2z8z - Revision history

OCA at 13:26, 1 November 2023

OCA — Wed, 01 Nov 2023 13:26:49 GMT

←Older revision		Revision as of 13:26, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2z8z' size='340' side='right'caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2z8z' size='340' side='right'caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp.~~_mis38~~ Pseudomonas sp. ~~mis38~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._MIS38 Pseudomonas sp. MIS38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2z8x\|2z8x]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [https://pdbe.org/2z8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [https://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [https://pdbe.org/2z8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [https://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9RBY1_9PSED Q9RBY1_9PSED]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Pseudomonas sp. ~~mis38]]~~	+	[[Category: Pseudomonas sp. MIS38]]
-	~~[[Category: Triacylglycerol lipase~~]]	+	[[Category: Angkawidjaja C]]
-	[[Category: Angkawidjaja, C]]	+	[[Category: Kanaya S]]
-	[[Category: Kanaya, S]]	+	[[Category: Koga Y]]
-	[[Category: Koga, Y]]	+	[[Category: Matsumura H]]
-	[[Category: Matsumura, H]]	+	[[Category: Takano K]]
-	[[Category: Takano, K]]	+	[[Category: You DJ]]
-	[[Category: You~~, D J]]~~	+
-	~~[[Category: Beta-roll]]~~	+
-	~~[[Category: Calcium-binding protein]]~~	+
-	~~[[Category: Family i 3 lipase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:13, 10 November 2021

OCA — Wed, 10 Nov 2021 07:13:41 GMT

←Older revision		Revision as of 07:13, 10 November 2021
Line 3:		Line 3:
	<StructureSection load='2z8z' size='340' side='right'caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2z8z' size='340' side='right'caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pseudomonas_sp._mis38 Pseudomonas sp. mis38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._mis38 Pseudomonas sp. mis38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2z8x\|2z8x]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [~~http~~://pdbe.org/2z8z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [https://pdbe.org/2z8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [https://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 12:00, 29 July 2020

OCA — Wed, 29 Jul 2020 12:00:16 GMT

←Older revision		Revision as of 12:00, 29 July 2020
Line 1:		Line 1:

	==Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase==		==Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase==
-	<StructureSection load='2z8z' size='340' side='right' caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='2z8z' size='340' side='right'caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._mis38 Pseudomonas sp. mis38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._mis38 Pseudomonas sp. mis38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://pdbe.org/2z8z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://pdbe.org/2z8z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Lipase\|Lipase]]	+	*[[Lipase 3D Structures\|Lipase 3D Structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pseudomonas sp. mis38]]		[[Category: Pseudomonas sp. mis38]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]

OCA at 09:10, 17 October 2018

OCA — Wed, 17 Oct 2018 09:10:41 GMT

←Older revision		Revision as of 09:10, 17 October 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8z_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8z_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:38, 11 August 2016

OCA — Thu, 11 Aug 2016 07:38:19 GMT

←Older revision		Revision as of 07:38, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase==		==Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase==
	<StructureSection load='2z8z' size='340' side='right' caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2z8z' size='340' side='right' caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._mis38 Pseudomonas sp. mis38]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://pdbe.org/2z8z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8z ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z8z ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2z8z" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas sp]]	+	[[Category: Pseudomonas sp. mis38]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
	[[Category: Angkawidjaja, C]]		[[Category: Angkawidjaja, C]]

OCA at 08:10, 20 January 2015

OCA — Tue, 20 Jan 2015 08:10:11 GMT

←Older revision		Revision as of 08:10, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas sp.]]	+	[[Category: Pseudomonas sp]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
-	[[Category: Angkawidjaja, C.]]	+	[[Category: Angkawidjaja, C]]
-	[[Category: Kanaya, S.]]	+	[[Category: Kanaya, S]]
-	[[Category: Koga, Y.]]	+	[[Category: Koga, Y]]
-	[[Category: Matsumura, H.]]	+	[[Category: Matsumura, H]]
-	[[Category: Takano, K.]]	+	[[Category: Takano, K]]
-	[[Category: You, D J.]]	+	[[Category: You, D J]]
	[[Category: Beta-roll]]		[[Category: Beta-roll]]
	[[Category: Calcium-binding protein]]		[[Category: Calcium-binding protein]]
	[[Category: Family i 3 lipase]]		[[Category: Family i 3 lipase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 06:48, 29 September 2014

OCA — Mon, 29 Sep 2014 06:48:23 GMT

←Older revision		Revision as of 06:48, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2z8z.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase==
		+	<StructureSection load='2z8z' size='340' side='right' caption='[[2z8z]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Z8Z FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2z8x\|2z8x]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triacylglycerol_lipase Triacylglycerol lipase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.3 3.1.1.3] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2z8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2z8z RCSB], [http://www.ebi.ac.uk/pdbsum/2z8z PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8z_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation was determined at 1.5A resolution. This structure highly resembles that of Serratia marcescens LipA in an open conformation, except for the structures of two lids. Lid1 is anchored by a Ca2+ ion (Ca1) in an open conformation, but lacks this Ca1 site and greatly changes its structure and position in a closed conformation. Lid2 forms a helical hairpin in an open conformation, but does not form it and covers the active site in a closed conformation. Based on these results, we discuss on the lid-opening mechanism.

-	~~{{STRUCTURE_2z8z\| PDB=2z8z \| SCENE= }}~~	+	Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation.,Angkawidjaja C, You DJ, Matsumura H, Kuwahara K, Koga Y, Takano K, Kanaya S FEBS Lett. 2007 Oct 30;581(26):5060-4. Epub 2007 Oct 1. PMID:17923123<ref>PMID:17923123</ref>

-	~~===Crystal structure of~~ a ~~platinum-bound S445C mutant~~ of ~~Pseudomonas sp~~. ~~MIS38 lipase===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17923123}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2z8z]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA].~~	+

	==See Also==		==See Also==
	*[[Lipase\|Lipase]]		*[[Lipase\|Lipase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017923123<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas sp.]]		[[Category: Pseudomonas sp.]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]

OCA at 18:16, 20 October 2012

OCA — Sat, 20 Oct 2012 18:16:49 GMT

←Older revision		Revision as of 18:16, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2z8z]] is a 1 chain structure ~~of [[Lipase]]~~ with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA].	+	[[2z8z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA].

	==See Also==		==See Also==

OCA at 03:35, 27 July 2012

OCA — Fri, 27 Jul 2012 03:35:18 GMT

←Older revision		Revision as of 03:35, 27 July 2012
Line 1:		Line 1:
	[[Image:2z8z.png\|left\|200px]]		[[Image:2z8z.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2z8z", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2z8z\| PDB=2z8z \| SCENE= }}		{{STRUCTURE_2z8z\| PDB=2z8z \| SCENE= }}

	===Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase===		===Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17923123}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17923123 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17923123}}		{{ABSTRACT_PUBMED_17923123}}

	==About this Structure==		==About this Structure==
-	[[2z8z]] is a 1 chain structure of [[Lipase]] with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp.~~_mis38~~ Pseudomonas sp. ~~mis38~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA].	+	[[2z8z]] is a 1 chain structure of [[Lipase]] with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Z OCA].

	==See Also==		==See Also==
-	*[[Lipase]]	+	*[[Lipase\|Lipase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17923123~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017923123</ref><references group="xtra"/>
-	[[Category: Pseudomonas sp. ~~mis38~~]]	+	[[Category: Pseudomonas sp.]]
	[[Category: Triacylglycerol lipase]]		[[Category: Triacylglycerol lipase]]
	[[Category: Angkawidjaja, C.]]		[[Category: Angkawidjaja, C.]]

OCA: Protected "2z8z" [edit=sysop:move=sysop]

OCA — Sun, 26 Dec 2010 08:50:09 GMT

Protected "2z8z" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:50, 26 December 2010