2ywr - Revision history

OCA at 09:08, 25 October 2023

OCA — Wed, 25 Oct 2023 09:08:58 GMT

←Older revision		Revision as of 09:08, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2ywr' size='340' side='right'caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>		<StructureSection load='2ywr' size='340' side='right'caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ywr]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex~~ aeolicus~~" huber and stetter 2001~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2YWR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ywr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YWR FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.77Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [https://pdbe.org/2ywr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [https://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywr ProSAT], [https://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [~~http~~://pdbe.org/2ywr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywr ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O67023_AQUAE O67023_AQUAE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aquifex aeolicus ~~huber and stetter 2001~~]]	+	[[Category: Aquifex aeolicus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Phosphoribosylglycinamide formyltransferase]]~~	+	[[Category: Baba S]]
-	[[Category: Baba, S]]	+	[[Category: Kanagawa M]]
-	[[Category: Kanagawa, M]]	+	[[Category: Kawai G]]
-	[[Category: Kawai, G]]	+	[[Category: Kuramitsu S]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Sampei G]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Yokoyama S]]
-	[[Category: Sampei, G]]	+
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Rossmann fold]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 13:06, 22 July 2020

OCA — Wed, 22 Jul 2020 13:06:21 GMT

←Older revision		Revision as of 13:06, 22 July 2020
Line 1:		Line 1:

	==Crystal structure of GAR transformylase from Aquifex aeolicus==		==Crystal structure of GAR transformylase from Aquifex aeolicus==
-	<StructureSection load='2ywr' size='340' side='right' caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>	+	<StructureSection load='2ywr' size='340' side='right'caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ywr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2YWR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ywr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YWR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://pdbe.org/2ywr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywr ProSAT], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://pdbe.org/2ywr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywr ProSAT], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Aquifex aeolicus huber and stetter 2001]]		[[Category: Aquifex aeolicus huber and stetter 2001]]
		+	[[Category: Large Structures]]
	[[Category: Phosphoribosylglycinamide formyltransferase]]		[[Category: Phosphoribosylglycinamide formyltransferase]]
	[[Category: Baba, S]]		[[Category: Baba, S]]

OCA at 09:33, 17 October 2018

OCA — Wed, 17 Oct 2018 09:33:58 GMT

←Older revision		Revision as of 09:33, 17 October 2018
Line 1:		Line 1:
		+
	==Crystal structure of GAR transformylase from Aquifex aeolicus==		==Crystal structure of GAR transformylase from Aquifex aeolicus==
	<StructureSection load='2ywr' size='340' side='right' caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>		<StructureSection load='2ywr' size='340' side='right' caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://pdbe.org/2ywr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://pdbe.org/2ywr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ywr ProSAT], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywr_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywr_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 11:56, 7 February 2016

OCA — Sun, 07 Feb 2016 11:56:07 GMT

←Older revision		Revision as of 11:56, 7 February 2016
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://pdbe.org/2ywr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ywr ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2ywr" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:42, 20 January 2015

OCA — Tue, 20 Jan 2015 08:42:07 GMT

←Older revision		Revision as of 08:42, 20 January 2015
Line 32:		Line 32:
	[[Category: Aquifex aeolicus huber and stetter 2001]]		[[Category: Aquifex aeolicus huber and stetter 2001]]
	[[Category: Phosphoribosylglycinamide formyltransferase]]		[[Category: Phosphoribosylglycinamide formyltransferase]]
-	[[Category: Baba, S.]]	+	[[Category: Baba, S]]
-	[[Category: Kanagawa, M.]]	+	[[Category: Kanagawa, M]]
-	[[Category: Kawai, G.]]	+	[[Category: Kawai, G]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Sampei, G.]]	+	[[Category: Sampei, G]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rossmann fold]]		[[Category: Rossmann fold]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 06:16, 10 October 2014

OCA — Fri, 10 Oct 2014 06:16:57 GMT

←Older revision		Revision as of 06:16, 10 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2ywr~~\| ~~PDB~~=2ywr \| ~~SCENE~~= }}	+	==Crystal structure of GAR transformylase from Aquifex aeolicus==
-	===~~Crystal~~ structure of ~~GAR transformylase~~ from ~~Aquifex aeolicus~~===	+	<StructureSection load='2ywr' size='340' side='right' caption='[[2ywr]], [[Resolution\|resolution]] 1.77Å' scene=''>
-	~~{{ABSTRACT_PUBMED_24108189}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2ywr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YWR FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylglycinamide_formyltransferase Phosphoribosylglycinamide formyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.2 2.1.2.2] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ywr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ywr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ywr RCSB], [http://www.ebi.ac.uk/pdbsum/2ywr PDBsum], [http://www.topsan.org/Proteins/RSGI/2ywr TOPSAN]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/2ywr_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of glycinamide ribonucleotide transformylases (PurNs) from Aquifex aeolicus (Aa), Geobacillus kaustophilus (Gk) and Symbiobacterium toebii (St), and of formyltetrahydrofolate hydrolase (PurU) from Thermus thermophilus (Tt) were determined. The monomer structures of the determined PurN and PurU were very similar to the known structure of PurN, but oligomeric states were different; AaPurN and StPurN formed dimers, GkPurN formed monomer and PurU formed tetramer in the crystals. PurU had a regulatory ACT domain in its N-terminal side. So far several structures of PurUs have been determined, yet, the mechanisms of the catalysis and the regulation of PurU have not been elucidated. We, therefore, modelled ligand-bound structures of PurN and PurU, and performed molecular dynamics simulations to elucidate the reaction mechanisms. The evolutionary relationship of the two enzymes is discussed based on the comparisons of the structures and the catalytic mechanisms.

-	~~==About this Structure==~~	+	Structures and reaction mechanisms of the two related enzymes, PurN and PurU.,Sampei G, Kanagawa M, Baba S, Shimasaki T, Taka H, Mitsui S, Fujiwara S, Yanagida Y, Kusano M, Suzuki S, Terao K, Kawai H, Fukai Y, Nakagawa N, Ebihara A, Kuramitsu S, Yokoyama S, Kawai G J Biochem. 2013 Dec;154(6):569-79. doi: 10.1093/jb/mvt090. Epub 2013 Oct 9. PMID:24108189<ref>PMID:24108189</ref>
-	~~[[2ywr]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2YWR OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:024108189</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Aquifex aeolicus huber and stetter 2001]]		[[Category: Aquifex aeolicus huber and stetter 2001]]
	[[Category: Phosphoribosylglycinamide formyltransferase]]		[[Category: Phosphoribosylglycinamide formyltransferase]]

OCA at 07:11, 15 January 2014

OCA — Wed, 15 Jan 2014 07:11:03 GMT

←Older revision		Revision as of 07:11, 15 January 2014
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-	[[Image:2ywr.png\|left\|200px]]
-
	{{STRUCTURE_2ywr\| PDB=2ywr \| SCENE= }}		{{STRUCTURE_2ywr\| PDB=2ywr \| SCENE= }}
-
	===Crystal structure of GAR transformylase from Aquifex aeolicus===		===Crystal structure of GAR transformylase from Aquifex aeolicus===
		+	{{ABSTRACT_PUBMED_24108189}}

		+	==About this Structure==
		+	[[2ywr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA].

-	==~~About this Structure~~==	+	==Reference==
-	~~[[2ywr]] is a 1 chain structure with sequence from [http~~://~~en.wikipedia.org~~/~~wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA].~~	+	<ref group="xtra">PMID:024108189</ref><references group="xtra"/><references/>
-	[[Category: Aquifex aeolicus]]	+	[[Category: Aquifex aeolicus huber and stetter 2001]]
	[[Category: Phosphoribosylglycinamide formyltransferase]]		[[Category: Phosphoribosylglycinamide formyltransferase]]
	[[Category: Baba, S.]]		[[Category: Baba, S.]]

OCA: Protected "2ywr" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:08:49 GMT

Protected "2ywr" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:08, 7 January 2013

OCA at 21:08, 7 January 2013

OCA — Mon, 07 Jan 2013 21:08:47 GMT

←Older revision		Revision as of 21:08, 7 January 2013
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-	{{Seed}}
	[[Image:2ywr.png\|left\|200px]]		[[Image:2ywr.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2ywr", creates the "Structure Box" on the page.
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	{{STRUCTURE_2ywr\| PDB=2ywr \| SCENE= }}		{{STRUCTURE_2ywr\| PDB=2ywr \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2YWR~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA].	+	[[2ywr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA].
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Phosphoribosylglycinamide formyltransferase]]		[[Category: Phosphoribosylglycinamide formyltransferase]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:44:44 2008''

OCA at 13:44, 16 November 2008

OCA — Sun, 16 Nov 2008 13:44:46 GMT

←Older revision		Revision as of 13:44, 16 November 2008
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	==About this Structure==		==About this Structure==
-	2YWR is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA].	+	2YWR is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YWR OCA].
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Phosphoribosylglycinamide formyltransferase]]		[[Category: Phosphoribosylglycinamide formyltransferase]]
-	[[Category: Single protein]]
	[[Category: Baba, S.]]		[[Category: Baba, S.]]
	[[Category: Kanagawa, M.]]		[[Category: Kanagawa, M.]]
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	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 00~~:48:04 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:44:44 2008''