2yy6 - Revision history

OCA at 09:10, 25 October 2023

OCA — Wed, 25 Oct 2023 09:10:54 GMT

←Older revision		Revision as of 09:10, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2yy6' size='340' side='right'caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2yy6' size='340' side='right'caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aquae Aquae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [https://pdbe.org/2yy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yy6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [~~http~~://pdbe.org/2yy6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2yy6 ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/GPH_AQUAE GPH_AQUAE]] Specifically catalyzes the dephosphorylation of 2-phosphoglycolate (By similarity).[HAMAP-Rule:MF_00495]	+	[https://www.uniprot.org/uniprot/GPH_AQUAE GPH_AQUAE] Specifically catalyzes the dephosphorylation of 2-phosphoglycolate (By similarity).[HAMAP-Rule:MF_00495]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aquae~~]]	+	[[Category: Aquifex aeolicus VF5]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Phosphoglycolate phosphatase]]~~	+	[[Category: Kumarevel TS]]
-	[[Category: Kumarevel~~, T S~~]]	+	[[Category: Kuramitsu S]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Tanaka T]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Yokoyama S]]
-	[[Category: Tanaka, T]]	+
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 13:08, 22 July 2020

OCA — Wed, 22 Jul 2020 13:08:22 GMT

←Older revision		Revision as of 13:08, 22 July 2020
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	==Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5==		==Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5==
-	<StructureSection load='2yy6' size='340' side='right' caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='2yy6' size='340' side='right'caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://pdbe.org/2yy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yy6 ProSAT], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://pdbe.org/2yy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yy6 ProSAT], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Aquae]]		[[Category: Aquae]]
		+	[[Category: Large Structures]]
	[[Category: Phosphoglycolate phosphatase]]		[[Category: Phosphoglycolate phosphatase]]
	[[Category: Kumarevel, T S]]		[[Category: Kumarevel, T S]]

OCA at 08:48, 17 October 2018

OCA — Wed, 17 Oct 2018 08:48:58 GMT

←Older revision		Revision as of 08:48, 17 October 2018
Line 1:		Line 1:
		+
	==Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5==		==Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5==
	<StructureSection load='2yy6' size='340' side='right' caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2yy6' size='340' side='right' caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://pdbe.org/2yy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://pdbe.org/2yy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2yy6 ProSAT], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yy6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yy6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 02:06, 9 February 2016

OCA — Tue, 09 Feb 2016 02:06:56 GMT

←Older revision		Revision as of 02:06, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='2yy6' size='340' side='right' caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2yy6' size='340' side='right' caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Aquifex_aeolicus Aquifex aeolicus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquae Aquae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://pdbe.org/2yy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yy6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aquifex aeolicus~~]]	+	[[Category: Aquae]]
	[[Category: Phosphoglycolate phosphatase]]		[[Category: Phosphoglycolate phosphatase]]
	[[Category: Kumarevel, T S]]		[[Category: Kumarevel, T S]]

OCA at 03:41, 25 December 2014

OCA — Thu, 25 Dec 2014 03:41:01 GMT

←Older revision		Revision as of 03:41, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GPH_AQUAE GPH_AQUAE]] Specifically catalyzes the dephosphorylation of 2-phosphoglycolate (By similarity).[HAMAP-Rule:MF_00495]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Phosphoglycolate phosphatase]]		[[Category: Phosphoglycolate phosphatase]]
-	[[Category: Kumarevel, T S.]]	+	[[Category: Kumarevel, T S]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tanaka, T.]]	+	[[Category: Tanaka, T]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Phosphoglycolate phosphatase]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 04:45, 2 October 2014

OCA — Thu, 02 Oct 2014 04:45:41 GMT

←Older revision		Revision as of 04:45, 2 October 2014
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-	~~[[Image:2yy6.png\|left\|200px]]~~	+	==Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5==
-		+	<StructureSection load='2yy6' size='340' side='right' caption='[[2yy6]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~{{STRUCTURE_2yy6\| PDB=2yy6 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YY6 FirstGlance]. <br>
-	===Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2yy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2yy6 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yy6 TOPSAN]</span></td></tr>
-	[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yy6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Phosphoglycolate phosphatase]]		[[Category: Phosphoglycolate phosphatase]]

OCA: Protected "2yy6" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 19:12:04 GMT

Protected "2yy6" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:12, 7 January 2013

OCA at 19:12, 7 January 2013

OCA — Mon, 07 Jan 2013 19:12:01 GMT

←Older revision		Revision as of 19:12, 7 January 2013
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-	{{Seed}}
	[[Image:2yy6.png\|left\|200px]]		[[Image:2yy6.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2yy6", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
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	{{STRUCTURE_2yy6\| PDB=2yy6 \| SCENE= }}		{{STRUCTURE_2yy6\| PDB=2yy6 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2YY6~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA].	+	[[2yy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA].
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Phosphoglycolate phosphatase]]		[[Category: Phosphoglycolate phosphatase]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:55:55 2008''

OCA at 09:55, 16 November 2008

OCA — Sun, 16 Nov 2008 09:55:57 GMT

←Older revision		Revision as of 09:55, 16 November 2008
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	==About this Structure==		==About this Structure==
-	2YY6 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA].	+	2YY6 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY6 OCA].
	[[Category: Aquifex aeolicus]]		[[Category: Aquifex aeolicus]]
	[[Category: Phosphoglycolate phosphatase]]		[[Category: Phosphoglycolate phosphatase]]
-	[[Category: Single protein]]
	[[Category: Kumarevel, T S.]]		[[Category: Kumarevel, T S.]]
	[[Category: Kuramitsu, S.]]		[[Category: Kuramitsu, S.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 18~~:21:59 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:55:55 2008''

OCA at 15:22, 28 September 2008

OCA — Sun, 28 Sep 2008 15:22:07 GMT

←Older revision		Revision as of 15:22, 28 September 2008
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-	[[Image:2yy6.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2yy6.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2yy6\| PDB=2yy6 \| SCENE= }}		{{STRUCTURE_2yy6\| PDB=2yy6 \| SCENE= }}

-	~~'''~~Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5~~'''~~	+	===Crystal Structure of the phosphoglycolate phosphatase from Aquifex aeolicus VF5===


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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~May 4 19~~:41:03 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 18:21:59 2008''