2zah - Revision history

OCA at 13:28, 1 November 2023

OCA — Wed, 01 Nov 2023 13:28:16 GMT

←Older revision		Revision as of 13:28, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zah' size='340' side='right'caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>		<StructureSection load='2zah' size='340' side='right'caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.81Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[2tbv\|2tbv]]~~, ~~[[1opo\|1opo]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [~~http~~://pdbe.org/2zah PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zah PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zah ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [https://pdbe.org/2zah PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [https://www.ebi.ac.uk/pdbsum/2zah PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zah ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CAPSD_MNSV CAPSD_MNSV] Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins. Also acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Melon necrotic spot virus]]		[[Category: Melon necrotic spot virus]]
-	[[Category: Omura, T]]	+	[[Category: Omura T]]
-	[[Category: Tsukihara, T]]	+	[[Category: Tsukihara T]]
-	[[Category: Wada, Y]]	+	[[Category: Wada Y]]
-	~~[[Category: B-annulus]]~~	+
-	~~[[Category: Capsid protein]]~~	+
-	~~[[Category: Carmovirus]]~~	+
-	~~[[Category: Coat protein]]~~	+
-	~~[[Category: Fungal vector]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Mnsv]]~~	+
-	~~[[Category: Plant virus]]~~	+
-	~~[[Category: Tombusvirus]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 12:01, 29 July 2020

OCA — Wed, 29 Jul 2020 12:01:07 GMT

←Older revision		Revision as of 12:01, 29 July 2020
Line 1:		Line 1:

	==X-ray structure of Melon necrotic spot virus==		==X-ray structure of Melon necrotic spot virus==
-	<StructureSection load='2zah' size='340' side='right' caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>	+	<StructureSection load='2zah' size='340' side='right'caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://pdbe.org/2zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zah ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://pdbe.org/2zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zah ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Melon necrotic spot virus]]		[[Category: Melon necrotic spot virus]]
	[[Category: Omura, T]]		[[Category: Omura, T]]

OCA at 08:48, 17 October 2018

OCA — Wed, 17 Oct 2018 08:48:36 GMT

←Older revision		Revision as of 08:48, 17 October 2018
Line 1:		Line 1:
		+
	==X-ray structure of Melon necrotic spot virus==		==X-ray structure of Melon necrotic spot virus==
	<StructureSection load='2zah' size='340' side='right' caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>		<StructureSection load='2zah' size='340' side='right' caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://pdbe.org/2zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://pdbe.org/2zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zah ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/za/2zah_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/za/2zah_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 03:38, 8 February 2016

OCA — Mon, 08 Feb 2016 03:38:49 GMT

←Older revision		Revision as of 03:38, 8 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://pdbe.org/2zah PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zah ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2zah" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:51, 20 January 2015

OCA — Tue, 20 Jan 2015 08:51:17 GMT

←Older revision		Revision as of 08:51, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Melon necrotic spot virus]]		[[Category: Melon necrotic spot virus]]
-	[[Category: Omura, T.]]	+	[[Category: Omura, T]]
-	[[Category: Tsukihara, T.]]	+	[[Category: Tsukihara, T]]
-	[[Category: Wada, Y.]]	+	[[Category: Wada, Y]]
	[[Category: B-annulus]]		[[Category: B-annulus]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]

OCA at 05:16, 2 October 2014

OCA — Thu, 02 Oct 2014 05:16:21 GMT

←Older revision		Revision as of 05:16, 2 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2zah.~~png~~\|~~left~~\|200px]]	+	==X-ray structure of Melon necrotic spot virus==
		+	<StructureSection load='2zah' size='340' side='right' caption='[[2zah]], [[Resolution\|resolution]] 2.81Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2zah]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZAH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2tbv\|2tbv]], [[1opo\|1opo]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zah FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zah OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zah RCSB], [http://www.ebi.ac.uk/pdbsum/2zah PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/za/2zah_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of melon necrotic spot virus (MNSV) was determined at 2.8 A resolution. Although MNSV is classified into the genus Carmovirus of the family Tombusviridae, the three-dimensional structure of MNSV showed a higher degree of similarity to tomato bushy stunt virus (TBSV), which belongs to the genus Tombusvirus, than to carnation mottle virus (CMtV), turnip crinkle virus (TCV) or cowpea mottle virus (CPMtV) from the genus Carmovirus. Thus, the classification of the family Tombusviridae at the genus level conflicts with the patterns of similarity among coat-protein structures. MNSV is one of the viruses belonging to the genera Tombusvirus or Carmovirus that are naturally transmitted in the soil by zoospores of fungal vectors. The X-ray structure of MNSV provides us with a representative structure of viruses transmitted by fungi.

-	~~{{STRUCTURE_2zah\| PDB=2zah \| SCENE= }}~~	+	The structure of melon necrotic spot virus determined at 2.8 A resolution.,Wada Y, Tanaka H, Yamashita E, Kubo C, Ichiki-Uehara T, Nakazono-Nagaoka E, Omura T, Tsukihara T Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jan 1;64(Pt, 1):8-13. Epub 2007 Dec 20. PMID:18097092<ref>PMID:18097092</ref>

-	~~===X-ray structure~~ of ~~Melon necrotic spot virus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18097092}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2zah]] is a 3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018097092<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Melon necrotic spot virus]]		[[Category: Melon necrotic spot virus]]
	[[Category: Omura, T.]]		[[Category: Omura, T.]]

OCA: Protected "2zah" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:14:41 GMT

Protected "2zah" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:14, 7 January 2013

OCA at 21:14, 7 January 2013

OCA — Mon, 07 Jan 2013 21:14:40 GMT

←Older revision		Revision as of 21:14, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2zah.png\|left\|200px]]		[[Image:2zah.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zah", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2zah\| PDB=2zah \| SCENE= }}		{{STRUCTURE_2zah\| PDB=2zah \| SCENE= }}

	===X-ray structure of Melon necrotic spot virus===		===X-ray structure of Melon necrotic spot virus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18097092}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18097092 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18097092}}		{{ABSTRACT_PUBMED_18097092}}

	==About this Structure==		==About this Structure==
-	~~2ZAH~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA].	+	[[2zah]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18097092~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018097092</ref><references group="xtra"/>
	[[Category: Melon necrotic spot virus]]		[[Category: Melon necrotic spot virus]]
	[[Category: Omura, T.]]		[[Category: Omura, T.]]
Line 37:		Line 25:
	[[Category: Plant virus]]		[[Category: Plant virus]]
	[[Category: Tombusvirus]]		[[Category: Tombusvirus]]
-		+	[[Category: Virus]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 18:32:22 2009''~~	+

OCA at 16:32, 16 February 2009

OCA — Mon, 16 Feb 2009 16:32:23 GMT

←Older revision		Revision as of 16:32, 16 February 2009
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:2zah.~~jpg~~\|left\|200px]]	+	[[Image:2zah.png\|left\|200px]]

	<!--		<!--
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2ZAH is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA].	+	2ZAH is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA].

	==Reference==		==Reference==
-	The structure of melon necrotic spot virus determined at 2.8 A resolution., Wada Y, Tanaka H, Yamashita E, Kubo C, Ichiki-Uehara T, Nakazono-Nagaoka E, Omura T, Tsukihara T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jan 1;64(Pt, 1):8-13. Epub 2007 Dec 20. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18097092 18097092]~~	+	<ref group="xtra">PMID:18097092</ref><references group="xtra"/>
	[[Category: Melon necrotic spot virus]]		[[Category: Melon necrotic spot virus]]
-	[[Category: Single protein]]
	[[Category: Omura, T.]]		[[Category: Omura, T.]]
	[[Category: Tsukihara, T.]]		[[Category: Tsukihara, T.]]
Line 39:		Line 38:
	[[Category: Tombusvirus]]		[[Category: Tombusvirus]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Oct 8 09~~:24:22 ~~2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:32:22 2009''

OCA at 07:24, 8 October 2008

OCA — Wed, 08 Oct 2008 07:24:23 GMT

←Older revision		Revision as of 07:24, 8 October 2008
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2zah.jpg\|left\|200px]]

-	The ~~entry 2zah~~ is ~~ON HOLD~~ ~~until Oct 05 2009~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2zah", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2zah\| PDB=2zah \| SCENE= }}

-	~~Authors: Wada, Y., Tsukihara, T., Omura, T.~~	+	===X-ray structure of Melon necrotic spot virus===

-	Description: X-ray structure of Melon necrotic spot virus

		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_18097092}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 18097092 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_18097092}}

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jun 11~~ 09:06:38 2008''	+	==About this Structure==
		+	2ZAH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Melon_necrotic_spot_virus Melon necrotic spot virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZAH OCA].
		+
		+	==Reference==
		+	The structure of melon necrotic spot virus determined at 2.8 A resolution., Wada Y, Tanaka H, Yamashita E, Kubo C, Ichiki-Uehara T, Nakazono-Nagaoka E, Omura T, Tsukihara T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jan 1;64(Pt, 1):8-13. Epub 2007 Dec 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18097092 18097092]
		+	[[Category: Melon necrotic spot virus]]
		+	[[Category: Single protein]]
		+	[[Category: Omura, T.]]
		+	[[Category: Tsukihara, T.]]
		+	[[Category: Wada, Y.]]
		+	[[Category: B-annulus]]
		+	[[Category: Capsid protein]]
		+	[[Category: Carmovirus]]
		+	[[Category: Coat protein]]
		+	[[Category: Fungal vector]]
		+	[[Category: Icosahedral virus]]
		+	[[Category: Mnsv]]
		+	[[Category: Plant virus]]
		+	[[Category: Tombusvirus]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 8 09:24:22 2008''