2wtn - Revision history

OCA at 10:17, 9 May 2024

OCA — Thu, 09 May 2024 10:17:01 GMT

←Older revision		Revision as of 10:17, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='2wtn' size='340' side='right'caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wtn' size='340' side='right'caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_51982 Atcc 51982~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Butyrivibrio_proteoclasticus Butyrivibrio proteoclasticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WTN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wtm\|2wtm]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [https://pdbe.org/2wtn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [https://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [https://pdbe.org/2wtn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [https://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D2YW37_9FIRM D2YW37_9FIRM]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 51982~~]]	+	[[Category: Butyrivibrio proteoclasticus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arcus~~, V L~~]]	+	[[Category: Arcus VL]]
-	[[Category: Goldstone~~, D C]]~~	+	[[Category: Goldstone DC]]
-	~~[[Category: Esterase]]~~	+
-	~~[[Category: Ferulic acid esterase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 11:15, 6 April 2022

OCA — Wed, 06 Apr 2022 11:15:52 GMT

←Older revision		Revision as of 11:15, 6 April 2022
Line 3:		Line 3:
	<StructureSection load='2wtn' size='340' side='right'caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wtn' size='340' side='right'caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_51982 Atcc 51982]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2WTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_51982 Atcc 51982]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WTN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2wtm\|2wtm]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [~~http~~://pdbe.org/2wtn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [https://pdbe.org/2wtn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [https://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:10, 1 July 2020

OCA — Wed, 01 Jul 2020 09:10:17 GMT

←Older revision		Revision as of 09:10, 1 July 2020
Line 1:		Line 1:

	==Ferulic Acid bound to Est1E from Butyrivibrio proteoclasticus==		==Ferulic Acid bound to Est1E from Butyrivibrio proteoclasticus==
-	<StructureSection load='2wtn' size='340' side='right' caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='2wtn' size='340' side='right'caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51982 Atcc 51982]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2WTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51982 Atcc 51982]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2WTN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://pdbe.org/2wtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://pdbe.org/2wtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 51982]]		[[Category: Atcc 51982]]
		+	[[Category: Large Structures]]
	[[Category: Arcus, V L]]		[[Category: Arcus, V L]]
	[[Category: Goldstone, D C]]		[[Category: Goldstone, D C]]

OCA at 09:37, 26 September 2018

OCA — Wed, 26 Sep 2018 09:37:28 GMT

←Older revision		Revision as of 09:37, 26 September 2018
Line 1:		Line 1:
-	==~~FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS~~==	+
		+	==Ferulic Acid bound to Est1E from Butyrivibrio proteoclasticus==
	<StructureSection load='2wtn' size='340' side='right' caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wtn' size='340' side='right' caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://pdbe.org/2wtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://pdbe.org/2wtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2wtn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wt/2wtn_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wt/2wtn_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:32, 7 February 2016

OCA — Sun, 07 Feb 2016 05:32:11 GMT

←Older revision		Revision as of 05:32, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2wtn' size='340' side='right' caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2wtn' size='340' side='right' caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_proteoclasticum Clostridium proteoclasticum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51982 Atcc 51982]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WTN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://pdbe.org/2wtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wtn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2wtn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clostridium proteoclasticum~~]]	+	[[Category: Atcc 51982]]
	[[Category: Arcus, V L]]		[[Category: Arcus, V L]]
	[[Category: Goldstone, D C]]		[[Category: Goldstone, D C]]

OCA at 09:42, 20 January 2015

OCA — Tue, 20 Jan 2015 09:42:46 GMT

←Older revision		Revision as of 09:42, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_proteoclasticum Clostridium proteoclasticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WTN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_proteoclasticum Clostridium proteoclasticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WTN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium proteoclasticum]]		[[Category: Clostridium proteoclasticum]]
-	[[Category: Arcus, V L.]]	+	[[Category: Arcus, V L]]
-	[[Category: Goldstone, D C.]]	+	[[Category: Goldstone, D C]]
	[[Category: Esterase]]		[[Category: Esterase]]
	[[Category: Ferulic acid esterase]]		[[Category: Ferulic acid esterase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 04:24, 3 October 2014

OCA — Fri, 03 Oct 2014 04:24:30 GMT

←Older revision		Revision as of 04:24, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2wtn\| PDB=2wtn \| SCENE= }}~~	+	==FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS==
-	===FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS===	+	<StructureSection load='2wtn' size='340' side='right' caption='[[2wtn]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{ABSTRACT_PUBMED_20058325}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_proteoclasticum Clostridium proteoclasticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2WTN FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FER:3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC+ACID'>FER</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wtm\|2wtm]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2wtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2wtn RCSB], [http://www.ebi.ac.uk/pdbsum/2wtn PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wt/2wtn_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The release of polysaccharide from the plant cell wall is a key process to release the stored energy from plant biomass. Within the ruminant digestive system, a host of commensal microorganisms speed the breakdown of plant cell matter releasing fermentable sugars. The presence of phenolic compounds, most notably ferulic acid (FA), esterified within the cell wall is thought to pose a significant impediment to the degradation of the plant cell wall. The structure of a FA esterase from the ruminant bacterium Butyrivibrio proteoclasticus has been determined in two different space groups, in both the apo-form, and the ligand bound form with FA located in the active site. The structure reveals a new lid domain that has no structural homologues in the PDB. The flexibility of the lid domain is evident by the presence of three different conformations adopted by different molecules in the crystals. In the FA-bound structures, these conformations show sequential binding and closing of the lid domain over the substrate. Enzymatic activity assays demonstrate a broad activity against plant-derived hemicellulose, releasing at least four aromatic compounds including FA, coumaric acid, coumarin-3-carboxylic acid, and cinnamic acid. The rumen is a complex ecosystem that efficiently degrades plant biomass and the genome of B. proteoclasticus contains greater than 130 enzymes, which are potentially involved in this process of which Est1E is the first to be well characterized. Proteins 2010;. (c) 2009 Wiley-Liss, Inc.

-	~~==About this Structure==~~	+	Structural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus.,Goldstone DC, Villas-Boas SG, Till M, Kelly WJ, Attwood GT, Arcus VL Proteins. 2009 Nov 24. PMID:20058325<ref>PMID:20058325</ref>
-	~~[[2wtn]] is~~ a ~~2 chain structure with sequence~~ from ~~[http://en~~.~~wikipedia~~.~~org/wiki/Clostridium_proteoclasticum Clostridium proteoclasticum]~~. ~~Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:020058325</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Clostridium proteoclasticum]]		[[Category: Clostridium proteoclasticum]]
	[[Category: Arcus, V L.]]		[[Category: Arcus, V L.]]

OCA at 21:03, 17 April 2013

OCA — Wed, 17 Apr 2013 21:03:15 GMT

←Older revision		Revision as of 21:03, 17 April 2013
Line 1:		Line 1:
-	[[Image:2wtn.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_2wtn", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2wtn\| PDB=2wtn \| SCENE= }}		{{STRUCTURE_2wtn\| PDB=2wtn \| SCENE= }}
-
	===FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS===		===FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20058325}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20058325 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20058325}}		{{ABSTRACT_PUBMED_20058325}}

Line 22:		Line 7:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:020058325</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020058325</ref><references group="xtra"/><references/>
	[[Category: Clostridium proteoclasticum]]		[[Category: Clostridium proteoclasticum]]
	[[Category: Arcus, V L.]]		[[Category: Arcus, V L.]]

OCA: Protected "2wtn" [edit=sysop:move=sysop]

OCA — Wed, 15 Jun 2011 05:18:29 GMT

Protected "2wtn" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:18, 15 June 2011

OCA at 05:18, 15 June 2011

OCA — Wed, 15 Jun 2011 05:18:27 GMT

←Older revision		Revision as of 05:18, 15 June 2011
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2wtn.png\|left\|200px]]
-	[[Image:2wtn.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2WTN~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Clostridium_proteoclasticum Clostridium proteoclasticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA].	+	[[2wtn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_proteoclasticum Clostridium proteoclasticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WTN OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20058325~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020058325</ref><references group="xtra"/>
	[[Category: Clostridium proteoclasticum]]		[[Category: Clostridium proteoclasticum]]
	[[Category: Arcus, V L.]]		[[Category: Arcus, V L.]]
Line 30:		Line 29:
	[[Category: Ferulic acid esterase]]		[[Category: Ferulic acid esterase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 20 15:32:38 2010''