2wbn - Revision history

OCA at 11:02, 6 April 2022

OCA — Wed, 06 Apr 2022 11:02:55 GMT

←Older revision		Revision as of 11:02, 6 April 2022
Line 3:		Line 3:
	<StructureSection load='2wbn' size='340' side='right'caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2wbn' size='340' side='right'caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpspp Bpspp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2WBN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpspp Bpspp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WBN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wc9\|2wc9]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [~~http~~://pdbe.org/2wbn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2wbn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2wbn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [https://pdbe.org/2wbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [https://www.ebi.ac.uk/pdbsum/2wbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wbn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:30, 1 July 2020

OCA — Wed, 01 Jul 2020 08:30:03 GMT

←Older revision		Revision as of 08:30, 1 July 2020
Line 1:		Line 1:

	==Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1==		==Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1==
-	<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='2wbn' size='340' side='right'caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpspp Bpspp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2WBN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpspp Bpspp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2WBN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://pdbe.org/2wbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wbn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://pdbe.org/2wbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wbn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bpspp]]		[[Category: Bpspp]]
		+	[[Category: Large Structures]]
	[[Category: Alonso, J C]]		[[Category: Alonso, J C]]
	[[Category: Antson, A A]]		[[Category: Antson, A A]]

OCA at 09:46, 26 September 2018

OCA — Wed, 26 Sep 2018 09:46:54 GMT

←Older revision		Revision as of 09:46, 26 September 2018
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF THE G2P~~ (~~LARGE TERMINASE~~) ~~NUCLEASE DOMAIN FROM THE BACTERIOPHAGE~~ SPP1==	+
		+	==Crystal structure of the g2p (large terminase) nuclease domain from the bacteriophage SPP1==
	<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://pdbe.org/2wbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://pdbe.org/2wbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wbn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wb/2wbn_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wb/2wbn_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 2wbn" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2wbn" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Terminase\|Terminase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 19:37, 9 February 2016

OCA — Tue, 09 Feb 2016 19:37:56 GMT

←Older revision		Revision as of 19:37, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_phage_spp1 Bacillus phage spp1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WBN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpspp Bpspp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WBN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://pdbe.org/2wbn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wbn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2wbn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus phage spp1~~]]	+	[[Category: Bpspp]]
	[[Category: Alonso, J C]]		[[Category: Alonso, J C]]
	[[Category: Antson, A A]]		[[Category: Antson, A A]]

OCA at 18:41, 19 January 2015

OCA — Mon, 19 Jan 2015 18:41:08 GMT

←Older revision		Revision as of 18:41, 19 January 2015
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus phage spp1]]		[[Category: Bacillus phage spp1]]
-	[[Category: Alonso, J C.]]	+	[[Category: Alonso, J C]]
-	[[Category: Antson, A A.]]	+	[[Category: Antson, A A]]
-	[[Category: Chechik, M.]]	+	[[Category: Chechik, M]]
-	[[Category: Foster, A W.]]	+	[[Category: Foster, A W]]
-	[[Category: Kovalevskiy, O V.]]	+	[[Category: Kovalevskiy, O V]]
-	[[Category: Shevtsov, M B.]]	+	[[Category: Shevtsov, M B]]
-	[[Category: Smits, C.]]	+	[[Category: Smits, C]]
	[[Category: Dna packaging]]		[[Category: Dna packaging]]
	[[Category: Large terminase]]		[[Category: Large terminase]]
	[[Category: Nuclease]]		[[Category: Nuclease]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 06:56, 10 October 2014

OCA — Fri, 10 Oct 2014 06:56:02 GMT

←Older revision		Revision as of 06:56, 10 October 2014
Line 2:		Line 2:
	<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. <br>	+	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WBN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>
-	<tr~~><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class~~='~~plainlinks~~'~~>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum]</span></td></tr>
-	~~<tr~~><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum]</span></td></tr>	+	</table>
-	<table>	+
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 23:
	Structural basis for the nuclease activity of a bacteriophage large terminase.,Smits C, Chechik M, Kovalevskiy OV, Shevtsov MB, Foster AW, Alonso JC, Antson AA EMBO Rep. 2009 Jun;10(6):592-8. Epub 2009 May 15. PMID:19444313<ref>PMID:19444313</ref>		Structural basis for the nuclease activity of a bacteriophage large terminase.,Smits C, Chechik M, Kovalevskiy OV, Shevtsov MB, Foster AW, Alonso JC, Antson AA EMBO Rep. 2009 Jun;10(6):592-8. Epub 2009 May 15. PMID:19444313<ref>PMID:19444313</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==

OCA at 08:43, 7 May 2014

OCA — Wed, 07 May 2014 08:43:18 GMT

←Older revision		Revision as of 08:43, 7 May 2014
Line 1:		Line 1:
-	[[~~Image:~~2wbn.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF THE G2P (LARGE TERMINASE) NUCLEASE DOMAIN FROM THE BACTERIOPHAGE SPP1==
		+	<StructureSection load='2wbn' size='340' side='right' caption='[[2wbn]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wc9\|2wc9]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wbn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wbn RCSB], [http://www.ebi.ac.uk/pdbsum/2wbn PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wb/2wbn_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The DNA-packaging motor in tailed bacteriophages requires nuclease activity to ensure that the genome is packaged correctly. This nuclease activity is tightly regulated as the enzyme is inactive for the duration of DNA translocation. Here, we report the X-ray structure of the large terminase nuclease domain from bacteriophage SPP1. Similarity with the RNase H family endonucleases allowed interactions with the DNA to be predicted. A structure-based alignment with the distantly related T4 gp17 terminase shows the conservation of an extended beta-sheet and an auxiliary beta-hairpin that are not found in other RNase H family proteins. The model with DNA suggests that the beta-hairpin partly blocks the active site, and in vivo activity assays show that the nuclease domain is not functional in the absence of the ATPase domain. Here, we propose that the nuclease activity is regulated by movement of the beta-hairpin, altering active site access and the orientation of catalytically essential residues.

-	~~<!--~~	+	Structural basis for the nuclease activity of a bacteriophage large terminase.,Smits C, Chechik M, Kovalevskiy OV, Shevtsov MB, Foster AW, Alonso JC, Antson AA EMBO Rep. 2009 Jun;10(6):592-8. Epub 2009 May 15. PMID:19444313<ref>PMID:19444313</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_2wbn"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_2wbn\| PDB=2wbn \| SCENE= }}~~	+

-	~~===CRYSTAL STRUCTURE OF THE G2P (LARGE TERMINASE) NUCLEASE DOMAIN FROM THE BACTERIOPHAGE SPP1===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph~~, ~~{{ABSTRACT_PUBMED_19444313}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 19444313 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_19444313}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2wbn]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019444313<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bacillus phage spp1]]		[[Category: Bacillus phage spp1]]
	[[Category: Alonso, J C.]]		[[Category: Alonso, J C.]]

OCA: Protected "2wbn" [edit=sysop:move=sysop]

OCA — Sun, 30 Oct 2011 08:18:13 GMT

Protected "2wbn" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:18, 30 October 2011

OCA at 08:18, 30 October 2011

OCA — Sun, 30 Oct 2011 08:18:11 GMT

←Older revision		Revision as of 08:18, 30 October 2011
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-	{{Seed}}
	[[Image:2wbn.png\|left\|200px]]		[[Image:2wbn.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2WBN~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA].	+	[[2wbn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19444313~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019444313</ref><references group="xtra"/>
	[[Category: Bacillus phage spp1]]		[[Category: Bacillus phage spp1]]
	[[Category: Alonso, J C.]]		[[Category: Alonso, J C.]]
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	[[Category: Nuclease]]		[[Category: Nuclease]]
	[[Category: Viral protein]]		[[Category: Viral protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 27 14:38:22 2009''

OCA at 11:38, 27 May 2009

OCA — Wed, 27 May 2009 11:38:22 GMT

←Older revision		Revision as of 11:38, 27 May 2009
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	{{Seed}}		{{Seed}}
-	[[Image:2wbn.~~jpg~~\|left\|200px]]	+	[[Image:2wbn.png\|left\|200px]]

	<!--		<!--
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	===CRYSTAL STRUCTURE OF THE G2P (LARGE TERMINASE) NUCLEASE DOMAIN FROM THE BACTERIOPHAGE SPP1===		===CRYSTAL STRUCTURE OF THE G2P (LARGE TERMINASE) NUCLEASE DOMAIN FROM THE BACTERIOPHAGE SPP1===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19444313}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19444313 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19444313}}

	==About this Structure==		==About this Structure==
	2WBN is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA].		2WBN is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_spp1 Bacillus phage spp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WBN OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19444313</ref><references group="xtra"/>
	[[Category: Bacillus phage spp1]]		[[Category: Bacillus phage spp1]]
	[[Category: Alonso, J C.]]		[[Category: Alonso, J C.]]
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	[[Category: Viral protein]]		[[Category: Viral protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Mar 25 12~~:13:16 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 27 14:38:22 2009''