2zsq - Revision history

OCA at 13:52, 1 November 2023

OCA — Wed, 01 Nov 2023 13:52:55 GMT

←Older revision		Revision as of 13:52, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zsq' size='340' side='right'caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>		<StructureSection load='2zsq' size='340' side='right'caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Phycd Phycd~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.21Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [https://pdbe.org/2zsq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [https://www.ebi.ac.uk/pdbsum/2zsq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [https://pdbe.org/2zsq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [https://www.ebi.ac.uk/pdbsum/2zsq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Phycd~~]]	+	[[Category: Physeter catodon]]
-	[[Category: Adachi, S]]	+	[[Category: Adachi S]]
-	[[Category: Chollet, M]]	+	[[Category: Chollet M]]
-	[[Category: Ichikawa, H]]	+	[[Category: Ichikawa H]]
-	[[Category: Ichiyanagi, K]]	+	[[Category: Ichiyanagi K]]
-	[[Category: Kawai, F]]	+	[[Category: Kawai F]]
-	[[Category: Koshihara, S]]	+	[[Category: Koshihara S]]
-	[[Category: Nozawa, S]]	+	[[Category: Nozawa S]]
-	[[Category: Park, S Y]]	+	[[Category: Park S-Y]]
-	[[Category: Sato, T]]	+	[[Category: Sato T]]
-	[[Category: Tomita, A]]	+	[[Category: Tomita A]]
-	~~[[Category: Haem protein]]~~	+
-	~~[[Category: Ligand migration]]~~	+
-	~~[[Category: Myoglobin]]~~	+
-	~~[[Category: Oxygen transport]]~~	+
-	~~[[Category: Photodissociation~~]]	+

OCA at 17:36, 15 December 2021

OCA — Wed, 15 Dec 2021 17:36:47 GMT

←Older revision		Revision as of 17:36, 15 December 2021
Line 3:		Line 3:
	<StructureSection load='2zsq' size='340' side='right'caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>		<StructureSection load='2zsq' size='340' side='right'caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [~~http~~://pdbe.org/2zsq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zsq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [https://pdbe.org/2zsq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [https://www.ebi.ac.uk/pdbsum/2zsq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Myoglobin\|Myoglobin]]	+	*[[Myoglobin 3D structures\|Myoglobin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:19, 31 July 2019

OCA — Wed, 31 Jul 2019 07:19:53 GMT

←Older revision		Revision as of 07:19, 31 July 2019
Line 1:		Line 1:

	==Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]==		==Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]==
-	<StructureSection load='2zsq' size='340' side='right' caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>	+	<StructureSection load='2zsq' size='340' side='right'caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/2zsq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/2zsq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 2zsq" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2zsq" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Myoglobin\|Myoglobin]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Phycd]]		[[Category: Phycd]]
	[[Category: Adachi, S]]		[[Category: Adachi, S]]

OCA at 10:25, 12 October 2017

OCA — Thu, 12 Oct 2017 10:25:14 GMT

←Older revision		Revision as of 10:25, 12 October 2017
Line 1:		Line 1:
		+
	==Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]==		==Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]==
	<StructureSection load='2zsq' size='340' side='right' caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>		<StructureSection load='2zsq' size='340' side='right' caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Physeter_catodon Physeter catodon~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://pdbe.org/2zsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://pdbe.org/2zsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 2zsq" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2zsq" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Myoglobin\|Myoglobin]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Physeter catodon~~]]	+	[[Category: Phycd]]
	[[Category: Adachi, S]]		[[Category: Adachi, S]]
	[[Category: Chollet, M]]		[[Category: Chollet, M]]

OCA at 12:21, 7 February 2016

OCA — Sun, 07 Feb 2016 12:21:19 GMT

←Older revision		Revision as of 12:21, 7 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://pdbe.org/2zsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~MYG_PHYCA MYG_PHYCA~~]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[[http://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zsq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2zsq" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 15:03, 24 December 2014

OCA — Wed, 24 Dec 2014 15:03:56 GMT

←Older revision		Revision as of 15:03, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MYG_PHYCA MYG_PHYCA]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
-	[[Category: Adachi, S.]]	+	[[Category: Adachi, S]]
-	[[Category: Chollet, M.]]	+	[[Category: Chollet, M]]
-	[[Category: Ichikawa, H.]]	+	[[Category: Ichikawa, H]]
-	[[Category: Ichiyanagi, K.]]	+	[[Category: Ichiyanagi, K]]
-	[[Category: Kawai, F.]]	+	[[Category: Kawai, F]]
-	[[Category: Koshihara, S.]]	+	[[Category: Koshihara, S]]
-	[[Category: Nozawa, S.]]	+	[[Category: Nozawa, S]]
-	[[Category: Park, S Y.]]	+	[[Category: Park, S Y]]
-	[[Category: Sato, T.]]	+	[[Category: Sato, T]]
-	[[Category: Tomita, A.]]	+	[[Category: Tomita, A]]
	[[Category: Haem protein]]		[[Category: Haem protein]]
	[[Category: Ligand migration]]		[[Category: Ligand migration]]

OCA at 07:20, 29 September 2014

OCA — Mon, 29 Sep 2014 07:20:52 GMT

←Older revision		Revision as of 07:20, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2zsq.~~png~~\|~~left~~\|200px]]	+	==Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]==
		+	<StructureSection load='2zsq' size='340' side='right' caption='[[2zsq]], [[Resolution\|resolution]] 1.21Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSQ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3e5o\|3e5o]], [[3ed9\|3ed9]], [[2zss\|2zss]], [[2zst\|2zst]], [[2zsx\|2zsx]], [[2zsy\|2zsy]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsq RCSB], [http://www.ebi.ac.uk/pdbsum/2zsq PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/2zsq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Proteins harbor a number of cavities of relatively small volume. Although these packing defects are associated with the thermodynamic instability of the proteins, the cavities also play specific roles in controlling protein functions, e.g., ligand migration and binding. This issue has been extensively studied in a well-known protein, myoglobin (Mb). Mb reversibly binds gas ligands at the heme site buried in the protein matrix and possesses several internal cavities in which ligand molecules can reside. It is still an open question as to how a ligand finds its migration pathways between the internal cavities. Here, we report on the dynamic and sequential structural deformation of internal cavities during the ligand migration process in Mb. Our method, the continuous illumination of native carbonmonoxy Mb crystals with pulsed laser at cryogenic temperatures, has revealed that the migration of the CO molecule into each cavity induces structural changes of the amino acid residues around the cavity, which results in the expansion of the cavity with a breathing motion. The sequential motion of the ligand and the cavity suggests a self-opening mechanism of the ligand migration channel arising by induced fit, which is further supported by computational geometry analysis by the Delaunay tessellation method. This result suggests a crucial role of the breathing motion of internal cavities as a general mechanism of ligand migration in a protein matrix.

-	~~{{STRUCTURE_2zsq\| PDB=2zsq \| SCENE= }}~~	+	Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin.,Tomita A, Sato T, Ichiyanagi K, Nozawa S, Ichikawa H, Chollet M, Kawai F, Park SY, Tsuduki T, Yamato T, Koshihara SY, Adachi SI Proc Natl Acad Sci U S A. 2009 Feb 9. PMID:19204297<ref>PMID:19204297</ref>

-	~~===Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19204297}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2zsq]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Physeter_catodon Physeter catodon]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA].~~	+

	==See Also==		==See Also==
	*[[Myoglobin\|Myoglobin]]		*[[Myoglobin\|Myoglobin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019204297<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
	[[Category: Adachi, S.]]		[[Category: Adachi, S.]]

OCA at 06:37, 20 October 2012

OCA — Sat, 20 Oct 2012 06:37:50 GMT

←Older revision		Revision as of 06:37, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2zsq]] is a 1 chain structure ~~of [[Myoglobin]]~~ with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA].	+	[[2zsq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSQ OCA].

	==See Also==		==See Also==

OCA at 13:49, 25 July 2012

OCA — Wed, 25 Jul 2012 13:49:06 GMT

←Older revision		Revision as of 13:49, 25 July 2012
Line 1:		Line 1:
	[[Image:2zsq.png\|left\|200px]]		[[Image:2zsq.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zsq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2zsq\| PDB=2zsq \| SCENE= }}		{{STRUCTURE_2zsq\| PDB=2zsq \| SCENE= }}

	===Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]===		===Carbonmonoxy Sperm Whale Myoglobin at 140 K: Laser on [150 min]===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19204297}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19204297 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19204297}}		{{ABSTRACT_PUBMED_19204297}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Myoglobin]]	+	*[[Myoglobin\|Myoglobin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19204297~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019204297</ref><references group="xtra"/>
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
	[[Category: Adachi, S.]]		[[Category: Adachi, S.]]

OCA: Protected "2zsq" [edit=sysop:move=sysop]

OCA — Mon, 27 Dec 2010 01:02:22 GMT

Protected "2zsq" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:02, 27 December 2010