2w07 - Revision history

OCA at 15:39, 13 December 2023

OCA — Wed, 13 Dec 2023 15:39:06 GMT

←Older revision		Revision as of 15:39, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2w07' size='340' side='right'caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2w07' size='340' side='right'caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecout Ecout~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W07 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_UTI89 Escherichia coli UTI89]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [https://pdbe.org/2w07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [https://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [https://pdbe.org/2w07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [https://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q1R2W9_ECOUT Q1R2W9_ECOUT]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecout~~]]	+	[[Category: Escherichia coli UTI89]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ashcroft~~, A E~~]]	+	[[Category: Ashcroft AE]]
-	[[Category: Costakes, G]]	+	[[Category: Costakes G]]
-	[[Category: Daviter, T]]	+	[[Category: Daviter T]]
-	[[Category: Hultgren, S]]	+	[[Category: Hultgren S]]
-	[[Category: Paci, E]]	+	[[Category: Paci E]]
-	[[Category: Radford~~, S E~~]]	+	[[Category: Radford SE]]
-	[[Category: Remaut, H]]	+	[[Category: Remaut H]]
-	[[Category: Rose~~, R J~~]]	+	[[Category: Rose RJ]]
-	[[Category: Verger, D]]	+	[[Category: Verger D]]
-	[[Category: Waksman, G]]	+	[[Category: Waksman G]]
-	~~[[Category: Cell adhesion]]~~	+
-	~~[[Category: Cell projection]]~~	+
-	~~[[Category: Chaperone]]~~	+
-	~~[[Category: Donor strand complementation]]~~	+
-	~~[[Category: Donor-strand exchange]]~~	+
-	~~[[Category: Fimbrium]]~~	+
-	~~[[Category: Groove]]~~	+
-	~~[[Category: Immunoglobulin domain]]~~	+
-	~~[[Category: N-terminal extension]]~~	+
-	~~[[Category: Nte]]~~	+
-	~~[[Category: Order of assembly]]~~	+
-	~~[[Category: P5 pocket]]~~	+
-	~~[[Category: Papd]]~~	+
-	~~[[Category: Papf]]~~	+
-	~~[[Category: Periplasm]]~~	+
-	~~[[Category: Pili]]~~	+
-	~~[[Category: Pilin]]~~	+
-	~~[[Category: Pilus biogenesis]]~~	+
-	~~[[Category: Secreted]]~~	+
-	~~[[Category: Subunit~~]]	+

OCA at 11:49, 30 March 2022

OCA — Wed, 30 Mar 2022 11:49:54 GMT

←Older revision		Revision as of 11:49, 30 March 2022
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	<StructureSection load='2w07' size='340' side='right'caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2w07' size='340' side='right'caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2W07 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [~~http~~://pdbe.org/2w07 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [https://pdbe.org/2w07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [https://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:44, 25 June 2020

OCA — Thu, 25 Jun 2020 08:44:36 GMT

←Older revision		Revision as of 08:44, 25 June 2020
Line 1:		Line 1:

	==Structural determinants of polymerization reactivity of the P pilus adaptor subunit PapF==		==Structural determinants of polymerization reactivity of the P pilus adaptor subunit PapF==
-	<StructureSection load='2w07' size='340' side='right' caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='2w07' size='340' side='right'caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2W07 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://pdbe.org/2w07 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://pdbe.org/2w07 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 28:

	==See Also==		==See Also==
-	*[[Pilin\|Pilin]]	+	*[[Pilin 3D structures\|Pilin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Ecout]]		[[Category: Ecout]]
		+	[[Category: Large Structures]]
	[[Category: Ashcroft, A E]]		[[Category: Ashcroft, A E]]
	[[Category: Costakes, G]]		[[Category: Costakes, G]]

OCA at 20:56, 19 September 2018

OCA — Wed, 19 Sep 2018 20:56:44 GMT

←Older revision		Revision as of 20:56, 19 September 2018
Line 1:		Line 1:
-	==~~STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE~~ P ~~PILUS ADAPTOR SUBUNIT PAPF~~==	+
		+	==Structural determinants of polymerization reactivity of the P pilus adaptor subunit PapF==
	<StructureSection load='2w07' size='340' side='right' caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2w07' size='340' side='right' caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://pdbe.org/2w07 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://pdbe.org/2w07 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w07 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w0/2w07_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w0/2w07_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 57:		Line 58:
	[[Category: Papd]]		[[Category: Papd]]
	[[Category: Papf]]		[[Category: Papf]]
		+	[[Category: Periplasm]]
	[[Category: Pili]]		[[Category: Pili]]
	[[Category: Pilin]]		[[Category: Pilin]]

OCA at 16:56, 7 February 2016

OCA — Sun, 07 Feb 2016 16:56:18 GMT

←Older revision		Revision as of 16:56, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2w07' size='340' side='right' caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2w07' size='340' side='right' caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecout Ecout]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://pdbe.org/2w07 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w07 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2w07" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Ecout]]
	[[Category: Ashcroft, A E]]		[[Category: Ashcroft, A E]]
	[[Category: Costakes, G]]		[[Category: Costakes, G]]

OCA at 17:55, 19 January 2015

OCA — Mon, 19 Jan 2015 17:55:27 GMT

←Older revision		Revision as of 17:55, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Ashcroft, A E.]]	+	[[Category: Ashcroft, A E]]
-	[[Category: Costakes, G.]]	+	[[Category: Costakes, G]]
-	[[Category: Daviter, T.]]	+	[[Category: Daviter, T]]
-	[[Category: Hultgren, S.]]	+	[[Category: Hultgren, S]]
-	[[Category: Paci, E.]]	+	[[Category: Paci, E]]
-	[[Category: Radford, S E.]]	+	[[Category: Radford, S E]]
-	[[Category: Remaut, H.]]	+	[[Category: Remaut, H]]
-	[[Category: Rose, R J.]]	+	[[Category: Rose, R J]]
-	[[Category: Verger, D.]]	+	[[Category: Verger, D]]
-	[[Category: Waksman, G.]]	+	[[Category: Waksman, G]]
	[[Category: Cell adhesion]]		[[Category: Cell adhesion]]
	[[Category: Cell projection]]		[[Category: Cell projection]]

OCA at 02:02, 1 October 2014

OCA — Wed, 01 Oct 2014 02:02:46 GMT

←Older revision		Revision as of 02:02, 1 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2w07\| PDB=2w07 \| SCENE= }}~~	+	==STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE P PILUS ADAPTOR SUBUNIT PAPF==
-	===STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE P PILUS ADAPTOR SUBUNIT PAPF===	+	<StructureSection load='2w07' size='340' side='right' caption='[[2w07]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{ABSTRACT_PUBMED_19000824}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W07 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w07 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2w07 RCSB], [http://www.ebi.ac.uk/pdbsum/2w07 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w0/2w07_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	P pili are important adhesive fibers involved in kidney infection by uropathogenic Escherichia coli. Pilus subunits are characterized by a large groove resulting from lack of a beta strand. Polymerization of pilus subunits occurs via the donor-strand exchange (DSE) mechanism initiated when the N terminus of an incoming subunit interacts with the P5 region/pocket of the previously assembled subunit groove. Here, we solve the structure of the PapD:PapF complex in order to understand why PapF undergoes slow DSE. The structure reveals that the PapF P5 pocket is partially obstructed. MD simulations show this region of PapF is flexible compared with its equivalent in PapH, a subunit that also has an obstructed P5 pocket and is unable to undergo DSE. Using electrospray-ionization mass spectrometry, we show that mutations in the P5 region result in increased DSE rates. Thus, partial obstruction of the P5 pocket serves as a modulating mechanism of DSE.

-	~~==About this~~ Structure==	+	Structural determinants of polymerization reactivity of the P pilus adaptor subunit PapF.,Verger D, Rose RJ, Paci E, Costakes G, Daviter T, Hultgren S, Remaut H, Ashcroft AE, Radford SE, Waksman G Structure. 2008 Nov 12;16(11):1724-31. PMID:19000824<ref>PMID:19000824</ref>
-	~~[[2w07]] is a 2 chain structure with sequence from [http~~:~~//en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2W07 OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Pilin\|Pilin]]		*[[Pilin\|Pilin]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Ashcroft, A E.]]		[[Category: Ashcroft, A E.]]

OCA at 10:59, 11 March 2013

OCA — Mon, 11 Mar 2013 10:59:56 GMT

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	===STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE P PILUS ADAPTOR SUBUNIT PAPF===		===STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE P PILUS ADAPTOR SUBUNIT PAPF===
-
	{{ABSTRACT_PUBMED_19000824}}		{{ABSTRACT_PUBMED_19000824}}

OCA: Protected "2w07" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 22:58:59 GMT

Protected "2w07" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:58, 7 January 2013

OCA at 22:58, 7 January 2013

OCA — Mon, 07 Jan 2013 22:58:56 GMT

←Older revision		Revision as of 22:58, 7 January 2013
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	[[Image:2w07.png\|left\|200px]]		[[Image:2w07.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2w07\| PDB=2w07 \| SCENE= }}		{{STRUCTURE_2w07\| PDB=2w07 \| SCENE= }}

	===STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE P PILUS ADAPTOR SUBUNIT PAPF===		===STRUCTURAL DETERMINANTS OF POLYMERIZATION REACTIVITY OF THE P PILUS ADAPTOR SUBUNIT PAPF===

		+	{{ABSTRACT_PUBMED_19000824}}

	==About this Structure==		==About this Structure==
-	~~2W07~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA].	+	[[2w07]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W07 OCA].
		+
		+	==See Also==
		+	*[[Pilin\|Pilin]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Ashcroft, A E.]]		[[Category: Ashcroft, A E.]]
Line 40:		Line 37:
	[[Category: Papd]]		[[Category: Papd]]
	[[Category: Papf]]		[[Category: Papf]]
-	[[Category: Periplasm]]
	[[Category: Pili]]		[[Category: Pili]]
	[[Category: Pilin]]		[[Category: Pilin]]
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	[[Category: Secreted]]		[[Category: Secreted]]
	[[Category: Subunit]]		[[Category: Subunit]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 11:06:11 2009''