2xjo - Revision history

OCA at 10:39, 16 August 2023

OCA — Wed, 16 Aug 2023 10:39:57 GMT

←Older revision		Revision as of 10:39, 16 August 2023
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	<StructureSection load='2xjo' size='340' side='right'caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2xjo' size='340' side='right'caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43765 Atcc 43765~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XJO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1umn\|1umn]], [[2bw1\|2bw1]], [[2cf7\|2cf7]], [[2ux1\|2ux1]], [[2v15\|2v15]], [[2xkq\|2xkq]], [[2xjn\|2xjn]], [[2xjm\|2xjm]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [https://pdbe.org/2xjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [https://www.ebi.ac.uk/pdbsum/2xjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xjo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [https://pdbe.org/2xjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [https://www.ebi.ac.uk/pdbsum/2xjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xjo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DPS_STRSU DPS_STRSU]] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It binds and incorporates Fe(2+) iron. Is responsible for hydrogen peroxide resistance. Does not bind DNA.	+	[https://www.uniprot.org/uniprot/DPS_STRSU DPS_STRSU] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It binds and incorporates Fe(2+) iron. Is responsible for hydrogen peroxide resistance. Does not bind DNA.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43765]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Haataja, S]]	+	[[Category: Streptococcus suis]]
-	[[Category: Haikarainen, T]]	+	[[Category: Haataja S]]
-	[[Category: Nounesis, G]]	+	[[Category: Haikarainen T]]
-	[[Category: Papageorgiou~~, A C~~]]	+	[[Category: Nounesis G]]
-	[[Category: Stavros, P]]	+	[[Category: Papageorgiou AC]]
-	[[Category: Thanassoulas, A]]	+	[[Category: Stavros P]]
-	~~[[Category: Iron storage]]~~	+	[[Category: Thanassoulas A]]
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 08:41, 10 November 2021

OCA — Wed, 10 Nov 2021 08:41:11 GMT

←Older revision		Revision as of 08:41, 10 November 2021
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	<StructureSection load='2xjo' size='340' side='right'caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2xjo' size='340' side='right'caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43765 Atcc 43765]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2XJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43765 Atcc 43765]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XJO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1umn\|1umn]], [[2bw1\|2bw1]], [[2cf7\|2cf7]], [[2ux1\|2ux1]], [[2v15\|2v15]], [[2xkq\|2xkq]], [[2xjn\|2xjn]], [[2xjm\|2xjm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1umn\|1umn]], [[2bw1\|2bw1]], [[2cf7\|2cf7]], [[2ux1\|2ux1]], [[2v15\|2v15]], [[2xkq\|2xkq]], [[2xjn\|2xjn]], [[2xjm\|2xjm]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [~~http~~://pdbe.org/2xjo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2xjo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2xjo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [https://pdbe.org/2xjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [https://www.ebi.ac.uk/pdbsum/2xjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xjo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DPS_STRSU DPS_STRSU]] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It binds and incorporates Fe(2+) iron. Is responsible for hydrogen peroxide resistance. Does not bind DNA.	+	[[https://www.uniprot.org/uniprot/DPS_STRSU DPS_STRSU]] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It binds and incorporates Fe(2+) iron. Is responsible for hydrogen peroxide resistance. Does not bind DNA.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 07:46, 24 July 2019

OCA — Wed, 24 Jul 2019 07:46:33 GMT

←Older revision		Revision as of 07:46, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of Streptococcus suis Dpr with nickel==		==Crystal structure of Streptococcus suis Dpr with nickel==
-	<StructureSection load='2xjo' size='340' side='right' caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='2xjo' size='340' side='right'caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43765 Atcc 43765]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XJO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43765 Atcc 43765]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XJO FirstGlance]. <br>
Line 21:		Line 21:

	==See Also==		==See Also==
-	*[[Ferritin\|Ferritin]]	+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 27:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43765]]		[[Category: Atcc 43765]]
		+	[[Category: Large Structures]]
	[[Category: Haataja, S]]		[[Category: Haataja, S]]
	[[Category: Haikarainen, T]]		[[Category: Haikarainen, T]]

OCA at 09:28, 3 October 2018

OCA — Wed, 03 Oct 2018 09:28:58 GMT

←Older revision		Revision as of 09:28, 3 October 2018
Line 1:		Line 1:

-	==~~CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL~~==	+	==Crystal structure of Streptococcus suis Dpr with nickel==
	<StructureSection load='2xjo' size='340' side='right' caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2xjo' size='340' side='right' caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==

OCA at 13:54, 4 August 2016

OCA — Thu, 04 Aug 2016 13:54:41 GMT

←Older revision		Revision as of 13:54, 4 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL==		==CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL==
	<StructureSection load='2xjo' size='340' side='right' caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2xjo' size='340' side='right' caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_suis Streptococcus suis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XJO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43765 Atcc 43765]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XJO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1umn\|1umn]], [[2bw1\|2bw1]], [[2cf7\|2cf7]], [[2ux1\|2ux1]], [[2v15\|2v15]], [[2xkq\|2xkq]], [[2xjn\|2xjn]], [[2xjm\|2xjm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1umn\|1umn]], [[2bw1\|2bw1]], [[2cf7\|2cf7]], [[2ux1\|2ux1]], [[2v15\|2v15]], [[2xkq\|2xkq]], [[2xjn\|2xjn]], [[2xjm\|2xjm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [http://www.ebi.ac.uk/pdbsum/2xjo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [http://pdbe.org/2xjo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [http://www.ebi.ac.uk/pdbsum/2xjo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xjo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2xjo" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 24:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Streptococcus suis~~]]	+	[[Category: Atcc 43765]]
	[[Category: Haataja, S]]		[[Category: Haataja, S]]
	[[Category: Haikarainen, T]]		[[Category: Haikarainen, T]]

OCA at 15:19, 24 December 2014

OCA — Wed, 24 Dec 2014 15:19:40 GMT

←Older revision		Revision as of 15:19, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [http://www.ebi.ac.uk/pdbsum/2xjo PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [http://www.ebi.ac.uk/pdbsum/2xjo PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DPS_STRSU DPS_STRSU]] Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It binds and incorporates Fe(2+) iron. Is responsible for hydrogen peroxide resistance. Does not bind DNA.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Streptococcus suis]]		[[Category: Streptococcus suis]]
-	[[Category: Haataja, S.]]	+	[[Category: Haataja, S]]
-	[[Category: Haikarainen, T.]]	+	[[Category: Haikarainen, T]]
-	[[Category: Nounesis, G.]]	+	[[Category: Nounesis, G]]
-	[[Category: Papageorgiou, A C.]]	+	[[Category: Papageorgiou, A C]]
-	[[Category: Stavros, P.]]	+	[[Category: Stavros, P]]
-	[[Category: Thanassoulas, A.]]	+	[[Category: Thanassoulas, A]]
	[[Category: Iron storage]]		[[Category: Iron storage]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 12:48, 22 October 2014

OCA — Wed, 22 Oct 2014 12:48:30 GMT

←Older revision		Revision as of 12:48, 22 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2xjo.~~png~~\|~~left~~\|~~200px~~]]	+	==CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL==
		+	<StructureSection load='2xjo' size='340' side='right' caption='[[2xjo]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XJO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1umn\|1umn]], [[2bw1\|2bw1]], [[2cf7\|2cf7]], [[2ux1\|2ux1]], [[2v15\|2v15]], [[2xkq\|2xkq]], [[2xjn\|2xjn]], [[2xjm\|2xjm]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xjo RCSB], [http://www.ebi.ac.uk/pdbsum/2xjo PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The use of protein cages for the creation of novel inorganic nanomaterials has attracted considerable attention in recent years. Ferritins are among the most commonly used protein cages in nanoscience. Accordingly, the binding of various metals to ferritins has been studied extensively. Dps (DNA-binding protein from starved cells)-like proteins belong to the ferritin superfamily. In contrast to ferritins, Dps-like proteins form 12-mers instead of 24-mers, have a different ferroxidase center, and are able to store a smaller amount of iron atoms in a hollow cavity (up to approximately 500, instead of the approximately 4500 iron atoms found in ferritins). With the exception of iron, the binding of other metal cations to Dps proteins has not been studied in detail. Here, the binding of six divalent metal ions (Zn(2+), Mn(2+), Ni(2+), Co(2+), Cu(2+), and Mg(2+)) to Streptococcus suisDps-like peroxide resistance protein (SsDpr) was characterized by X-ray crystallography and isothermal titration calorimetry (ITC). All metal cations, except for Mg(2+), were found to bind similarly to the ferroxidase center, with moderate affinity (binding constants between 0.1x10(5) M(-1) and 5x10(5) M(-1)). The stoichiometry of binding, as deduced by ITC data, suggested the presence of a dication ferroxidase site. No other metal binding sites were identified in the protein. The results presented here demonstrate the ability of SsDpr to bind various metals as substitutes for iron and to help in better understanding protein-metal interactions in the Dps family of proteins as potential metal nanocontainers.

-	~~{{STRUCTURE_2xjo\| PDB=2xjo \| SCENE= }}~~	+	Structural and Thermodynamic Characterization of Metal Ion Binding in Streptococcus suis Dpr.,Haikarainen T, Thanassoulas A, Stavros P, Nounesis G, Haataja S, Papageorgiou AC J Mol Biol. 2010 Nov 5. PMID:21056572<ref>PMID:21056572</ref>

-	~~===CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_21056572}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2xjo]] is~~ a ~~12 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptococcus_suis Streptococcus suis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA].~~	+

	==See Also==		==See Also==
	*[[Ferritin\|Ferritin]]		*[[Ferritin\|Ferritin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:021056572<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Streptococcus suis]]		[[Category: Streptococcus suis]]
	[[Category: Haataja, S.]]		[[Category: Haataja, S.]]

OCA at 06:44, 20 October 2012

OCA — Sat, 20 Oct 2012 06:44:43 GMT

←Older revision		Revision as of 06:44, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[2xjo]] is a 12 chain structure ~~of [[Ferritin]]~~ with sequence from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA].	+	[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA].

	==See Also==		==See Also==

OCA at 14:09, 25 July 2012

OCA — Wed, 25 Jul 2012 14:09:33 GMT

←Older revision		Revision as of 14:09, 25 July 2012
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	[[Image:2xjo.png\|left\|200px]]		[[Image:2xjo.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2xjo\| PDB=2xjo \| SCENE= }}		{{STRUCTURE_2xjo\| PDB=2xjo \| SCENE= }}

	===CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL===		===CRYSTAL STRUCTURE OF STREPTOCOCCUS SUIS DPR WITH NICKEL===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_21056572}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 21056572 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_21056572}}		{{ABSTRACT_PUBMED_21056572}}

	==About this Structure==		==About this Structure==
-	[[2xjo]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA].	+	[[2xjo]] is a 12 chain structure of [[Ferritin]] with sequence from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJO OCA].
		+
		+	==See Also==
		+	*[[Ferritin\|Ferritin]]

	==Reference==		==Reference==

OCA: Protected "2xjo" [edit=sysop:move=sysop]

OCA — Sun, 30 Oct 2011 07:04:09 GMT

Protected "2xjo" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:04, 30 October 2011