2z0i - Revision history

OCA at 13:17, 1 November 2023

OCA — Wed, 01 Nov 2023 13:17:41 GMT

←Older revision		Revision as of 13:17, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2z0i' size='340' side='right'caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='2z0i' size='340' side='right'caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [~~http~~://pdbe.org/2z0i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [https://pdbe.org/2z0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [https://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [https://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/HEM2_MOUSE HEM2_MOUSE] Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lk3 transgenic mice]]~~	+	[[Category: Mus musculus]]
-	~~[[Category: Porphobilinogen synthase~~]]	+	[[Category: Kawazoe M]]
-	[[Category: Kawazoe, M]]	+	[[Category: Kishishita S]]
-	[[Category: Kishishita, S]]	+	[[Category: Murayama K]]
-	[[Category: Murayama, K]]	+	[[Category: Shirouzu M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Takemoto C]]
-	[[Category: Shirouzu, M]]	+	[[Category: Terada T]]
-	[[Category: Takemoto, C]]	+	[[Category: Wang H]]
-	[[Category: Terada, T]]	+	[[Category: Xie Y]]
-	[[Category: Wang, H]]	+	[[Category: Yokoyama S]]
-	[[Category: Xie, Y]]	+
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: Dehydratase]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Tetrapyrrole biosynthesis~~]]	+

OCA at 11:54, 29 July 2020

OCA — Wed, 29 Jul 2020 11:54:58 GMT

←Older revision		Revision as of 11:54, 29 July 2020
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	==Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus==		==Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus==
-	<StructureSection load='2z0i' size='340' side='right' caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>	+	<StructureSection load='2z0i' size='340' side='right'caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://pdbe.org/2z0i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://pdbe.org/2z0i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lk3 transgenic mice]]		[[Category: Lk3 transgenic mice]]
	[[Category: Porphobilinogen synthase]]		[[Category: Porphobilinogen synthase]]

OCA at 09:36, 17 October 2018

OCA — Wed, 17 Oct 2018 09:36:03 GMT

←Older revision		Revision as of 09:36, 17 October 2018
Line 1:		Line 1:
		+
	==Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus==		==Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus==
	<StructureSection load='2z0i' size='340' side='right' caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='2z0i' size='340' side='right' caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://pdbe.org/2z0i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://pdbe.org/2z0i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z0i ProSAT], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z0i_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z0i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 15:47, 8 February 2016

OCA — Mon, 08 Feb 2016 15:47:28 GMT

←Older revision		Revision as of 15:47, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='2z0i' size='340' side='right' caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='2z0i' size='340' side='right' caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mus_musculus Mus musculus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://pdbe.org/2z0i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z0i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mus musculus~~]]	+	[[Category: Lk3 transgenic mice]]
	[[Category: Porphobilinogen synthase]]		[[Category: Porphobilinogen synthase]]
	[[Category: Kawazoe, M]]		[[Category: Kawazoe, M]]

OCA at 11:52, 20 January 2015

OCA — Tue, 20 Jan 2015 11:52:15 GMT

←Older revision		Revision as of 11:52, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Porphobilinogen synthase]]		[[Category: Porphobilinogen synthase]]
-	[[Category: Kawazoe, M.]]	+	[[Category: Kawazoe, M]]
-	[[Category: Kishishita, S.]]	+	[[Category: Kishishita, S]]
-	[[Category: Murayama, K.]]	+	[[Category: Murayama, K]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Takemoto, C.]]	+	[[Category: Takemoto, C]]
-	[[Category: Terada, T.]]	+	[[Category: Terada, T]]
-	[[Category: Wang, H.]]	+	[[Category: Wang, H]]
-	[[Category: Xie, Y.]]	+	[[Category: Xie, Y]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Dehydratase]]		[[Category: Dehydratase]]
	[[Category: Lyase]]		[[Category: Lyase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Tetrapyrrole biosynthesis]]		[[Category: Tetrapyrrole biosynthesis]]

OCA at 05:41, 2 October 2014

OCA — Thu, 02 Oct 2014 05:41:09 GMT

←Older revision		Revision as of 05:41, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:2z0i.png\|left\|200px]]~~	+	==Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus==
-		+	<StructureSection load='2z0i' size='340' side='right' caption='[[2z0i]], [[Resolution\|resolution]] 3.20Å' scene=''>
-	~~{{STRUCTURE_2z0i\| PDB=2z0i \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z0I FirstGlance]. <br>
-	===Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Porphobilinogen_synthase Porphobilinogen synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.24 4.2.1.24] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z0i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z0i RCSB], [http://www.ebi.ac.uk/pdbsum/2z0i PDBsum], [http://www.topsan.org/Proteins/RSGI/2z0i TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z0/2z0i_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Porphobilinogen synthase\|Porphobilinogen synthase]]		*[[Porphobilinogen synthase\|Porphobilinogen synthase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Porphobilinogen synthase]]		[[Category: Porphobilinogen synthase]]

OCA: Protected "2z0i" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 20:31:50 GMT

Protected "2z0i" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:31, 7 January 2013

OCA at 20:31, 7 January 2013

OCA — Mon, 07 Jan 2013 20:31:48 GMT

←Older revision		Revision as of 20:31, 7 January 2013
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-	{{Seed}}
	[[Image:2z0i.png\|left\|200px]]		[[Image:2z0i.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2z0i", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2z0i\| PDB=2z0i \| SCENE= }}		{{STRUCTURE_2z0i\| PDB=2z0i \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2Z0I~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA].	+	[[2z0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA].
		+
		+	==See Also==
		+	*[[Porphobilinogen synthase\|Porphobilinogen synthase]]
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Porphobilinogen synthase]]		[[Category: Porphobilinogen synthase]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Tetrapyrrole biosynthesis]]		[[Category: Tetrapyrrole biosynthesis]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:42:51 2008''

OCA at 12:42, 16 November 2008

OCA — Sun, 16 Nov 2008 12:42:55 GMT

←Older revision		Revision as of 12:42, 16 November 2008
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	==About this Structure==		==About this Structure==
-	2Z0I is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA].	+	2Z0I is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z0I OCA].
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Porphobilinogen synthase]]		[[Category: Porphobilinogen synthase]]
-	[[Category: Single protein]]
	[[Category: Kawazoe, M.]]		[[Category: Kawazoe, M.]]
	[[Category: Kishishita, S.]]		[[Category: Kishishita, S.]]
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	[[Category: Tetrapyrrole biosynthesis]]		[[Category: Tetrapyrrole biosynthesis]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 22~~:00:30 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:42:51 2008''

OCA at 19:00, 28 September 2008

OCA — Sun, 28 Sep 2008 19:00:32 GMT

←Older revision		Revision as of 19:00, 28 September 2008
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-	[[Image:2z0i.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2z0i.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2z0i\| PDB=2z0i \| SCENE= }}		{{STRUCTURE_2z0i\| PDB=2z0i \| SCENE= }}

-	~~'''~~Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus~~'''~~	+	===Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus===


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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Tetrapyrrole biosynthesis]]		[[Category: Tetrapyrrole biosynthesis]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed May 14 11:~~28:21 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:00:30 2008''