2vy0 - Revision history

OCA at 15:37, 13 December 2023

OCA — Wed, 13 Dec 2023 15:37:12 GMT

←Older revision		Revision as of 15:37, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2vy0' size='340' side='right'caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>		<StructureSection load='2vy0' size='340' side='right'caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43587 Atcc 43587~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.16Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [https://pdbe.org/2vy0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [https://pdbe.org/2vy0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O73951_9EURY O73951_9EURY]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43587]]
-	[[Category: Glucan endo-1,3-beta-D-glucosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Fiorillo, A~~]]	+	[[Category: Pyrococcus furiosus]]
-	[[Category: ~~Ilari,~~ A]]	+	[[Category: Fiorillo A]]
-	[[Category: ~~Endoglucanase]]~~	+	[[Category: Ilari A]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Laminarin]]~~	+
-	~~[[Category: Thermostable protein~~]]	+

OCA at 11:48, 30 March 2022

OCA — Wed, 30 Mar 2022 11:48:50 GMT

←Older revision		Revision as of 11:48, 30 March 2022
Line 3:		Line 3:
	<StructureSection load='2vy0' size='340' side='right'caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>		<StructureSection load='2vy0' size='340' side='right'caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [~~http~~://pdbe.org/2vy0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [https://pdbe.org/2vy0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:41, 25 June 2020

OCA — Thu, 25 Jun 2020 08:41:03 GMT

←Older revision		Revision as of 08:41, 25 June 2020
Line 1:		Line 1:

	==The X-ray structure of endo-beta-1,3-glucanase from Pyrococcus furiosus==		==The X-ray structure of endo-beta-1,3-glucanase from Pyrococcus furiosus==
-	<StructureSection load='2vy0' size='340' side='right' caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>	+	<StructureSection load='2vy0' size='340' side='right'caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://pdbe.org/2vy0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://pdbe.org/2vy0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Glucanase\|Glucanase]]	+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 36:
	[[Category: Atcc 43587]]		[[Category: Atcc 43587]]
	[[Category: Glucan endo-1,3-beta-D-glucosidase]]		[[Category: Glucan endo-1,3-beta-D-glucosidase]]
		+	[[Category: Large Structures]]
	[[Category: Fiorillo, A]]		[[Category: Fiorillo, A]]
	[[Category: Ilari, A]]		[[Category: Ilari, A]]

OCA at 21:27, 19 September 2018

OCA — Wed, 19 Sep 2018 21:27:22 GMT

←Older revision		Revision as of 21:27, 19 September 2018
Line 1:		Line 1:

-	==~~THE~~ X-~~RAY STRUCTURE OF ENDO~~-~~BETA~~-1,3-~~GLUCANASE FROM PYROCOCCUS FURIOSUS~~==	+	==The X-ray structure of endo-beta-1,3-glucanase from Pyrococcus furiosus==
	<StructureSection load='2vy0' size='340' side='right' caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>		<StructureSection load='2vy0' size='340' side='right' caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vy0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vy0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:57, 11 August 2016

OCA — Thu, 11 Aug 2016 14:57:58 GMT

←Older revision		Revision as of 14:57, 11 August 2016
Line 1:		Line 1:
		+
	==THE X-RAY STRUCTURE OF ENDO-BETA-1,3-GLUCANASE FROM PYROCOCCUS FURIOSUS==		==THE X-RAY STRUCTURE OF ENDO-BETA-1,3-GLUCANASE FROM PYROCOCCUS FURIOSUS==
	<StructureSection load='2vy0' size='340' side='right' caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>		<StructureSection load='2vy0' size='340' side='right' caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_furiosus Pyrococcus furiosus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://pdbe.org/2vy0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2vy0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vy0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2vy0" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 43587]]
	[[Category: Glucan endo-1,3-beta-D-glucosidase]]		[[Category: Glucan endo-1,3-beta-D-glucosidase]]
-	[[Category: Pyrococcus furiosus]]
	[[Category: Fiorillo, A]]		[[Category: Fiorillo, A]]
	[[Category: Ilari, A]]		[[Category: Ilari, A]]

OCA at 14:34, 19 January 2015

OCA — Mon, 19 Jan 2015 14:34:36 GMT

←Older revision		Revision as of 14:34, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	[[Category: Glucan endo-1,3-beta-D-glucosidase]]		[[Category: Glucan endo-1,3-beta-D-glucosidase]]
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
-	[[Category: Fiorillo, A.]]	+	[[Category: Fiorillo, A]]
-	[[Category: Ilari, A.]]	+	[[Category: Ilari, A]]
	[[Category: Endoglucanase]]		[[Category: Endoglucanase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Laminarin]]		[[Category: Laminarin]]
	[[Category: Thermostable protein]]		[[Category: Thermostable protein]]

OCA at 07:12, 29 September 2014

OCA — Mon, 29 Sep 2014 07:12:43 GMT

←Older revision		Revision as of 07:12, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2vy0.~~png\|left~~\|200px]]	+	==THE X-RAY STRUCTURE OF ENDO-BETA-1,3-GLUCANASE FROM PYROCOCCUS FURIOSUS==
		+	<StructureSection load='2vy0' size='340' side='right' caption='[[2vy0]], [[Resolution\|resolution]] 2.16Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VY0 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vy0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vy0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vy0 RCSB], [http://www.ebi.ac.uk/pdbsum/2vy0 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/2vy0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacterial and archaeal endo-beta-1,3-glucanases that belong to glycoside hydrolase family 16 share a beta-jelly-roll fold, but differ significantly in sequence and in substrate specificity. The crystal structure of the laminarinase (EC 3.2.1.39) from the hyperthermophilic archaeon Pyrococcus furiosus (pfLamA) has been determined at 2.1 A resolution by molecular replacement. The pfLamA structure reveals a kink of six residues (72-77) at the entrance of the catalytic cleft. This peptide is absent in the endoglucanases from alkaliphilic Nocardiopsis sp. strain F96 and Bacillus macerans, two proteins displaying an overall fold similar to that of pfLamA, but with different substrate specificity. A deletion mutant of pfLamA, lacking residues 72-75, hydrolyses the mixed-linkage beta-1,3-1,4-glucan lichenan 10 times more efficiently than the wild-type protein, indicating the importance of the kink in substrate preference.

-	~~{{STRUCTURE_2vy0\| PDB=2vy0 \| SCENE= }}~~	+	Crystal structure of a family 16 endoglucanase from the hyperthermophile Pyrococcus furiosus--structural basis of substrate recognition.,Ilari A, Fiorillo A, Angelaccio S, Florio R, Chiaraluce R, van der Oost J, Consalvi V FEBS J. 2009 Feb;276(4):1048-58. Epub 2008 Jan 16. PMID:19154353<ref>PMID:19154353</ref>

-	~~===THE X-RAY STRUCTURE OF ENDO-BETA-1~~,~~3-GLUCANASE FROM PYROCOCCUS FURIOSUS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19154353}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2vy0]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA].~~	+

	==See Also==		==See Also==
	*[[Glucanase\|Glucanase]]		*[[Glucanase\|Glucanase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019154353<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Glucan endo-1,3-beta-D-glucosidase]]		[[Category: Glucan endo-1,3-beta-D-glucosidase]]
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]

OCA at 20:32, 20 October 2012

OCA — Sat, 20 Oct 2012 20:32:35 GMT

←Older revision		Revision as of 20:32, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2vy0]] is a 2 chain structure ~~of [[Glucanase]]~~ with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA].	+	[[2vy0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA].

	==See Also==		==See Also==

OCA: Protected "2vy0" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 10:50:54 GMT

Protected "2vy0" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:50, 27 July 2012

OCA at 10:50, 27 July 2012

OCA — Fri, 27 Jul 2012 10:50:53 GMT

←Older revision		Revision as of 10:50, 27 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2vy0.png\|left\|200px]]
-	[[Image:2vy0.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2vy0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2vy0\| PDB=2vy0 \| SCENE= }}		{{STRUCTURE_2vy0\| PDB=2vy0 \| SCENE= }}

	===THE X-RAY STRUCTURE OF ENDO-BETA-1,3-GLUCANASE FROM PYROCOCCUS FURIOSUS===		===THE X-RAY STRUCTURE OF ENDO-BETA-1,3-GLUCANASE FROM PYROCOCCUS FURIOSUS===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19154353}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19154353 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19154353}}		{{ABSTRACT_PUBMED_19154353}}

	==About this Structure==		==About this Structure==
-	~~2VY0~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA].	+	[[2vy0]] is a 2 chain structure of [[Glucanase]] with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VY0 OCA].
		+
		+	==See Also==
		+	*[[Glucanase\|Glucanase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19154353~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019154353</ref><references group="xtra"/>
	[[Category: Glucan endo-1,3-beta-D-glucosidase]]		[[Category: Glucan endo-1,3-beta-D-glucosidase]]
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
Line 32:		Line 23:
	[[Category: Laminarin]]		[[Category: Laminarin]]
	[[Category: Thermostable protein]]		[[Category: Thermostable protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:10:14 2009''