2wis - Revision history

OCA at 08:46, 15 November 2023

OCA — Wed, 15 Nov 2023 08:46:00 GMT

←Older revision		Revision as of 08:46, 15 November 2023
Line 3:		Line 3:
	<StructureSection load='2wis' size='340' side='right'caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='2wis' size='340' side='right'caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anthomedusae_sp.~~_dc~~-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WIS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anthomedusae_sp._DC-2005 Anthomedusae sp. DC-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WIS FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.35Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[2wiq\|2wiq]]~~</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [https://pdbe.org/2wis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [https://www.ebi.ac.uk/pdbsum/2wis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wis ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [https://pdbe.org/2wis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [https://www.ebi.ac.uk/pdbsum/2wis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wis ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q2TCH5_9CNID Q2TCH5_9CNID]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anthomedusae sp. dc-2005]]	+	[[Category: Anthomedusae sp. DC-2005]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Blanchoin, L]]	+	[[Category: Blanchoin L]]
-	[[Category: Bourgeois, D]]	+	[[Category: Bourgeois D]]
-	[[Category: Carpentier, P]]	+	[[Category: Carpentier P]]
-	[[Category: Violot, S]]	+	[[Category: Violot S]]
-	~~[[Category: Cali]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Reactive oxygen species]]~~	+
-	~~[[Category: Ro~~]]	+

OCA at 16:43, 3 November 2021

OCA — Wed, 03 Nov 2021 16:43:42 GMT

←Older revision		Revision as of 16:43, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='2wis' size='340' side='right'caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='2wis' size='340' side='right'caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2WIS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WIS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wiq\|2wiq]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [~~http~~://pdbe.org/2wis PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2wis PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2wis ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [https://pdbe.org/2wis PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [https://www.ebi.ac.uk/pdbsum/2wis PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wis ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:16, 23 October 2019

OCA — Wed, 23 Oct 2019 07:16:00 GMT

←Older revision		Revision as of 07:16, 23 October 2019
Line 1:		Line 1:

	==Fluorescent protein KillerRed in the bleached state==		==Fluorescent protein KillerRed in the bleached state==
-	<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>	+	<StructureSection load='2wis' size='340' side='right'caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Anthomedusae sp. dc-2005]]		[[Category: Anthomedusae sp. dc-2005]]
		+	[[Category: Large Structures]]
	[[Category: Blanchoin, L]]		[[Category: Blanchoin, L]]
	[[Category: Bourgeois, D]]		[[Category: Bourgeois, D]]

OCA at 07:55, 6 March 2019

OCA — Wed, 06 Mar 2019 07:55:05 GMT

←Older revision		Revision as of 07:55, 6 March 2019
Line 1:		Line 1:

	==Fluorescent protein KillerRed in the bleached state==		==Fluorescent protein KillerRed in the bleached state==
-	<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>	+	<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>

OCA at 05:37, 8 March 2018

OCA — Thu, 08 Mar 2018 05:37:26 GMT

←Older revision		Revision as of 05:37, 8 March 2018
Line 1:		Line 1:
-	==~~FLUORESCENT PROTEIN KILLERRED IN THE BLEACHED STATE~~==	+
		+	==Fluorescent protein KillerRed in the bleached state==
	<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://pdbe.org/2wis PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://pdbe.org/2wis PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wis ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/2wis_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/2wis_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:17, 8 February 2016

OCA — Mon, 08 Feb 2016 06:17:06 GMT

←Older revision		Revision as of 06:17, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Eukaryota Eukaryota~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthomedusae_sp._dc-2005 Anthomedusae sp. dc-2005]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://pdbe.org/2wis PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wis ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2wis" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Eukaryota~~]]	+	[[Category: Anthomedusae sp. dc-2005]]
	[[Category: Blanchoin, L]]		[[Category: Blanchoin, L]]
	[[Category: Bourgeois, D]]		[[Category: Bourgeois, D]]

OCA at 10:33, 20 January 2015

OCA — Tue, 20 Jan 2015 10:33:15 GMT

←Older revision		Revision as of 10:33, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Eukaryota]]		[[Category: Eukaryota]]
-	[[Category: Blanchoin, L.]]	+	[[Category: Blanchoin, L]]
-	[[Category: Bourgeois, D.]]	+	[[Category: Bourgeois, D]]
-	[[Category: Carpentier, P.]]	+	[[Category: Carpentier, P]]
-	[[Category: Violot, S.]]	+	[[Category: Violot, S]]
	[[Category: Cali]]		[[Category: Cali]]
	[[Category: Fluorescent protein]]		[[Category: Fluorescent protein]]
	[[Category: Reactive oxygen species]]		[[Category: Reactive oxygen species]]
	[[Category: Ro]]		[[Category: Ro]]

OCA at 01:33, 1 October 2014

OCA — Wed, 01 Oct 2014 01:33:25 GMT

←Older revision		Revision as of 01:33, 1 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2wis.~~png~~\|~~left~~\|200px]]	+	==FLUORESCENT PROTEIN KILLERRED IN THE BLEACHED STATE==
		+	<StructureSection load='2wis' size='340' side='right' caption='[[2wis]], [[Resolution\|resolution]] 2.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WIS FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wiq\|2wiq]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wis FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wis OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wis RCSB], [http://www.ebi.ac.uk/pdbsum/2wis PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/2wis_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The red fluorescent protein KillerRed, engineered from the hydrozoan chromoprotein anm2CP, has been reported to induce strong cytotoxicity through the chromophore assisted light inactivation (CALI) effect. Here, we present the X-ray structures of KillerRed in its native and bleached states. A long water-filled channel is revealed, connecting the methylene bridge of the chromophore to the solvent. This channel facilitates the transit of oxygen and of reactive oxygen species (ROS) formed by reaction with the excited chromophore. The functional roles of key mutations used to produce KillerRed are discussed, strong chromophore distortions in the bleached state are revealed, and mechanisms for ROS production and self protection are proposed. The presence of a partially mature, photo-resistant, green-emitting state is characterized, which accounts for enhanced CALI by "pre-bleached" KillerRed.

-	~~{{STRUCTURE_2wis\| PDB=2wis \| SCENE= }}~~	+	Structural basis for the phototoxicity of the fluorescent protein KillerRed.,Carpentier P, Violot S, Blanchoin L, Bourgeois D FEBS Lett. 2009 Sep 3;583(17):2839-42. Epub 2009 Jul 30. PMID:19646983<ref>PMID:19646983</ref>

-	~~===FLUORESCENT PROTEIN KILLERRED IN THE BLEACHED STATE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19646983}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2wis]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Eukaryota Eukaryota]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019646983<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Eukaryota]]		[[Category: Eukaryota]]
	[[Category: Blanchoin, L.]]		[[Category: Blanchoin, L.]]

OCA: Protected "2wis" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 22:21:42 GMT

Protected "2wis" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:21, 7 January 2013

OCA at 22:21, 7 January 2013

OCA — Mon, 07 Jan 2013 22:21:24 GMT

←Older revision		Revision as of 22:21, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2wis.png\|left\|200px]]		[[Image:2wis.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2wis", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2wis\| PDB=2wis \| SCENE= }}		{{STRUCTURE_2wis\| PDB=2wis \| SCENE= }}

	===FLUORESCENT PROTEIN KILLERRED IN THE BLEACHED STATE===		===FLUORESCENT PROTEIN KILLERRED IN THE BLEACHED STATE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19646983}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19646983 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19646983}}		{{ABSTRACT_PUBMED_19646983}}

	==About this Structure==		==About this Structure==
-	~~2WIS~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA].	+	[[2wis]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WIS OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19646983~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019646983</ref><references group="xtra"/>
	[[Category: Eukaryota]]		[[Category: Eukaryota]]
	[[Category: Blanchoin, L.]]		[[Category: Blanchoin, L.]]
Line 33:		Line 21:
	[[Category: Reactive oxygen species]]		[[Category: Reactive oxygen species]]
	[[Category: Ro]]		[[Category: Ro]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 08:36:20 2009''