2zsu - Revision history

OCA at 13:53, 1 November 2023

OCA — Wed, 01 Nov 2023 13:53:24 GMT

←Older revision		Revision as of 13:53, 1 November 2023
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	<StructureSection load='2zsu' size='340' side='right'caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2zsu' size='340' side='right'caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~'pyrococcus_shinkaii' 'pyrococcus shinkaii'~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=AG3:1-{4~~-[~~(3-AMINOPROPYL)AMINO~~]~~BUTYL}GUANIDINE'>AG3</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number~~ [~~http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16~~] </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [~~http~~://pdbe.org/2zsu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zsu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [https://pdbe.org/2zsu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [https://www.ebi.ac.uk/pdbsum/2zsu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/SPEE_PYRHO SPEE_PYRHO]] Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine (By similarity).[HAMAP-Rule:MF_00198]	+	[https://www.uniprot.org/uniprot/SPEE_PYRHO SPEE_PYRHO] Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine (By similarity).[HAMAP-Rule:MF_00198]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus shinkaii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Spermidine synthase~~]]	+	[[Category: Pyrococcus horikoshii]]
-	[[Category: Kunishima, N]]	+	[[Category: Kunishima N]]
-	[[Category: Mizutani, H]]	+	[[Category: Mizutani H]]
-	~~[[Category: Aminopropylagmatine]]~~	+
-	~~[[Category: Polyamine biosynthesis]]~~	+
-	~~[[Category: Spermidine biosynthesis]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 12:09, 29 July 2020

OCA — Wed, 29 Jul 2020 12:09:26 GMT

←Older revision		Revision as of 12:09, 29 July 2020
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	==Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form==		==Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form==
-	<StructureSection load='2zsu' size='340' side='right' caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='2zsu' size='340' side='right'caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://pdbe.org/2zsu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://pdbe.org/2zsu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:

	==See Also==		==See Also==
-	*[[Spermidine ~~Synthase~~\|Spermidine ~~Synthase~~]]	+	*[[Spermidine synthase 3D structures\|Spermidine synthase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus shinkaii]]		[[Category: Pyrococcus shinkaii]]
		+	[[Category: Large Structures]]
	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]

OCA at 07:16, 18 October 2018

OCA — Thu, 18 Oct 2018 07:16:55 GMT

←Older revision		Revision as of 07:16, 18 October 2018
Line 1:		Line 1:
		+
	==Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form==		==Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form==
	<StructureSection load='2zsu' size='340' side='right' caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2zsu' size='340' side='right' caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://pdbe.org/2zsu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://pdbe.org/2zsu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zsu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/2zsu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/2zsu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:07, 7 February 2016

OCA — Sun, 07 Feb 2016 07:07:48 GMT

←Older revision		Revision as of 07:07, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2zsu' size='340' side='right' caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2zsu' size='340' side='right' caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://pdbe.org/2zsu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zsu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus ~~horikoshii~~]]	+	[[Category: Pyrococcus shinkaii]]
	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]

OCA at 08:51, 24 December 2014

OCA — Wed, 24 Dec 2014 08:51:55 GMT

←Older revision		Revision as of 08:51, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SPEE_PYRHO SPEE_PYRHO]] Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine (By similarity).[HAMAP-Rule:MF_00198]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 26:
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]
-	[[Category: Kunishima, N.]]	+	[[Category: Kunishima, N]]
-	[[Category: Mizutani, H.]]	+	[[Category: Mizutani, H]]
	[[Category: Aminopropylagmatine]]		[[Category: Aminopropylagmatine]]
	[[Category: Polyamine biosynthesis]]		[[Category: Polyamine biosynthesis]]
	[[Category: Spermidine biosynthesis]]		[[Category: Spermidine biosynthesis]]
-	[[Category: Spermidine synthase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 09:03, 29 September 2014

OCA — Mon, 29 Sep 2014 09:03:43 GMT

←Older revision		Revision as of 09:03, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2zsu.png\|left\|200px]]~~	+	==Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form==
-		+	<StructureSection load='2zsu' size='340' side='right' caption='[[2zsu]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_2zsu\| PDB=2zsu \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZSU FirstGlance]. <br>
-	===Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AG3:1-{4-[(3-AMINOPROPYL)AMINO]BUTYL}GUANIDINE'>AG3</scene><br>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Spermidine_synthase Spermidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zsu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zsu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zsu RCSB], [http://www.ebi.ac.uk/pdbsum/2zsu PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/2zsu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Spermidine Synthase\|Spermidine Synthase]]		*[[Spermidine Synthase\|Spermidine Synthase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]

OCA: Protected "2zsu" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 05:56:46 GMT

Protected "2zsu" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:56, 20 October 2012

OCA at 05:56, 20 October 2012

OCA — Sat, 20 Oct 2012 05:56:42 GMT

←Older revision		Revision as of 05:56, 20 October 2012
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-	{{Seed}}
	[[Image:2zsu.png\|left\|200px]]		[[Image:2zsu.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zsu", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2zsu\| PDB=2zsu \| SCENE= }}		{{STRUCTURE_2zsu\| PDB=2zsu \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2ZSU~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA].	+	[[2zsu]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA].
		+
		+	==See Also==
		+	*[[Spermidine Synthase\|Spermidine Synthase]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]
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	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:10:03 2009''

OCA at 10:10, 16 February 2009

OCA — Mon, 16 Feb 2009 10:10:04 GMT

←Older revision		Revision as of 10:10, 16 February 2009
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	{{Seed}}		{{Seed}}
-	[[Image:2zsu.~~jpg~~\|left\|200px]]	+	[[Image:2zsu.png\|left\|200px]]

	<!--		<!--
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	==About this Structure==		==About this Structure==
-	2ZSU is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA].	+	2ZSU is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA].
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
-	[[Category: Single protein]]
	[[Category: Spermidine synthase]]		[[Category: Spermidine synthase]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N.]]
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	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Oct 22 10~~:40:~~00 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:10:03 2009''

OCA at 08:40, 22 October 2008

OCA — Wed, 22 Oct 2008 08:40:01 GMT

←Older revision		Revision as of 08:40, 22 October 2008
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-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2zsu.jpg\|left\|200px]]

-	The ~~entry 2zsu~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2zsu", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2zsu\| PDB=2zsu \| SCENE= }}

-	~~Authors: Mizutani~~, ~~H., Kunishima, N.~~	+	===Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form===

-	Description: Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Sep 24~~ 10:11:11 2008''	+	==About this Structure==
		+	2ZSU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZSU OCA].
		+	[[Category: Pyrococcus horikoshii]]
		+	[[Category: Single protein]]
		+	[[Category: Spermidine synthase]]
		+	[[Category: Kunishima, N.]]
		+	[[Category: Mizutani, H.]]
		+	[[Category: Aminopropylagmatine]]
		+	[[Category: Polyamine biosynthesis]]
		+	[[Category: Spermidine biosynthesis]]
		+	[[Category: Spermidine synthase]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 10:40:00 2008''