2yli - Revision history

OCA at 18:45, 20 September 2023

OCA — Wed, 20 Sep 2023 18:45:53 GMT

←Older revision		Revision as of 18:45, 20 September 2023
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	<StructureSection load='2yli' size='340' side='right'caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='2yli' size='340' side='right'caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter~~ xylosoxidans~~" yabuuchi and ohyama 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLI FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HEC:HEME+C'>HEC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~PCA~~:~~PYROGLUTAMIC~~+~~ACID~~'>~~PCA~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [https://pdbe.org/2yli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [https://www.ebi.ac.uk/pdbsum/2yli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yli ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [https://pdbe.org/2yli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [https://www.ebi.ac.uk/pdbsum/2yli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yli ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.	+	[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter xylosoxidans ~~yabuuchi and ohyama 1971~~]]	+	[[Category: Achromobacter xylosoxidans]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Antonyuk~~, S V~~]]	+	[[Category: Antonyuk SV]]
-	[[Category: Eady~~, R R~~]]	+	[[Category: Eady RR]]
-	[[Category: Hasnain~~, S S]]~~	+	[[Category: Hasnain SS]]
-	~~[[Category: 4-helix bundle]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Haemoprotein~~]]	+

OCA at 17:29, 15 December 2021

OCA — Wed, 15 Dec 2021 17:29:24 GMT

←Older revision		Revision as of 17:29, 15 December 2021
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	<StructureSection load='2yli' size='340' side='right'caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='2yli' size='340' side='right'caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2YLI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YLI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [~~http~~://pdbe.org/2yli PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2yli PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2yli ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [https://pdbe.org/2yli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [https://www.ebi.ac.uk/pdbsum/2yli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yli ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.	+	[[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 10:27, 8 January 2020

OCA — Wed, 08 Jan 2020 10:27:56 GMT

←Older revision		Revision as of 10:27, 8 January 2020
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	==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A==		==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A==
-	<StructureSection load='2yli' size='340' side='right' caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>	+	<StructureSection load='2yli' size='340' side='right'caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLI FirstGlance]. <br>
Line 22:		Line 22:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]		[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
		+	[[Category: Large Structures]]
	[[Category: Antonyuk, S V]]		[[Category: Antonyuk, S V]]
	[[Category: Eady, R R]]		[[Category: Eady, R R]]

OCA at 15:08, 4 August 2016

OCA — Thu, 04 Aug 2016 15:08:47 GMT

←Older revision		Revision as of 15:08, 4 August 2016
Line 1:		Line 1:
		+
	==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A==		==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A==
	<StructureSection load='2yli' size='340' side='right' caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='2yli' size='340' side='right' caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Achromobacter_xylosoxidans Achromobacter~~ xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [http://www.ebi.ac.uk/pdbsum/2yli PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [http://pdbe.org/2yli PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [http://www.ebi.ac.uk/pdbsum/2yli PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yli ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2yli" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter xylosoxidans]]	+	[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
	[[Category: Antonyuk, S V]]		[[Category: Antonyuk, S V]]
	[[Category: Eady, R R]]		[[Category: Eady, R R]]

OCA at 16:08, 24 December 2014

OCA — Wed, 24 Dec 2014 16:08:04 GMT

←Older revision		Revision as of 16:08, 24 December 2014
Line 2:		Line 2:
	<StructureSection load='2yli' size='340' side='right' caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='2yli' size='340' side='right' caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. <br>	+	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YLI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</td></tr>
-	<tr~~><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class~~='~~plainlinks~~'~~>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [http://www.ebi.ac.uk/pdbsum/2yli PDBsum]</span></td></tr>
-	~~<tr~~><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [http://www.ebi.ac.uk/pdbsum/2yli PDBsum]</span></td></tr>	+	</table>
-	<table>	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX]] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 15:		Line 16:
	Carbon monoxide poisoning is prevented by the energy costs of conformational changes in gas-binding haemproteins.,Antonyuk SV, Rustage N, Petersen CA, Arnst JL, Heyes DJ, Sharma R, Berry NG, Scrutton NS, Eady RR, Andrew CR, Hasnain SS Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15780-5. Epub 2011 Sep 7. PMID:21900609<ref>PMID:21900609</ref>		Carbon monoxide poisoning is prevented by the energy costs of conformational changes in gas-binding haemproteins.,Antonyuk SV, Rustage N, Petersen CA, Arnst JL, Heyes DJ, Sharma R, Berry NG, Scrutton NS, Eady RR, Andrew CR, Hasnain SS Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15780-5. Epub 2011 Sep 7. PMID:21900609<ref>PMID:21900609</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 22:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Achromobacter xylosoxidans]]		[[Category: Achromobacter xylosoxidans]]
-	[[Category: Antonyuk, S V.]]	+	[[Category: Antonyuk, S V]]
-	[[Category: Eady, R R.]]	+	[[Category: Eady, R R]]
-	[[Category: Hasnain, S S.]]	+	[[Category: Hasnain, S S]]
	[[Category: 4-helix bundle]]		[[Category: 4-helix bundle]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Haemoprotein]]		[[Category: Haemoprotein]]

OCA at 07:39, 14 May 2014

OCA — Wed, 14 May 2014 07:39:41 GMT

←Older revision		Revision as of 07:39, 14 May 2014
Line 1:		Line 1:
-	[[~~Image:~~2yli.~~jpg~~\|~~left~~\|~~200px~~]]	+	==RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A==
		+	<StructureSection load='2yli' size='340' side='right' caption='[[2yli]], [[Resolution\|resolution]] 1.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yl3\|2yl3]], [[2xm0\|2xm0]], [[2xlh\|2xlh]], [[1cgo\|1cgo]], [[2ykz\|2ykz]], [[2xm4\|2xm4]], [[1e86\|1e86]], [[2xl6\|2xl6]], [[2yl0\|2yl0]], [[1e85\|1e85]], [[1cgn\|1cgn]], [[2xlm\|2xlm]], [[2yl1\|2yl1]], [[2xld\|2xld]], [[2xle\|2xle]], [[2yl7\|2yl7]], [[1e83\|1e83]], [[2xl8\|2xl8]], [[2xlw\|2xlw]], [[1e84\|1e84]], [[2xlv\|2xlv]], [[2xlo\|2xlo]], [[2ylg\|2ylg]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yli OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yli RCSB], [http://www.ebi.ac.uk/pdbsum/2yli PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Carbon monoxide (CO) is a product of haem metabolism and organisms must evolve strategies to prevent endogenous CO poisoning of haemoproteins. We show that energy costs associated with conformational changes play a key role in preventing irreversible CO binding. AxCYTcp is a member of a family of haem proteins that form stable 5c-NO and 6c-CO complexes but do not form O(2) complexes. Structure of the AxCYTcp-CO complex at 1.25 A resolution shows that CO binds in two conformations moderated by the extent of displacement of the distal residue Leu16 toward the haem 7-propionate. The presence of two CO conformations is confirmed by cryogenic resonance Raman data. The preferred linear Fe-C-O arrangement (170 +/- 8 degrees ) is accompanied by a flip of the propionate from the distal to proximal face of the haem. In the second conformation, the Fe-C-O unit is bent (158 +/- 8 degrees ) with no flip of propionate. The energetic cost of the CO-induced Leu-propionate movements is reflected in a 600 mV (57.9 kJmol(-1)) decrease in haem potential, a value in good agreement with density functional theory calculations. Substitution of Leu by Ala or Gly (structures determined at 1.03 and 1.04 A resolutions) resulted in a haem site that binds CO in the linear mode only and where no significant change in redox potential is observed. Remarkably, these variants were isolated as ferrous 6c-CO complexes, attributable to the observed eight orders of magnitude increase in affinity for CO, including an approximately 10,000-fold decrease in the rate of dissociation. These new findings have wide implications for preventing CO poisoning of gas-binding haem proteins.

-	<!--	+	Carbon monoxide poisoning is prevented by the energy costs of conformational changes in gas-binding haemproteins.,Antonyuk SV, Rustage N, Petersen CA, Arnst JL, Heyes DJ, Sharma R, Berry NG, Scrutton NS, Eady RR, Andrew CR, Hasnain SS Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15780-5. Epub 2011 Sep 7. PMID:21900609<ref>PMID:21900609</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_2yli"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_2yli\| PDB=2yli \| SCENE= }}~~	+

-	~~===RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph~~, ~~{{ABSTRACT_PUBMED_21900609}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 21900609 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_21900609}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2yli]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021900609<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Achromobacter xylosoxidans]]		[[Category: Achromobacter xylosoxidans]]
	[[Category: Antonyuk, S V.]]		[[Category: Antonyuk, S V.]]

OCA at 07:49, 18 April 2012

OCA — Wed, 18 Apr 2012 07:49:14 GMT

←Older revision		Revision as of 07:49, 18 April 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:2yli.jpg\|left\|200px]]

-	The ~~entry 2yli~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2yli", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2yli\| PDB=2yli \| SCENE= }}

-	~~Authors: Antonyuk, S., Eady, R.R., Hasnain, S.S~~.	+	===RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A===

-	~~Description~~: ~~RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT~~ 1.~~45 A~~	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21900609}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21900609 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21900609}}
		+
		+	==About this Structure==
		+	[[2yli]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YLI OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021900609</ref><references group="xtra"/>
		+	[[Category: Achromobacter xylosoxidans]]
		+	[[Category: Antonyuk, S V.]]
		+	[[Category: Eady, R R.]]
		+	[[Category: Hasnain, S S.]]
		+	[[Category: 4-helix bundle]]
		+	[[Category: Electron transport]]
		+	[[Category: Haemoprotein]]

OCA at 05:42, 15 June 2011

OCA — Wed, 15 Jun 2011 05:42:11 GMT

←Older revision		Revision as of 05:42, 15 June 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2yli is ON HOLD	+	The entry 2yli is ON HOLD until Paper Publication

	Authors: Antonyuk, S., Eady, R.R., Hasnain, S.S.		Authors: Antonyuk, S., Eady, R.R., Hasnain, S.S.

	Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A		Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A

OCA: Protected "2yli" [edit=sysop:move=sysop]

OCA — Wed, 08 Jun 2011 04:41:21 GMT

Protected "2yli" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:41, 8 June 2011

OCA: New page: '''Unreleased structure''' The entry 2yli is ON HOLD Authors: Antonyuk, S., Eady, R.R., Hasnain, S.S. Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS I...

OCA — Wed, 08 Jun 2011 04:41:20 GMT

New page: '''Unreleased structure''' The entry 2yli is ON HOLD Authors: Antonyuk, S., Eady, R.R., Hasnain, S.S. Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS I...

New page

'''Unreleased structure'''

The entry 2yli is ON HOLD

Authors: Antonyuk, S., Eady, R.R., Hasnain, S.S.

Description: RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A