2wdk - Revision history

OCA: Redirecting to 4v5d

OCA — Wed, 10 Dec 2014 15:14:59 GMT

Redirecting to 4v5d

←Older revision		Revision as of 15:14, 10 December 2014
Line 1:		Line 1:
-	==STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.==	+	#REDIRECT [[4v5d]] This PDB entry is obsolete and replaced by 4v5d
-	~~<StructureSection load='2wdk' size='340' side='right' caption='~~[[~~2wdk]], [[Resolution\|resolution]] 3.50Å' scene=''>~~	+
-	~~== Structural highlights ==~~	+
-	~~<table><tr><td colspan='2'>[[2wdk~~]] is ~~a 25 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]~~ and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDK FirstGlance]. <br>	+
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=8AN:3-AMINO-3-DEOXYADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>8AN</scene>, <scene name='pdbligand=PHA:PHENYLALANINAL'>PHA</scene></td></tr>	+
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wdl\|2wdl]], [[2wdm\|2wdm]], [[2wdn\|2wdn]], [[1hr0\|1hr0]], [[2v48\|2v48]], [[1ibk\|1ibk]], [[2b64\|2b64]], [[1xmq\|1xmq]], [[1ibl\|1ibl]], [[2b9m\|2b9m]], [[2uuc\|2uuc]], [[1pn8\|1pn8]], [[1xnr\|1xnr]], [[1dv4\|1dv4]], [[1hnz\|1hnz]], [[1rss\|1rss]], [[2j02\|2j02]], [[1j5e\|1j5e]], [[1jgq\|1jgq]], [[1i94\|1i94]], [[2b9o\|2b9o]], [[1hnx\|1hnx]], [[2j00\|2j00]], [[1i96\|1i96]], [[2uu9\|2uu9]], [[1pn7\|1pn7]], [[2uub\|2uub]], [[1vov\|1vov]], [[1eg0\|1eg0]], [[1ibm\|1ibm]], [[1emi\|1emi]], [[2uxb\|2uxb]], [[2vqe\|2vqe]], [[1g1x\|1g1x]], [[1i95\|1i95]], [[2uua\|2uua]], [[2v46\|2v46]], [[1pnx\|1pnx]], [[1xnq\|1xnq]], [[1qd7\|1qd7]], [[1gix\|1gix]], [[2vqf\|2vqf]], [[1jgo\|1jgo]], [[1jgp\|1jgp]], [[1n32\|1n32]], [[2jl5\|2jl5]], [[2f4v\|2f4v]], [[1n34\|1n34]], [[1n33\|1n33]], [[1twt\|1twt]], [[1pns\|1pns]], [[2jl7\|2jl7]], [[1qzc\|1qzc]], [[2uxd\|2uxd]], [[1fka\|1fka]], [[1yl4\|1yl4]], [[2uxc\|2uxc]], [[1n36\|1n36]], [[1fjg\|1fjg]], [[1xmo\|1xmo]], [[1i97\|1i97]], [[1hnw\|1hnw]], [[1l1u\|1l1u]], [[2wdg\|2wdg]], [[2wdh\|2wdh]], [[2wdi\|2wdi]], [[2wdj\|2wdj]]</td></tr>	+
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wdk RCSB], [http://www.ebi.ac.uk/pdbsum/2wdk PDBsum]</span></td></tr>	+
-	~~<table>~~	+
-	~~== Evolutionary Conservation ==~~	+
-	~~[[Image:Consurf_key_small.gif\|200px\|right]]~~	+
-	~~Check<jmol>~~	+
-	~~<jmolCheckbox>~~	+
-	~~<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wdk_consurf.spt"</scriptWhenChecked>~~	+
-	~~<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>~~	+
-	~~<text>to colour the structure by Evolutionary Conservation</text>~~	+
-	~~</jmolCheckbox>~~	+
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].	+
-	~~<div style="clear:both"></div>~~	+
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Protein synthesis is catalyzed in the peptidyl transferase center (PTC), located in the large (50S) subunit of the ribosome. No high-resolution structure of the intact ribosome has contained a complete active site including both A- and P-site tRNAs. In addition, although past structures of the 50S subunit have found no ordered proteins at the PTC, biochemical evidence suggests that specific proteins are capable of interacting with the 3' ends of tRNA ligands. Here we present structures, at 3.6-A and 3.5-A resolution respectively, of the 70S ribosome in complex with A- and P-site tRNAs that mimic pre- and post-peptidyl-transfer states. These structures demonstrate that the PTC is very similar between the 50S subunit and the intact ribosome. They also reveal interactions between the ribosomal proteins L16 and L27 and the tRNA substrates, helping to elucidate the role of these proteins in peptidyl transfer.	+
-		+
-	Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.,Voorhees RM, Weixlbaumer A, Loakes D, Kelley AC, Ramakrishnan V Nat Struct Mol Biol. 2009 May;16(5):528-33. Epub 2009 Apr 12. PMID:19363482<ref>PMID:19363482</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-		+
-	~~==See Also==~~	+
-	*[[Ribosomal protein THX\|Ribosomal protein THX]]	+
-	*[[Ribosome 3D structures\|Ribosome 3D structures]]	+
-	~~== References ==~~	+
-	~~<references/>~~	+
-	~~__TOC__~~	+
-	~~</StructureSection>~~	+
-	~~[[Category: 70S Ribosomes]]~~	+
-	~~[[Category: Escherichia coli]]~~	+
-	~~[[Category: RCSB PDB Molecule of the Month]]~~	+
-	~~[[Category: Thermus thermophilus]]~~	+
-	~~[[Category: Kelley, A C.]]~~	+
-	~~[[Category: Loakes, D.]]~~	+
-	~~[[Category: Ramakrishnan, V.]]~~	+
-	~~[[Category: Voorhees, R M.]]~~	+
-	~~[[Category: Weixlbaumer, A.]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Mrna]]~~	+
-	~~[[Category: Ribonucleoprotein]]~~	+
-	~~[[Category: Ribosomal protein]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Rna-binding]]~~	+
-	~~[[Category: Rrna-binding]]~~	+
-	~~[[Category: Translation]]~~	+
-	~~[[Category: Trna]]~~	+
-	~~[[Category: Trna-binding]]~~	+
-	~~[[Category: Zinc-finger]]~~	+

OCA at 07:53, 29 September 2014

OCA — Mon, 29 Sep 2014 07:53:20 GMT

←Older revision		Revision as of 07:53, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2wdk.~~png~~\|~~left~~\|200px]]	+	==STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.==
		+	<StructureSection load='2wdk' size='340' side='right' caption='[[2wdk]], [[Resolution\|resolution]] 3.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2wdk]] is a 25 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WDK FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=8AN:3-AMINO-3-DEOXYADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>8AN</scene>, <scene name='pdbligand=PHA:PHENYLALANINAL'>PHA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wdl\|2wdl]], [[2wdm\|2wdm]], [[2wdn\|2wdn]], [[1hr0\|1hr0]], [[2v48\|2v48]], [[1ibk\|1ibk]], [[2b64\|2b64]], [[1xmq\|1xmq]], [[1ibl\|1ibl]], [[2b9m\|2b9m]], [[2uuc\|2uuc]], [[1pn8\|1pn8]], [[1xnr\|1xnr]], [[1dv4\|1dv4]], [[1hnz\|1hnz]], [[1rss\|1rss]], [[2j02\|2j02]], [[1j5e\|1j5e]], [[1jgq\|1jgq]], [[1i94\|1i94]], [[2b9o\|2b9o]], [[1hnx\|1hnx]], [[2j00\|2j00]], [[1i96\|1i96]], [[2uu9\|2uu9]], [[1pn7\|1pn7]], [[2uub\|2uub]], [[1vov\|1vov]], [[1eg0\|1eg0]], [[1ibm\|1ibm]], [[1emi\|1emi]], [[2uxb\|2uxb]], [[2vqe\|2vqe]], [[1g1x\|1g1x]], [[1i95\|1i95]], [[2uua\|2uua]], [[2v46\|2v46]], [[1pnx\|1pnx]], [[1xnq\|1xnq]], [[1qd7\|1qd7]], [[1gix\|1gix]], [[2vqf\|2vqf]], [[1jgo\|1jgo]], [[1jgp\|1jgp]], [[1n32\|1n32]], [[2jl5\|2jl5]], [[2f4v\|2f4v]], [[1n34\|1n34]], [[1n33\|1n33]], [[1twt\|1twt]], [[1pns\|1pns]], [[2jl7\|2jl7]], [[1qzc\|1qzc]], [[2uxd\|2uxd]], [[1fka\|1fka]], [[1yl4\|1yl4]], [[2uxc\|2uxc]], [[1n36\|1n36]], [[1fjg\|1fjg]], [[1xmo\|1xmo]], [[1i97\|1i97]], [[1hnw\|1hnw]], [[1l1u\|1l1u]], [[2wdg\|2wdg]], [[2wdh\|2wdh]], [[2wdi\|2wdi]], [[2wdj\|2wdj]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wdk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wdk RCSB], [http://www.ebi.ac.uk/pdbsum/2wdk PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wd/2wdk_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein synthesis is catalyzed in the peptidyl transferase center (PTC), located in the large (50S) subunit of the ribosome. No high-resolution structure of the intact ribosome has contained a complete active site including both A- and P-site tRNAs. In addition, although past structures of the 50S subunit have found no ordered proteins at the PTC, biochemical evidence suggests that specific proteins are capable of interacting with the 3' ends of tRNA ligands. Here we present structures, at 3.6-A and 3.5-A resolution respectively, of the 70S ribosome in complex with A- and P-site tRNAs that mimic pre- and post-peptidyl-transfer states. These structures demonstrate that the PTC is very similar between the 50S subunit and the intact ribosome. They also reveal interactions between the ribosomal proteins L16 and L27 and the tRNA substrates, helping to elucidate the role of these proteins in peptidyl transfer.

-	~~{{STRUCTURE_2wdk\| PDB=2wdk \| SCENE= }}~~	+	Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.,Voorhees RM, Weixlbaumer A, Loakes D, Kelley AC, Ramakrishnan V Nat Struct Mol Biol. 2009 May;16(5):528-33. Epub 2009 Apr 12. PMID:19363482<ref>PMID:19363482</ref>

-	~~===STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA~~, ~~PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19363482}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2wdk]] is~~ a 25 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the ~~Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx~~.~~doi~~.~~org/10~~.~~2210~~/~~rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].~~	+

	==See Also==		==See Also==
-	*[[Ribosomal protein S10\|Ribosomal protein S10]]
-	*[[Ribosomal protein S11\|Ribosomal protein S11]]
-	*[[Ribosomal protein S12\|Ribosomal protein S12]]
-	*[[Ribosomal protein S13\|Ribosomal protein S13]]
-	*[[Ribosomal protein S14\|Ribosomal protein S14]]
-	*[[Ribosomal protein S15\|Ribosomal protein S15]]
-	*[[Ribosomal protein S16\|Ribosomal protein S16]]
-	*[[Ribosomal protein S17\|Ribosomal protein S17]]
-	*[[Ribosomal protein S18\|Ribosomal protein S18]]
-	*[[Ribosomal protein S19\|Ribosomal protein S19]]
-	*[[Ribosomal protein S2\|Ribosomal protein S2]]
-	*[[Ribosomal protein S20\|Ribosomal protein S20]]
-	*[[Ribosomal protein S3\|Ribosomal protein S3]]
-	*[[Ribosomal protein S4\|Ribosomal protein S4]]
-	*[[Ribosomal protein S5\|Ribosomal protein S5]]
-	*[[Ribosomal protein S6\|Ribosomal protein S6]]
-	*[[Ribosomal protein S7\|Ribosomal protein S7]]
-	*[[Ribosomal protein S8\|Ribosomal protein S8]]
-	*[[Ribosomal protein S9\|Ribosomal protein S9]]
	*[[Ribosomal protein THX\|Ribosomal protein THX]]		*[[Ribosomal protein THX\|Ribosomal protein THX]]
-	*[[Ribosome\|Ribosome]]	+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019363482<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: 70S Ribosomes]]		[[Category: 70S Ribosomes]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]

OCA at 19:39, 20 October 2012

OCA — Sat, 20 Oct 2012 19:39:39 GMT

←Older revision		Revision as of 19:39, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2wdk]] is a 25 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]], [[Ribosomal protein S9]], [[Ribosomal protein THX]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].	+	[[2wdk]] is a 25 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].

	==See Also==		==See Also==

OCA at 08:05, 27 July 2012

OCA — Fri, 27 Jul 2012 08:05:43 GMT

←Older revision		Revision as of 08:05, 27 July 2012
Line 1:		Line 1:
	[[Image:2wdk.png\|left\|200px]]		[[Image:2wdk.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2wdk", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2wdk\| PDB=2wdk \| SCENE= }}		{{STRUCTURE_2wdk\| PDB=2wdk \| SCENE= }}

	===STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.===		===STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19363482}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19363482 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19363482}}		{{ABSTRACT_PUBMED_19363482}}

	==About this Structure==		==About this Structure==
-	[[2wdk]] is a 25 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S15]], [[Ribosomal protein S17]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein THX]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].	+	[[2wdk]] is a 25 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]], [[Ribosomal protein S9]], [[Ribosomal protein THX]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].

	==See Also==		==See Also==
-	*[[Ribosomal protein S10]]	+	*[[Ribosomal protein S10\|Ribosomal protein S10]]
-	*[[Ribosomal protein S11]]	+	*[[Ribosomal protein S11\|Ribosomal protein S11]]
-	*[[Ribosomal protein S12]]	+	*[[Ribosomal protein S12\|Ribosomal protein S12]]
-	*[[Ribosomal protein S13]]	+	*[[Ribosomal protein S13\|Ribosomal protein S13]]
-	*[[Ribosomal protein S15]]	+	*[[Ribosomal protein S14\|Ribosomal protein S14]]
-	*[[Ribosomal protein S17]]	+	*[[Ribosomal protein S15\|Ribosomal protein S15]]
-	*[[Ribosomal protein S2]]	+	*[[Ribosomal protein S16\|Ribosomal protein S16]]
-	*[[Ribosomal protein S20]]	+	*[[Ribosomal protein S17\|Ribosomal protein S17]]
-	*[[Ribosomal protein S3]]	+	*[[Ribosomal protein S18\|Ribosomal protein S18]]
-	*[[Ribosomal protein S4]]	+	*[[Ribosomal protein S19\|Ribosomal protein S19]]
-	*[[Ribosomal protein THX]]	+	*[[Ribosomal protein S2\|Ribosomal protein S2]]
-	*[[Ribosome]]	+	*[[Ribosomal protein S20\|Ribosomal protein S20]]
		+	*[[Ribosomal protein S3\|Ribosomal protein S3]]
		+	*[[Ribosomal protein S4\|Ribosomal protein S4]]
		+	*[[Ribosomal protein S5\|Ribosomal protein S5]]
		+	*[[Ribosomal protein S6\|Ribosomal protein S6]]
		+	*[[Ribosomal protein S7\|Ribosomal protein S7]]
		+	*[[Ribosomal protein S8\|Ribosomal protein S8]]
		+	*[[Ribosomal protein S9\|Ribosomal protein S9]]
		+	*[[Ribosomal protein THX\|Ribosomal protein THX]]
		+	*[[Ribosome\|Ribosome]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19363482~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019363482</ref><references group="xtra"/>
	[[Category: 70S Ribosomes]]		[[Category: 70S Ribosomes]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
Line 46:		Line 44:
	[[Category: Voorhees, R M.]]		[[Category: Voorhees, R M.]]
	[[Category: Weixlbaumer, A.]]		[[Category: Weixlbaumer, A.]]
-	[[Category: Coiled coil]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Mrna]]		[[Category: Mrna]]
Line 57:		Line 54:
	[[Category: Trna]]		[[Category: Trna]]
	[[Category: Trna-binding]]		[[Category: Trna-binding]]
-	[[Category: Zinc]]
	[[Category: Zinc-finger]]		[[Category: Zinc-finger]]

OCA: Protected "2wdk" [edit=sysop:move=sysop]

OCA — Mon, 27 Dec 2010 01:38:40 GMT

Protected "2wdk" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:38, 27 December 2010

OCA at 01:38, 27 December 2010

OCA — Mon, 27 Dec 2010 01:38:38 GMT

←Older revision		Revision as of 01:38, 27 December 2010
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2wdk.png\|left\|200px]]		[[Image:2wdk.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2WDK~~ is a 25 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].	+	[[2wdk]] is a 25 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S15]], [[Ribosomal protein S17]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein THX]] and [[Ribosome]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].
		+
		+	==See Also==
		+	*[[Ribosomal protein S10]]
		+	*[[Ribosomal protein S11]]
		+	*[[Ribosomal protein S12]]
		+	*[[Ribosomal protein S13]]
		+	*[[Ribosomal protein S15]]
		+	*[[Ribosomal protein S17]]
		+	*[[Ribosomal protein S2]]
		+	*[[Ribosomal protein S20]]
		+	*[[Ribosomal protein S3]]
		+	*[[Ribosomal protein S4]]
		+	*[[Ribosomal protein THX]]
		+	*[[Ribosome]]

	==Reference==		==Reference==
Line 46:		Line 59:
	[[Category: Zinc]]		[[Category: Zinc]]
	[[Category: Zinc-finger]]		[[Category: Zinc-finger]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 21 09:35:38 2010''

OCA at 07:35, 21 January 2010

OCA — Thu, 21 Jan 2010 07:35:43 GMT

←Older revision		Revision as of 07:35, 21 January 2010
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2WDK is a 25 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].	+	2WDK is a 25 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. The January 2010 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''70S Ribosomes'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2010_1 10.2210/rcsb_pdb/mom_2010_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:19363482</ref><references group="xtra"/>		<ref group="xtra">PMID:19363482</ref><references group="xtra"/>
		+	[[Category: 70S Ribosomes]]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
		+	[[Category: RCSB PDB Molecule of the Month]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Kelley, A C.]]		[[Category: Kelley, A C.]]
Line 45:		Line 47:
	[[Category: Zinc-finger]]		[[Category: Zinc-finger]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Apr 29 20~~:38:~~53 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 21 09:35:38 2010''

OCA at 17:38, 29 April 2009

OCA — Wed, 29 Apr 2009 17:38:54 GMT

←Older revision		Revision as of 17:38, 29 April 2009
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:2wdk.~~jpg~~\|left\|200px]]	+	[[Image:2wdk.png\|left\|200px]]

	<!--		<!--
Line 12:		Line 12:
	===STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.===		===STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19363482}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19363482 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19363482}}

	==About this Structure==		==About this Structure==
	2WDK is a 25 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].		2WDK is a 25 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WDK OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19363482</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
Line 36:		Line 45:
	[[Category: Zinc-finger]]		[[Category: Zinc-finger]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr ~~15 10~~:23:23 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 29 20:38:53 2009''

OCA: New page: {{Seed}} 200px