan 20. PMID:20088882<ref>PMID:20088882</ref>

-	~~===X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20088882}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2vxx]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Synechococcus_elongatus Synechococcus elongatus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:020088882<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Synechococcus elongatus]]		[[Category: Synechococcus elongatus]]
	[[Category: Franceschini, S.]]		[[Category: Franceschini, S.]]

OCA: Protected "2vxx" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 19:41:28 GMT

Protected "2vxx" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:41, 7 January 2013

OCA at 19:41, 7 January 2013

OCA — Mon, 07 Jan 2013 19:41:25 GMT

←Older revision		Revision as of 19:41, 7 January 2013
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-	{{Seed}}
	[[Image:2vxx.png\|left\|200px]]		[[Image:2vxx.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2vxx", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2vxx\| PDB=2vxx \| SCENE= }}		{{STRUCTURE_2vxx\| PDB=2vxx \| SCENE= }}

	===X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS===		===X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20088882}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20088882 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20088882}}		{{ABSTRACT_PUBMED_20088882}}

	==About this Structure==		==About this Structure==
-	~~2VXX~~ is a 4 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA].	+	[[2vxx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20088882~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020088882</ref><references group="xtra"/>
	[[Category: Synechococcus elongatus]]		[[Category: Synechococcus elongatus]]
	[[Category: Franceschini, S.]]		[[Category: Franceschini, S.]]
Line 33:		Line 21:
	[[Category: Oxidation]]		[[Category: Oxidation]]
	[[Category: Stress response protein]]		[[Category: Stress response protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:31:22 2010''

OCA at 06:31, 24 March 2010

OCA — Wed, 24 Mar 2010 06:31:22 GMT

←Older revision		Revision as of 06:31, 24 March 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:2vxx.~~jpg~~\|left\|200px]]	+	[[Image:2vxx.png\|left\|200px]]

	<!--		<!--
Line 12:		Line 12:
	===X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS===		===X-RAY STRUCTURE OF DPSA FROM THERMOSYNECHOCOCCUS ELONGATUS===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20088882}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20088882 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20088882}}

	==About this Structure==		==About this Structure==
-	2VXX is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA].	+	2VXX is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXX OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20088882</ref><references group="xtra"/>
	[[Category: Synechococcus elongatus]]		[[Category: Synechococcus elongatus]]
	[[Category: Franceschini, S.]]		[[Category: Franceschini, S.]]
Line 25:		Line 34:
	[[Category: Stress response protein]]		[[Category: Stress response protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Nov 18 19~~:48:~~47 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:31:22 2010''