2zif - Revision history

OCA at 13:36, 1 November 2023

OCA — Wed, 01 Nov 2023 13:36:43 GMT

←Older revision		Revision as of 13:36, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zif' size='340' side='right'caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2zif' size='340' side='right'caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SAM:S~~-~~ADENOSYLMETHIONINE'>SAM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2zie\|2zie]], [[2zig\|2zig]]~~</~~div~~>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [https://pdbe.org/2zif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [https://www.ebi.ac.uk/pdbsum/2zif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zif ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [https://pdbe.org/2zif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [https://www.ebi.ac.uk/pdbsum/2zif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zif ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5SL84_THET8 Q5SL84_THET8]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ishikawa, H]]
-	[[Category: Kuramitsu, S]]
-	[[Category: Masui, R]]
-	[[Category: Morita, R]]
-	[[Category: Nakagawa, N]]
-	[[Category: Structural genomic]]
-	[[Category: Yokoyama, S]]
-	[[Category: Methyltransferase]]
-	[[Category: Modification methylase]]
-	[[Category: National project on protein structural and functional analyse]]
-	[[Category: Nppsfa]]
-	[[Category: Rsgi]]
-	[[Category: S-adenosylmethionine]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: ~~Transferase~~]]	+	[[Category: Ishikawa H]]
		+	[[Category: Kuramitsu S]]
		+	[[Category: Masui R]]
		+	[[Category: Morita R]]
		+	[[Category: Nakagawa N]]
		+	[[Category: Yokoyama S]]

OCA at 17:30, 15 December 2021

OCA — Wed, 15 Dec 2021 17:30:35 GMT

←Older revision		Revision as of 17:30, 15 December 2021
Line 1:		Line 1:

	==Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine==		==Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine==
-	<StructureSection load='2zif' size='340' side='right' caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='2zif' size='340' side='right'caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2zie\|2zie]], [[2zig\|2zig]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [~~http~~://pdbe.org/2zif PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zif PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zif ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [https://pdbe.org/2zif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [https://www.ebi.ac.uk/pdbsum/2zif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zif ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zi/2zif_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zi/2zif_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]

OCA at 09:40, 12 October 2017

OCA — Thu, 12 Oct 2017 09:40:36 GMT

←Older revision		Revision as of 09:40, 12 October 2017
Line 1:		Line 1:
		+
	==Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine==		==Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine==
	<StructureSection load='2zif' size='340' side='right' caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2zif' size='340' side='right' caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://pdbe.org/2zif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://pdbe.org/2zif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zif ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:43, 7 February 2016

OCA — Sun, 07 Feb 2016 11:43:07 GMT

←Older revision		Revision as of 11:43, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2zif' size='340' side='right' caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2zif' size='340' side='right' caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 ~~Thermus thermophilus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://pdbe.org/2zif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zif ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus~~]]	+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
Line 34:		Line 34:
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: S-adenosylmethionine]]		[[Category: S-adenosylmethionine]]
		+	[[Category: Thermus thermophilus]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 08:33, 20 January 2015

OCA — Tue, 20 Jan 2015 08:33:53 GMT

←Older revision		Revision as of 08:33, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Ishikawa, H.]]	+	[[Category: Ishikawa, H]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Masui, R.]]	+	[[Category: Masui, R]]
-	[[Category: Morita, R.]]	+	[[Category: Morita, R]]
-	[[Category: Nakagawa, N.]]	+	[[Category: Nakagawa, N]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Methyltransferase]]		[[Category: Methyltransferase]]
	[[Category: Modification methylase]]		[[Category: Modification methylase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: S-adenosylmethionine]]		[[Category: S-adenosylmethionine]]
-	[[Category: Structural genomic]]
-	[[Category: Thermus thermophilus]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:09, 2 October 2014

OCA — Thu, 02 Oct 2014 05:09:41 GMT

←Older revision		Revision as of 05:09, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:2zif.png\|left\|200px]]~~	+	==Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine==
-		+	<StructureSection load='2zif' size='340' side='right' caption='[[2zif]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{STRUCTURE_2zif\| PDB=2zif \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZIF FirstGlance]. <br>
-	===Crystal Structure of TTHA0409, Putative DNA Modification Methylase from Thermus thermophilus HB8- Complexed with S-Adenosyl-L-Methionine===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zie\|2zie]], [[2zig\|2zig]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA0409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zif OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zif RCSB], [http://www.ebi.ac.uk/pdbsum/2zif PDBsum]</span></td></tr>
-	[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA].	+	<table>
-		+	== Evolutionary Conservation ==
-	==~~Reference~~==	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~018618709~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zi/2zif_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Ishikawa, H.]]		[[Category: Ishikawa, H.]]

OCA: Protected "2zif" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:04:20 GMT

Protected "2zif" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:04, 7 January 2013

OCA at 21:04, 7 January 2013

OCA — Mon, 07 Jan 2013 21:04:17 GMT

←Older revision		Revision as of 21:04, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2zif.png\|left\|200px]]		[[Image:2zif.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zif", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2zif\| PDB=2zif \| SCENE= }}		{{STRUCTURE_2zif\| PDB=2zif \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2ZIF~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA].	+	[[2zif]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18618709~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018618709</ref><references group="xtra"/>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Ishikawa, H.]]		[[Category: Ishikawa, H.]]
Line 35:		Line 28:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 13:34:07 2009''~~	+

OCA at 11:34, 16 February 2009

OCA — Mon, 16 Feb 2009 11:34:09 GMT

←Older revision		Revision as of 11:34, 16 February 2009
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2ZIF is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA].	+	2ZIF is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZIF OCA].

	==Reference==		==Reference==
-	~~Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8., Morita R, Ishikawa H, Nakagawa N, Kuramitsu S, Masui R, Proteins. 2008 Oct;73(1):259-64.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18618709 18618709]~~	+	<ref group="xtra">PMID:18618709</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Ishikawa, H.]]		[[Category: Ishikawa, H.]]
Line 37:		Line 36:
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Sep 18 09~~:58:~~47 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 13:34:07 2009''

OCA at 06:58, 18 September 2008

OCA — Thu, 18 Sep 2008 06:58:49 GMT

←Older revision		Revision as of 06:58, 18 September 2008
Line 17:		Line 17:

	==Reference==		==Reference==
-	Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8., Morita R, Ishikawa H, Nakagawa N, Kuramitsu S, Masui R, Proteins. 2008 ~~Jul 10~~;73(1):259-~~264~~. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18618709 18618709]	+	Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8., Morita R, Ishikawa H, Nakagawa N, Kuramitsu S, Masui R, Proteins. 2008 Oct;73(1):259-64. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18618709 18618709]
	[[Category: Single protein]]		[[Category: Single protein]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
Line 37:		Line 37:
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Aug 27 10~~:41:36 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 18 09:58:47 2008''