2yld - Revision history

OCA at 18:45, 20 September 2023

OCA — Wed, 20 Sep 2023 18:45:50 GMT

←Older revision		Revision as of 18:45, 20 September 2023
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	<StructureSection load='2yld' size='340' side='right'caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2yld' size='340' side='right'caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter~~ xylosoxidans~~" yabuuchi and ohyama 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE~~+~~ION~~'>~~SO4~~</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~PCA~~:~~PYROGLUTAMIC~~+~~ACID~~'>~~PCA~~</scene~~></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2yl3\|2yl3]], [[2xlh\|2xlh]], [[2xm0\|2xm0]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2yli\|2yli]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1cgn\|1cgn]], [[2ylg\|2ylg]], [[1e85\|1e85]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[1e83\|1e83]], [[2yl7\|2yl7]], [[2xlw\|2xlw]], [[2xl8\|2xl8]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]]</div></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [https://pdbe.org/2yld PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [https://www.ebi.ac.uk/pdbsum/2yld PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yld ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [https://pdbe.org/2yld PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [https://www.ebi.ac.uk/pdbsum/2yld PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yld ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.	+	[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 27:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter xylosoxidans ~~yabuuchi and ohyama 1971~~]]	+	[[Category: Achromobacter xylosoxidans]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Antonyuk~~, S V~~]]	+	[[Category: Antonyuk SV]]
-	[[Category: Eady~~, R R~~]]	+	[[Category: Eady RR]]
-	[[Category: Hasnain~~, S S~~]]	+	[[Category: Hasnain SS]]
-	[[Category: Rustage, N]]	+	[[Category: Rustage N]]
-	~~[[Category: 4-helix bundle]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Haemoprotein~~]]	+

OCA at 17:29, 15 December 2021

OCA — Wed, 15 Dec 2021 17:29:22 GMT

←Older revision		Revision as of 17:29, 15 December 2021
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	<StructureSection load='2yld' size='340' side='right'caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2yld' size='340' side='right'caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2YLD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xlh\|2xlh]], [[2xm0\|2xm0]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2yli\|2yli]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1cgn\|1cgn]], [[2ylg\|2ylg]], [[1e85\|1e85]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[1e83\|1e83]], [[2yl7\|2yl7]], [[2xlw\|2xlw]], [[2xl8\|2xl8]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2yl3\|2yl3]], [[2xlh\|2xlh]], [[2xm0\|2xm0]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2yli\|2yli]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1cgn\|1cgn]], [[2ylg\|2ylg]], [[1e85\|1e85]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[1e83\|1e83]], [[2yl7\|2yl7]], [[2xlw\|2xlw]], [[2xl8\|2xl8]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [~~http~~://pdbe.org/2yld PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2yld PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2yld ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [https://pdbe.org/2yld PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [https://www.ebi.ac.uk/pdbsum/2yld PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yld ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.	+	[[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 07:41, 11 March 2020

OCA — Wed, 11 Mar 2020 07:41:20 GMT

←Older revision		Revision as of 07:41, 11 March 2020
Line 1:		Line 1:

	==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A==		==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A==
-	<StructureSection load='2yld' size='340' side='right' caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>	+	<StructureSection load='2yld' size='340' side='right'caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLD FirstGlance]. <br>
Line 22:		Line 22:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]		[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
		+	[[Category: Large Structures]]
	[[Category: Antonyuk, S V]]		[[Category: Antonyuk, S V]]
	[[Category: Eady, R R]]		[[Category: Eady, R R]]

OCA at 08:50, 5 August 2016

OCA — Fri, 05 Aug 2016 08:50:31 GMT

←Older revision		Revision as of 08:50, 5 August 2016
Line 1:		Line 1:
		+
	==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A==		==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A==
	<StructureSection load='2yld' size='340' side='right' caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2yld' size='340' side='right' caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Achromobacter_xylosoxidans Achromobacter~~ xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xlh\|2xlh]], [[2xm0\|2xm0]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2yli\|2yli]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1cgn\|1cgn]], [[2ylg\|2ylg]], [[1e85\|1e85]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[1e83\|1e83]], [[2yl7\|2yl7]], [[2xlw\|2xlw]], [[2xl8\|2xl8]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xlh\|2xlh]], [[2xm0\|2xm0]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2yli\|2yli]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1cgn\|1cgn]], [[2ylg\|2ylg]], [[1e85\|1e85]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[1e83\|1e83]], [[2yl7\|2yl7]], [[2xlw\|2xlw]], [[2xl8\|2xl8]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [http://www.ebi.ac.uk/pdbsum/2yld PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [http://pdbe.org/2yld PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [http://www.ebi.ac.uk/pdbsum/2yld PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yld ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2yld" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 25:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter xylosoxidans]]	+	[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
	[[Category: Antonyuk, S V]]		[[Category: Antonyuk, S V]]
	[[Category: Eady, R R]]		[[Category: Eady, R R]]

OCA at 00:55, 25 December 2014

OCA — Thu, 25 Dec 2014 00:55:40 GMT

←Older revision		Revision as of 00:55, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [http://www.ebi.ac.uk/pdbsum/2yld PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [http://www.ebi.ac.uk/pdbsum/2yld PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 16:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]
	== References ==		== References ==
	<references/>		<references/>
Line 21:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Achromobacter xylosoxidans]]		[[Category: Achromobacter xylosoxidans]]
-	[[Category: Antonyuk, S V.]]	+	[[Category: Antonyuk, S V]]
-	[[Category: Eady, R R.]]	+	[[Category: Eady, R R]]
-	[[Category: Hasnain, S S.]]	+	[[Category: Hasnain, S S]]
-	[[Category: Rustage, N.]]	+	[[Category: Rustage, N]]
	[[Category: 4-helix bundle]]		[[Category: 4-helix bundle]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Haemoprotein]]		[[Category: Haemoprotein]]

OCA at 11:56, 29 October 2014

OCA — Wed, 29 Oct 2014 11:56:03 GMT

←Older revision		Revision as of 11:56, 29 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2yld.~~png~~\|~~left~~\|~~200px~~]]	+	==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A==
		+	<StructureSection load='2yld' size='340' side='right' caption='[[2yld]], [[Resolution\|resolution]] 1.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLD FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASC:ASCORBIC+ACID'>ASC</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xlh\|2xlh]], [[2xm0\|2xm0]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2yli\|2yli]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1cgn\|1cgn]], [[2ylg\|2ylg]], [[1e85\|1e85]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[1e83\|1e83]], [[2yl7\|2yl7]], [[2xlw\|2xlw]], [[2xl8\|2xl8]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yld OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yld RCSB], [http://www.ebi.ac.uk/pdbsum/2yld PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Carbon monoxide (CO) is a product of haem metabolism and organisms must evolve strategies to prevent endogenous CO poisoning of haemoproteins. We show that energy costs associated with conformational changes play a key role in preventing irreversible CO binding. AxCYTcp is a member of a family of haem proteins that form stable 5c-NO and 6c-CO complexes but do not form O(2) complexes. Structure of the AxCYTcp-CO complex at 1.25 A resolution shows that CO binds in two conformations moderated by the extent of displacement of the distal residue Leu16 toward the haem 7-propionate. The presence of two CO conformations is confirmed by cryogenic resonance Raman data. The preferred linear Fe-C-O arrangement (170 +/- 8 degrees ) is accompanied by a flip of the propionate from the distal to proximal face of the haem. In the second conformation, the Fe-C-O unit is bent (158 +/- 8 degrees ) with no flip of propionate. The energetic cost of the CO-induced Leu-propionate movements is reflected in a 600 mV (57.9 kJmol(-1)) decrease in haem potential, a value in good agreement with density functional theory calculations. Substitution of Leu by Ala or Gly (structures determined at 1.03 and 1.04 A resolutions) resulted in a haem site that binds CO in the linear mode only and where no significant change in redox potential is observed. Remarkably, these variants were isolated as ferrous 6c-CO complexes, attributable to the observed eight orders of magnitude increase in affinity for CO, including an approximately 10,000-fold decrease in the rate of dissociation. These new findings have wide implications for preventing CO poisoning of gas-binding haem proteins.

-	~~{{STRUCTURE_2yld\| PDB=2yld \| SCENE= }}~~	+	Carbon monoxide poisoning is prevented by the energy costs of conformational changes in gas-binding haemproteins.,Antonyuk SV, Rustage N, Petersen CA, Arnst JL, Heyes DJ, Sharma R, Berry NG, Scrutton NS, Eady RR, Andrew CR, Hasnain SS Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15780-5. Epub 2011 Sep 7. PMID:21900609<ref>PMID:21900609</ref>

-	~~===RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_21900609}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2yld]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA].~~	+	</StructureSection>
-		+
-	==~~See Also==~~	+
-	*[[Cytochrome c\|Cytochrome c]]	+
-		+
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:021900609<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Achromobacter xylosoxidans]]		[[Category: Achromobacter xylosoxidans]]
	[[Category: Antonyuk, S V.]]		[[Category: Antonyuk, S V.]]

OCA at 10:52, 20 October 2012

OCA — Sat, 20 Oct 2012 10:52:13 GMT

←Older revision		Revision as of 10:52, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2yld]] is a 1 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA].	+	[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA].

	==See Also==		==See Also==

OCA at 03:31, 26 July 2012

OCA — Thu, 26 Jul 2012 03:31:22 GMT

←Older revision		Revision as of 03:31, 26 July 2012
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-	[[Image:2yld.~~jpg~~\|left\|200px]]	+	[[Image:2yld.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2yld", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2yld\| PDB=2yld \| SCENE= }}		{{STRUCTURE_2yld\| PDB=2yld \| SCENE= }}

	===RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A===		===RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_21900609}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 21900609 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_21900609}}		{{ABSTRACT_PUBMED_21900609}}

	==About this Structure==		==About this Structure==
-	[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA].	+	[[2yld]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]

	==Reference==		==Reference==

OCA at 06:39, 5 October 2011

OCA — Wed, 05 Oct 2011 06:39:54 GMT

←Older revision		Revision as of 06:39, 5 October 2011
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-	~~'''Unreleased structure'''~~	+	[[Image:2yld.jpg\|left\|200px]]

-	The ~~entry 2yld~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2yld", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2yld\| PDB=2yld \| SCENE= }}

-	~~Authors~~: ~~Antonyuk, S., Rustage, N., Eady, R.R., Hasnain, S.S~~.	+	===RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A===

-	~~Description~~: ~~RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT~~ 1.~~25 A~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21900609}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21900609 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21900609}}
		+
		+	==About this Structure==
		+	[[2yld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLD OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021900609</ref><references group="xtra"/>
		+	[[Category: Achromobacter xylosoxidans]]
		+	[[Category: Antonyuk, S V.]]
		+	[[Category: Eady, R R.]]
		+	[[Category: Hasnain, S S.]]
		+	[[Category: Rustage, N.]]
		+	[[Category: 4-helix bundle]]
		+	[[Category: Electron transport]]
		+	[[Category: Haemoprotein]]

OCA at 05:42, 15 June 2011

OCA — Wed, 15 Jun 2011 05:42:06 GMT

←Older revision		Revision as of 05:42, 15 June 2011
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2yld is ON HOLD	+	The entry 2yld is ON HOLD until Paper Publication

	Authors: Antonyuk, S., Rustage, N., Eady, R.R., Hasnain, S.S.		Authors: Antonyuk, S., Rustage, N., Eady, R.R., Hasnain, S.S.

	Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A		Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A