2yb7 - Revision history

OCA at 08:11, 23 August 2023

OCA — Wed, 23 Aug 2023 08:11:47 GMT

←Older revision		Revision as of 08:11, 23 August 2023
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	<StructureSection load='2yb7' size='340' side='right'caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2yb7' size='340' side='right'caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"ruminiclostridium_thermocellum"_(viljoen_et_al._1926)_yutin_and_galperin_2013 "ruminiclostridium thermocellum" (viljoen et al. 1926) yutin and galperin 2013~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA~~</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL~~</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene><~~/td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [https://pdbe.org/2yb7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [https://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [https://pdbe.org/2yb7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [https://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acetivibrio thermocellus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Correia~~, M A.S~~]]	+	[[Category: Correia MAS]]
-	[[Category: Coutinho~~, P M~~]]	+	[[Category: Coutinho PM]]
-	[[Category: Flint~~, J E~~]]	+	[[Category: Flint JE]]
-	[[Category: Fontes~~, C M.G A~~]]	+	[[Category: Fontes CMGA]]
-	[[Category: Gilbert~~, H J~~]]	+	[[Category: Gilbert HJ]]
-	[[Category: Henrissat, B]]	+	[[Category: Henrissat B]]
-	[[Category: McKee~~, L S~~]]	+	[[Category: McKee LS]]
-	[[Category: Montanier~~, C Y~~]]	+	[[Category: Montanier CY]]
-	[[Category: Polizzi~~, S J~~]]	+	[[Category: Polizzi SJ]]
-	[[Category: Prates~~, J A.M~~]]	+	[[Category: Prates JAM]]
-	[[Category: Zhu, Y]]	+	[[Category: Zhu Y]]
-	~~[[Category: Carbohydrate]]~~	+
-	~~[[Category: Carbohydrate binding module]]~~	+
-	~~[[Category: Sugar binding protein~~]]	+

OCA at 15:03, 17 November 2021

OCA — Wed, 17 Nov 2021 15:03:22 GMT

←Older revision		Revision as of 15:03, 17 November 2021
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	<StructureSection load='2yb7' size='340' side='right'caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2yb7' size='340' side='right'caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca.weizmann~~.~~ac.il/oca-docs~~/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"ruminiclostridium_thermocellum"_(viljoen_et_al._1926)_yutin_and_galperin_2013 "ruminiclostridium thermocellum" (viljoen et al. 1926) yutin and galperin 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=~~GLA~~:~~ALPHA+D-GALACTOSE~~'>~~GLA~~</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [~~http~~://pdbe.org/2yb7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [https://pdbe.org/2yb7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [https://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:53, 7 August 2019

OCA — Wed, 07 Aug 2019 06:53:08 GMT

←Older revision		Revision as of 06:53, 7 August 2019
Line 1:		Line 1:

	==CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose==		==CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose==
-	<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='2yb7' size='340' side='right'caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Correia, M A.S]]		[[Category: Correia, M A.S]]
	[[Category: Coutinho, P M]]		[[Category: Coutinho, P M]]

OCA at 10:46, 3 August 2017

OCA — Thu, 03 Aug 2017 10:46:24 GMT

←Older revision		Revision as of 10:46, 3 August 2017
Line 3:		Line 3:
	<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene>, <scene name='pdbligand=~~GLA~~:~~ALPHA+D-GALACTOSE~~'>~~GLA~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://pdbe.org/2yb7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://pdbe.org/2yb7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 27405]]
	[[Category: Correia, M A.S]]		[[Category: Correia, M A.S]]
	[[Category: Coutinho, P M]]		[[Category: Coutinho, P M]]
Line 28:		Line 27:
	[[Category: Gilbert, H J]]		[[Category: Gilbert, H J]]
	[[Category: Henrissat, B]]		[[Category: Henrissat, B]]
-	[[Category: ~~Mckee~~, L S]]	+	[[Category: McKee, L S]]
	[[Category: Montanier, C Y]]		[[Category: Montanier, C Y]]
	[[Category: Polizzi, S J]]		[[Category: Polizzi, S J]]

OCA at 01:43, 5 August 2016

OCA — Fri, 05 Aug 2016 01:43:32 GMT

←Older revision		Revision as of 01:43, 5 August 2016
Line 1:		Line 1:
		+
	==CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose==		==CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose==
	<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_thermocellum Clostridium thermocellum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://pdbe.org/2yb7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yb7 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2yb7" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clostridium thermocellum~~]]	+	[[Category: Atcc 27405]]
	[[Category: Correia, M A.S]]		[[Category: Correia, M A.S]]
	[[Category: Coutinho, P M]]		[[Category: Coutinho, P M]]

OCA at 22:53, 3 January 2015

OCA — Sat, 03 Jan 2015 22:53:35 GMT

←Older revision		Revision as of 22:53, 3 January 2015
Line 2:		Line 2:
	<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. <br>	+	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YB7 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>
-	<tr~~><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class~~='~~plainlinks~~'~~>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum]</span></td></tr>
-	~~<tr~~><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum]</span></td></tr>	+	</table>
-	<table>	+
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 13:
	A Novel, Noncatalytic Carbohydrate-binding Module Displays Specificity for Galactose-containing Polysaccharides through Calcium-mediated Oligomerization.,Montanier CY, Correia MA, Flint JE, Zhu Y, Basle A, McKee LS, Prates JA, Polizzi SJ, Coutinho PM, Lewis RJ, Henrissat B, Fontes CM, Gilbert HJ J Biol Chem. 2011 Jun 24;286(25):22499-509. Epub 2011 Mar 21. PMID:21454512<ref>PMID:21454512</ref>		A Novel, Noncatalytic Carbohydrate-binding Module Displays Specificity for Galactose-containing Polysaccharides through Calcium-mediated Oligomerization.,Montanier CY, Correia MA, Flint JE, Zhu Y, Basle A, McKee LS, Prates JA, Polizzi SJ, Coutinho PM, Lewis RJ, Henrissat B, Fontes CM, Gilbert HJ J Biol Chem. 2011 Jun 24;286(25):22499-509. Epub 2011 Mar 21. PMID:21454512<ref>PMID:21454512</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 21:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
-	[[Category: Correia, M A.S.]]	+	[[Category: Correia, M A.S]]
-	[[Category: Coutinho, P M.]]	+	[[Category: Coutinho, P M]]
-	[[Category: Flint, J E.]]	+	[[Category: Flint, J E]]
-	[[Category: Fontes, C M.G A.]]	+	[[Category: Fontes, C M.G A]]
-	[[Category: Gilbert, H J.]]	+	[[Category: Gilbert, H J]]
-	[[Category: Henrissat, B.]]	+	[[Category: Henrissat, B]]
-	[[Category: Mckee, L S.]]	+	[[Category: Mckee, L S]]
-	[[Category: Montanier, C Y.]]	+	[[Category: Montanier, C Y]]
-	[[Category: Polizzi, S J.]]	+	[[Category: Polizzi, S J]]
-	[[Category: Prates, J A.M.]]	+	[[Category: Prates, J A.M]]
-	[[Category: Zhu, Y.]]	+	[[Category: Zhu, Y]]
	[[Category: Carbohydrate]]		[[Category: Carbohydrate]]
	[[Category: Carbohydrate binding module]]		[[Category: Carbohydrate binding module]]
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]

OCA at 07:50, 14 May 2014

OCA — Wed, 14 May 2014 07:50:19 GMT

←Older revision		Revision as of 07:50, 14 May 2014
Line 1:		Line 1:
-	[[~~Image:~~2yb7.~~png~~\|~~left~~\|~~200px~~]]	+	==CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose==
		+	<StructureSection load='2yb7' size='340' side='right' caption='[[2yb7]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2yb7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GLA:ALPHA+D-GALACTOSE'>GLA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yfu\|2yfu]], [[2yfz\|2yfz]], [[2yg0\|2yg0]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yb7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yb7 RCSB], [http://www.ebi.ac.uk/pdbsum/2yb7 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The enzymic degradation of plant cell walls plays a central role in the carbon cycle and is of increasing environmental and industrial significance. The catalytic modules of enzymes that catalyze this process are generally appended to noncatalytic carbohydrate-binding modules (CBMs). CBMs potentiate the rate of catalysis by bringing their cognate enzymes into intimate contact with the target substrate. A powerful plant cell wall-degrading system is the Clostridium thermocellum multienzyme complex, termed the "cellulosome." Here, we identify a novel CBM (CtCBM62) within the large C. thermocellum cellulosomal protein Cthe_2193 (defined as CtXyl5A), which establishes a new CBM family. Phylogenetic analysis of CBM62 members indicates that a circular permutation occurred within the family. CtCBM62 binds to d-galactose and l-arabinopyranose in either anomeric configuration. The crystal structures of CtCBM62, in complex with oligosaccharides containing alpha- and beta-galactose residues, show that the ligand-binding site in the beta-sandwich protein is located in the loops that connect the two beta-sheets. Specificity is conferred through numerous interactions with the axial O4 of the target sugars, a feature that distinguishes galactose and arabinose from the other major sugars located in plant cell walls. CtCBM62 displays tighter affinity for multivalent ligands compared with molecules containing single galactose residues, which is associated with precipitation of these complex carbohydrates. These avidity effects, which confer the targeting of polysaccharides, are mediated by calcium-dependent oligomerization of the CBM.

-	<!--	+	A Novel, Noncatalytic Carbohydrate-binding Module Displays Specificity for Galactose-containing Polysaccharides through Calcium-mediated Oligomerization.,Montanier CY, Correia MA, Flint JE, Zhu Y, Basle A, McKee LS, Prates JA, Polizzi SJ, Coutinho PM, Lewis RJ, Henrissat B, Fontes CM, Gilbert HJ J Biol Chem. 2011 Jun 24;286(25):22499-509. Epub 2011 Mar 21. PMID:21454512<ref>PMID:21454512</ref>
-	~~The line below this paragraph,~~ containing ~~"STRUCTURE_2yb7"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display.~~	+
-	-->	+
-	~~{{STRUCTURE_2yb7\| PDB=2yb7 \| SCENE= }}~~	+

-	~~===CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph~~, ~~{{ABSTRACT_PUBMED_21454512}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 21454512 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_21454512}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2yb7]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021454512<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
	[[Category: Correia, M A.S.]]		[[Category: Correia, M A.S.]]

OCA at 04:58, 30 May 2012

OCA — Wed, 30 May 2012 04:58:03 GMT

←Older revision		Revision as of 04:58, 30 May 2012
Line 1:		Line 1:
-	[[Image:2yb7.~~jpg~~\|left\|200px]]	+	[[Image:2yb7.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 9:
	{{STRUCTURE_2yb7\| PDB=2yb7 \| SCENE= }}		{{STRUCTURE_2yb7\| PDB=2yb7 \| SCENE= }}

-	===CBM62 ~~IN COMPLEX WITH~~ 6-~~ALPHA~~-D-~~GALACTOSYL~~-~~MANNOTRIOSE~~===	+	===CBM62 in complex with 6-alpha-D-Galactosyl-mannotriose===


Line 32:		Line 32:
	[[Category: Mckee, L S.]]		[[Category: Mckee, L S.]]
	[[Category: Montanier, C Y.]]		[[Category: Montanier, C Y.]]
-	[[Category: Polizzi, J.]]	+	[[Category: Polizzi, S J.]]
	[[Category: Prates, J A.M.]]		[[Category: Prates, J A.M.]]
	[[Category: Zhu, Y.]]		[[Category: Zhu, Y.]]

OCA at 06:21, 17 August 2011

OCA — Wed, 17 Aug 2011 06:21:08 GMT

←Older revision		Revision as of 06:21, 17 August 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:2yb7.jpg\|left\|200px]]

-	The ~~entry 2yb7~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2yb7", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2yb7\| PDB=2yb7 \| SCENE= }}

-	~~Authors: Montanier, C.Y., Correia, M.A.S., Flint, J.E., Zhu, Y., McKee, L.S., Prates, J.A.M., Polizzi, J., Coutinho, P.M., Henrissat, B., Fontes, C.M.G.A., Gilbert, H.J.~~	+	===CBM62 IN COMPLEX WITH 6-ALPHA-D-GALACTOSYL-MANNOTRIOSE===

-	~~Description: CBM62 in complex with 6~~-~~alpha~~-D-~~Galactosyl~~-~~mannotriose~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21454512}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21454512 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21454512}}
		+
		+	==About this Structure==
		+	[[2yb7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YB7 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021454512</ref><references group="xtra"/>
		+	[[Category: Clostridium thermocellum]]
		+	[[Category: Correia, M A.S.]]
		+	[[Category: Coutinho, P M.]]
		+	[[Category: Flint, J E.]]
		+	[[Category: Fontes, C M.G A.]]
		+	[[Category: Gilbert, H J.]]
		+	[[Category: Henrissat, B.]]
		+	[[Category: Mckee, L S.]]
		+	[[Category: Montanier, C Y.]]
		+	[[Category: Polizzi, J.]]
		+	[[Category: Prates, J A.M.]]
		+	[[Category: Zhu, Y.]]
		+	[[Category: Carbohydrate]]
		+	[[Category: Carbohydrate binding module]]
		+	[[Category: Sugar binding protein]]

OCA: Protected "2yb7" [edit=sysop:move=sysop]

OCA — Wed, 09 Mar 2011 05:56:46 GMT

Protected "2yb7" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:56, 9 March 2011