2yxs - Revision history

OCA at 09:10, 25 October 2023

OCA — Wed, 25 Oct 2023 09:10:09 GMT

←Older revision		Revision as of 09:10, 25 October 2023
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	<StructureSection load='2yxs' size='340' side='right'caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>		<StructureSection load='2yxs' size='340' side='right'caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2YXS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YXS FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BGC:BETA~~-~~D-GLUCOSE'>BGC</scene>~~, ~~<scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.13Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PRD_900004:beta-lactose'>PRD_900004</scene></td></tr>
-	<~~tr id~~='~~related~~'><~~td class="sblockLbl"~~><~~b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat">[[2yv8\|2yv8]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [https://pdbe.org/2yxs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [https://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxs ProSAT], [https://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [~~http~~://pdbe.org/2yxs PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxs ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/LEG8_HUMAN LEG8_HUMAN] Lectin with a marked preference for 3'-O-sialylated and 3'-O-sulfated glycans.<ref>PMID:21288902</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 23:
	==See Also==		==See Also==
	*[[Galectin 3D structures\|Galectin 3D structures]]		*[[Galectin 3D structures\|Galectin 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kishishita, S]]	+	[[Category: Kishishita S]]
-	[[Category: Murayama, K]]	+	[[Category: Murayama K]]
-	[[Category: Nishino, A]]	+	[[Category: Nishino A]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Shirouzu M]]
-	[[Category: Shirouzu, M]]	+	[[Category: Terada T]]
-	[[Category: Terada, T]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: Galectin]]~~	+
-	~~[[Category: Lactose]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Sugar binding protein]]~~	+
-	~~[[Category: Suger-binding~~]]	+

OCA at 09:41, 9 September 2020

OCA — Wed, 09 Sep 2020 09:41:33 GMT

←Older revision		Revision as of 09:41, 9 September 2020
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-	==Crystal ~~Sturcture~~ of N-terminal domain of human galectin-8 with D-lactose==	+	==Crystal Structure of N-terminal domain of human galectin-8 with D-lactose==
	<StructureSection load='2yxs' size='340' side='right'caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>		<StructureSection load='2yxs' size='340' side='right'caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YXS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YXS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=~~LAT~~:BETA-~~LACTOSE~~'>~~LAT~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>

OCA at 13:07, 22 July 2020

OCA — Wed, 22 Jul 2020 13:07:30 GMT

←Older revision		Revision as of 13:07, 22 July 2020
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	==Crystal Sturcture of N-terminal domain of human galectin-8 with D-lactose==		==Crystal Sturcture of N-terminal domain of human galectin-8 with D-lactose==
-	<StructureSection load='2yxs' size='340' side='right' caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>	+	<StructureSection load='2yxs' size='340' side='right'caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2YXS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YXS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://pdbe.org/2yxs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxs ProSAT], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://pdbe.org/2yxs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxs ProSAT], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:

	==See Also==		==See Also==
-	*[[Galectin\|Galectin]]	+	*[[Galectin 3D structures\|Galectin 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Kishishita, S]]		[[Category: Kishishita, S]]
	[[Category: Murayama, K]]		[[Category: Murayama, K]]

OCA at 09:15, 17 October 2018

OCA — Wed, 17 Oct 2018 09:15:50 GMT

←Older revision		Revision as of 09:15, 17 October 2018
Line 1:		Line 1:
		+
	==Crystal Sturcture of N-terminal domain of human galectin-8 with D-lactose==		==Crystal Sturcture of N-terminal domain of human galectin-8 with D-lactose==
	<StructureSection load='2yxs' size='340' side='right' caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>		<StructureSection load='2yxs' size='340' side='right' caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://pdbe.org/2yxs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://pdbe.org/2yxs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yxs ProSAT], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yxs_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yxs_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:57, 8 February 2016

OCA — Mon, 08 Feb 2016 16:57:00 GMT

←Older revision		Revision as of 16:57, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='2yxs' size='340' side='right' caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>		<StructureSection load='2yxs' size='340' side='right' caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YXS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YXS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://pdbe.org/2yxs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yxs ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Homo sapiens~~]]	+	[[Category: Human]]
	[[Category: Kishishita, S]]		[[Category: Kishishita, S]]
	[[Category: Murayama, K]]		[[Category: Murayama, K]]

OCA at 08:18, 20 January 2015

OCA — Tue, 20 Jan 2015 08:18:12 GMT

←Older revision		Revision as of 08:18, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YXS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YXS FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Kishishita, S.]]	+	[[Category: Kishishita, S]]
-	[[Category: Murayama, K.]]	+	[[Category: Murayama, K]]
-	[[Category: Nishino, A.]]	+	[[Category: Nishino, A]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Terada, T.]]	+	[[Category: Terada, T]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Galectin]]		[[Category: Galectin]]
	[[Category: Lactose]]		[[Category: Lactose]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]
	[[Category: Suger-binding]]		[[Category: Suger-binding]]

OCA at 06:52, 29 September 2014

OCA — Mon, 29 Sep 2014 06:52:05 GMT

←Older revision		Revision as of 06:52, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2yxs.png\|left\|200px]]~~	+	==Crystal Sturcture of N-terminal domain of human galectin-8 with D-lactose==
-		+	<StructureSection load='2yxs' size='340' side='right' caption='[[2yxs]], [[Resolution\|resolution]] 2.13Å' scene=''>
-	~~{{STRUCTURE_2yxs\| PDB=2yxs \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YXS FirstGlance]. <br>
-	===Crystal Sturcture of N-terminal domain of human galectin-8 with D-lactose===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2yv8\|2yv8]]</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yxs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yxs RCSB], [http://www.ebi.ac.uk/pdbsum/2yxs PDBsum], [http://www.topsan.org/Proteins/RSGI/2yxs TOPSAN]</span></td></tr>
-	[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yxs_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Galectin\|Galectin]]		*[[Galectin\|Galectin]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Kishishita, S.]]		[[Category: Kishishita, S.]]

OCA: Protected "2yxs" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 10:49:43 GMT

Protected "2yxs" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:49, 20 October 2012

OCA at 10:49, 20 October 2012

OCA — Sat, 20 Oct 2012 10:49:41 GMT

←Older revision		Revision as of 10:49, 20 October 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2yxs.png\|left\|200px]]		[[Image:2yxs.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2yxs", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2yxs\| PDB=2yxs \| SCENE= }}		{{STRUCTURE_2yxs\| PDB=2yxs \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2YXS~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA].	+	[[2yxs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA].
		+
		+	==See Also==
		+	*[[Galectin\|Galectin]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Kishishita, S.]]		[[Category: Kishishita, S.]]
Line 32:		Line 28:
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]
	[[Category: Suger-binding]]		[[Category: Suger-binding]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:22:12 2008''

OCA at 13:22, 16 November 2008

OCA — Sun, 16 Nov 2008 13:22:19 GMT

←Older revision		Revision as of 13:22, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2YXS is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA].	+	2YXS is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YXS OCA].
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Single protein]]
	[[Category: Kishishita, S.]]		[[Category: Kishishita, S.]]
	[[Category: Murayama, K.]]		[[Category: Murayama, K.]]
Line 34:		Line 33:
	[[Category: Suger-binding]]		[[Category: Suger-binding]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 00~~:13:31 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:22:12 2008''