2xts - Revision history

OCA at 13:59, 1 February 2024

OCA — Thu, 01 Feb 2024 13:59:38 GMT

←Older revision		Revision as of 13:59, 1 February 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XTS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XTS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.33Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1wq0\|1wq0]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [https://pdbe.org/2xts PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [https://www.ebi.ac.uk/pdbsum/2xts PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [https://pdbe.org/2xts PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [https://www.ebi.ac.uk/pdbsum/2xts PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/P72178_PARDE P72178_PARDE]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612]	+	[https://www.uniprot.org/uniprot/P72178_PARDE P72178_PARDE] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 25:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
-	~~[[Category: Sulfite dehydrogenase]]~~	+	[[Category: Bardischewski F]]
-	[[Category: Bardischewski, F]]	+	[[Category: Faust A]]
-	[[Category: Faust, A]]	+	[[Category: Friedrich CG]]
-	[[Category: Friedrich~~, C G~~]]	+	[[Category: Klink BU]]
-	[[Category: Klink~~, B U~~]]	+	[[Category: Panjikar S]]
-	[[Category: Panjikar, S]]	+	[[Category: Quentmeier A]]
-	[[Category: Quentmeier, A]]	+	[[Category: Scheidig AJ]]
-	~~[[Category: Sanctis, D de~~]]	+	[[Category: Zander U]]
-	[[Category: Scheidig~~, A J~~]]	+	[[Category: De Sanctis D]]
-	[[Category: Zander, U]]	+
-	[[Category: ~~Electron transfer]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Molybdenum cofactor]]~~	+
-	~~[[Category: Oxidoreductase-electron transport complex]]~~	+
-	~~[[Category: Sox system]]~~	+
-	~~[[Category: Sulfane oxidation~~]]	+

OCA at 12:17, 27 April 2022

OCA — Wed, 27 Apr 2022 12:17:14 GMT

←Older revision		Revision as of 12:17, 27 April 2022
Line 3:		Line 3:
	<StructureSection load='2xts' size='340' side='right'caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='2xts' size='340' side='right'caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2XTS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XTS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wq0\|1wq0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1wq0\|1wq0]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [~~http~~://pdbe.org/2xts PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2xts PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [https://pdbe.org/2xts PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [https://www.ebi.ac.uk/pdbsum/2xts PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/P72178_PARDE P72178_PARDE]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612]	+	[[https://www.uniprot.org/uniprot/P72178_PARDE P72178_PARDE]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 12:20, 22 July 2020

OCA — Wed, 22 Jul 2020 12:20:53 GMT

←Older revision		Revision as of 12:20, 22 July 2020
Line 1:		Line 1:

	==Crystal Structure of the Sulfane Dehydrogenase SoxCD from Paracoccus pantotrophus==		==Crystal Structure of the Sulfane Dehydrogenase SoxCD from Paracoccus pantotrophus==
-	<StructureSection load='2xts' size='340' side='right' caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>	+	<StructureSection load='2xts' size='340' side='right'caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2XTS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2XTS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wq0\|1wq0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wq0\|1wq0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://pdbe.org/2xts PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://pdbe.org/2xts PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Sulfite dehydrogenase]]		[[Category: Sulfite dehydrogenase]]

OCA at 08:56, 10 October 2018

OCA — Wed, 10 Oct 2018 08:56:05 GMT

←Older revision		Revision as of 08:56, 10 October 2018
Line 1:		Line 1:

-	==~~CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS~~==	+	==Crystal Structure of the Sulfane Dehydrogenase SoxCD from Paracoccus pantotrophus==
	<StructureSection load='2xts' size='340' side='right' caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='2xts' size='340' side='right' caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 32:		Line 32:
	[[Category: Panjikar, S]]		[[Category: Panjikar, S]]
	[[Category: Quentmeier, A]]		[[Category: Quentmeier, A]]
-	[[Category: Sanctis, D De]]	+	[[Category: Sanctis, D de]]
	[[Category: Scheidig, A J]]		[[Category: Scheidig, A J]]
	[[Category: Zander, U]]		[[Category: Zander, U]]

OCA at 17:05, 5 August 2016

OCA — Fri, 05 Aug 2016 17:05:07 GMT

←Older revision		Revision as of 17:05, 5 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS==		==CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS==
	<StructureSection load='2xts' size='340' side='right' caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>		<StructureSection load='2xts' size='340' side='right' caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wq0\|1wq0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wq0\|1wq0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://pdbe.org/2xts PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xts ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2xts" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 04:16, 25 December 2014

OCA — Thu, 25 Dec 2014 04:16:52 GMT

←Older revision		Revision as of 04:16, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/P72178_PARDE P72178_PARDE]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 08:02, 12 November 2014

OCA — Wed, 12 Nov 2014 08:02:42 GMT

←Older revision		Revision as of 08:02, 12 November 2014
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-	[[~~Image:~~2xts.~~png~~\|~~left~~\|~~200px~~]]	+	==CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS==
		+	<StructureSection load='2xts' size='340' side='right' caption='[[2xts]], [[Resolution\|resolution]] 1.33Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2xts]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XTS FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2MO:MOLYBDENUM+(IV)OXIDE'>2MO</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MTE:PHOSPHONIC+ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER'>MTE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wq0\|1wq0]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sulfite_dehydrogenase Sulfite dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.2.1 1.8.2.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xts FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xts OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xts RCSB], [http://www.ebi.ac.uk/pdbsum/2xts PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The sulfur cycle enzyme sulfane dehydrogenase SoxCD is an essential component of the sulfur oxidation (Sox) enzyme system of Paracoccus pantotrophus. SoxCD catalyzes a six-electron oxidation reaction within the Sox cycle. SoxCD is an alpha(2)beta(2) heterotetrameric complex of the molybdenum cofactor-containing SoxC protein and the diheme c-type cytochrome SoxD with the heme domains D(1) and D(2). SoxCD(1) misses the heme-2 domain D(2) and is catalytically as active as SoxCD. The crystal structure of SoxCD(1) was solved at 1.33 A. The substrate of SoxCD is the outer (sulfane) sulfur of Cys-110-persulfide located at the C-terminal peptide swinging arm of SoxY of the SoxYZ carrier complex. The SoxCD(1) substrate funnel toward the molybdopterin is narrow and partially shielded by side-chain residues of SoxD(1). For access of the sulfane-sulfur of SoxY-Cys-110 persulfide we propose that (i) the blockage by SoxD-Arg-98 is opened via interaction with the C terminus of SoxY and (ii) the C-terminal peptide VTIGGCGG of SoxY provides interactions with the entrance path such that the cysteine-bound persulfide is optimally positioned near the molybdenum atom. The subsequent oxidation reactions of the sulfane-sulfur are initiated by the nucleophilic attack of the persulfide anion on the molybdenum atom that is, in turn, reduced. The close proximity of heme-1 to the molybdopterin allows easy acceptance of the electrons. Because SoxYZ, SoxXA, and SoxB are already structurally characterized, with SoxCD(1) the structures of all key enzymes of the Sox cycle are known with atomic resolution.

-	~~{{STRUCTURE_2xts\| PDB=2xts \| SCENE= }}~~	+	Structural Basis for the Oxidation of Protein-bound Sulfur by the Sulfur Cycle Molybdohemo-Enzyme Sulfane Dehydrogenase SoxCD.,Zander U, Faust A, Klink BU, de Sanctis D, Panjikar S, Quentmeier A, Bardischewsky F, Friedrich CG, Scheidig AJ J Biol Chem. 2011 Mar 11;286(10):8349-60. Epub 2010 Dec 8. PMID:21147779<ref>PMID:21147779</ref>

-	~~===CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_21147779}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2xts]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021147779<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Sulfite dehydrogenase]]		[[Category: Sulfite dehydrogenase]]
-	[[Category: Bardischewski, F.]]	+	[[Category: Bardischewski, F]]
-	[[Category: Faust, A.]]	+	[[Category: Faust, A]]
-	[[Category: Friedrich, C G.]]	+	[[Category: Friedrich, C G]]
-	[[Category: Klink, B U.]]	+	[[Category: Klink, B U]]
-	[[Category: Panjikar, S.]]	+	[[Category: Panjikar, S]]
-	[[Category: Quentmeier, A.]]	+	[[Category: Quentmeier, A]]
-	[[Category: Sanctis, D De.]]	+	[[Category: Sanctis, D De]]
-	[[Category: Scheidig, A J.]]	+	[[Category: Scheidig, A J]]
-	[[Category: Zander, U.]]	+	[[Category: Zander, U]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Heme]]		[[Category: Heme]]

OCA at 13:26, 6 February 2013

OCA — Wed, 06 Feb 2013 13:26:07 GMT

←Older revision		Revision as of 13:26, 6 February 2013
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	[[Image:2xts.png\|left\|200px]]		[[Image:2xts.png\|left\|200px]]

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	===CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS===		===CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS===

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~21147779~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:021147779</ref><references group="xtra"/>
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Sulfite dehydrogenase]]		[[Category: Sulfite dehydrogenase]]
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	[[Category: Scheidig, A J.]]		[[Category: Scheidig, A J.]]
	[[Category: Zander, U.]]		[[Category: Zander, U.]]
		+	[[Category: Electron transfer]]
		+	[[Category: Heme]]
		+	[[Category: Molybdenum cofactor]]
		+	[[Category: Oxidoreductase-electron transport complex]]
		+	[[Category: Sox system]]
		+	[[Category: Sulfane oxidation]]

OCA: Protected "2xts" [edit=sysop:move=sysop]

OCA — Wed, 30 Mar 2011 07:28:02 GMT

Protected "2xts" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:28, 30 March 2011

OCA at 07:28, 30 March 2011

OCA — Wed, 30 Mar 2011 07:28:00 GMT

←Older revision		Revision as of 07:28, 30 March 2011
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-	~~{{Seed}}~~	+	[[Image:2xts.png\|left\|200px]]
-	[[Image:2xts.~~jpg~~\|left\|200px]]	+

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	===CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS===		===CRYSTAL STRUCTURE OF THE SULFANE DEHYDROGENASE SOXCD FROM PARACOCCUS PANTOTROPHUS===

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		+	The line below this paragraph, {{ABSTRACT_PUBMED_21147779}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21147779 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21147779}}

	==About this Structure==		==About this Structure==
-	~~2XTS~~ is a 4 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA].	+	[[2xts]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XTS OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:21147779</ref><references group="xtra"/>
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Sulfite dehydrogenase]]		[[Category: Sulfite dehydrogenase]]
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	[[Category: Scheidig, A J.]]		[[Category: Scheidig, A J.]]
	[[Category: Zander, U.]]		[[Category: Zander, U.]]
-	[[Category: Electron transfer]]
-	[[Category: Heme]]
-	[[Category: Molybdenum cofactor]]
-	[[Category: Oxidoreductase-electron transport complex]]
-	[[Category: Sox system]]
-	[[Category: Sulfane oxidation]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 8 11:46:02 2010''