2zu8 - Revision history

OCA at 13:54, 1 November 2023

OCA — Wed, 01 Nov 2023 13:54:58 GMT

←Older revision		Revision as of 13:54, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zu8' size='340' side='right'caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2zu8' size='340' side='right'caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~'pyrococcus_shinkaii' 'pyrococcus shinkaii'~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GDD:GUANOSINE~~-~~5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>~~[[~~Non-Standard_Residue~~\|~~NonStd Res:~~]]~~</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2zu7\|2zu7]], [[2zu9\|2zu9]]</div></td></tr>~~	+
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~"><~~b>[[Gene\|Gene:]]</b></td><td class~~=~~"sblockDat">PH0927 ([https~~:~~//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=~~5~~&id=53953~~ '~~Pyrococcus shinkaii'])</td~~></tr>	+
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>[https://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [https://pdbe.org/2zu8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [https://www.ebi.ac.uk/pdbsum/2zu8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [https://pdbe.org/2zu8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [https://www.ebi.ac.uk/pdbsum/2zu8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO]] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.	+	[https://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus shinkaii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mannosyl-3-phosphoglycerate synthase~~]]	+	[[Category: Pyrococcus horikoshii]]
-	[[Category: Kawamura, T]]	+	[[Category: Kawamura T]]
-	[[Category: Tanaka, I]]	+	[[Category: Tanaka I]]
-	[[Category: Watanabe, N]]	+	[[Category: Watanabe N]]
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Gdp-mannose]]~~	+
-	~~[[Category: Glycosyltransferase]]~~	+
-	~~[[Category: Gt-a fold]]~~	+
-	~~[[Category: Gt55]]~~	+
-	~~[[Category: Magnesium]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 17:38, 15 December 2021

OCA — Wed, 15 Dec 2021 17:38:04 GMT

OCA at 07:17, 18 October 2018

OCA — Thu, 18 Oct 2018 07:17:41 GMT

←Older revision		Revision as of 07:17, 18 October 2018
Line 17:		Line 17:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zu8_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zu8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	[[Category: Tanaka, I]]		[[Category: Tanaka, I]]
	[[Category: Watanabe, N]]		[[Category: Watanabe, N]]
		+	[[Category: Cytoplasm]]
	[[Category: Gdp-mannose]]		[[Category: Gdp-mannose]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]

OCA at 09:54, 5 August 2016

OCA — Fri, 05 Aug 2016 09:54:02 GMT

←Older revision		Revision as of 09:54, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==		==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==
	<StructureSection load='2zu8' size='340' side='right' caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2zu8' size='340' side='right' caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zu7\|2zu7]], [[2zu9\|2zu9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zu7\|2zu7]], [[2zu9\|2zu9]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus ~~horikoshii~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [http://www.ebi.ac.uk/pdbsum/2zu8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [http://pdbe.org/2zu8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [http://www.ebi.ac.uk/pdbsum/2zu8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 21:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zu8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Pyrococcus shinkaii]]
	[[Category: Mannosyl-3-phosphoglycerate synthase]]		[[Category: Mannosyl-3-phosphoglycerate synthase]]
-	[[Category: Pyrococcus horikoshii]]
	[[Category: Kawamura, T]]		[[Category: Kawamura, T]]
	[[Category: Tanaka, I]]		[[Category: Tanaka, I]]

OCA at 17:51, 25 December 2014

OCA — Thu, 25 Dec 2014 17:51:25 GMT

←Older revision		Revision as of 17:51, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zu7\|2zu7]], [[2zu9\|2zu9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zu7\|2zu7]], [[2zu9\|2zu9]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [http://www.ebi.ac.uk/pdbsum/2zu8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [http://www.ebi.ac.uk/pdbsum/2zu8 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO]] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 26:
	[[Category: Mannosyl-3-phosphoglycerate synthase]]		[[Category: Mannosyl-3-phosphoglycerate synthase]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
-	[[Category: Kawamura, T.]]	+	[[Category: Kawamura, T]]
-	[[Category: Tanaka, I.]]	+	[[Category: Tanaka, I]]
-	[[Category: Watanabe, N.]]	+	[[Category: Watanabe, N]]
	[[Category: Gdp-mannose]]		[[Category: Gdp-mannose]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]

OCA at 05:30, 2 October 2014

OCA — Thu, 02 Oct 2014 05:30:53 GMT

←Older revision		Revision as of 05:30, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:2zu8.png\|left\|200px]]~~	+	==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==
-		+	<StructureSection load='2zu8' size='340' side='right' caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{STRUCTURE_2zu8\| PDB=2zu8 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>
-	===Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zu7\|2zu7]], [[2zu9\|2zu9]]</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])</td></tr>
-	[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA].	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [http://www.ebi.ac.uk/pdbsum/2zu8 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zu/2zu8_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Mannosyl-3-phosphoglycerate synthase]]		[[Category: Mannosyl-3-phosphoglycerate synthase]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]

OCA: Protected "2zu8" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:33:09 GMT

Protected "2zu8" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:33, 7 January 2013

OCA at 21:33, 7 January 2013

OCA — Mon, 07 Jan 2013 21:33:04 GMT

←Older revision		Revision as of 21:33, 7 January 2013
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-	~~{{Seed}}~~	+	[[Image:2zu8.png\|left\|200px]]
-	[[Image:2zu8.~~jpg~~\|left\|200px]]	+

-	<!--
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	{{STRUCTURE_2zu8\| PDB=2zu8 \| SCENE= }}		{{STRUCTURE_2zu8\| PDB=2zu8 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2ZU8~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA].	+	[[2zu8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA].
	[[Category: Mannosyl-3-phosphoglycerate synthase]]		[[Category: Mannosyl-3-phosphoglycerate synthase]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
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	[[Category: Tanaka, I.]]		[[Category: Tanaka, I.]]
	[[Category: Watanabe, N.]]		[[Category: Watanabe, N.]]
-	[[Category: Cytoplasm]]
	[[Category: Gdp-mannose]]		[[Category: Gdp-mannose]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
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	[[Category: Magnesium]]		[[Category: Magnesium]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 13:44:56 2009''

OCA at 11:44, 28 October 2009

OCA — Wed, 28 Oct 2009 11:44:57 GMT

←Older revision		Revision as of 11:44, 28 October 2009
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-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2zu8.jpg\|left\|200px]]

-	The ~~entry 2zu8~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2zu8", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2zu8\| PDB=2zu8 \| SCENE= }}

-	~~Authors: Kawamura, T., Watanabe, N., Tanaka, I.~~	+	===Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii===

-	Description: Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Nov 5 11~~:36:~~04 2008~~''	+	==About this Structure==
		+	2ZU8 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA].
		+	[[Category: Mannosyl-3-phosphoglycerate synthase]]
		+	[[Category: Pyrococcus horikoshii]]
		+	[[Category: Kawamura, T.]]
		+	[[Category: Tanaka, I.]]
		+	[[Category: Watanabe, N.]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Gdp-mannose]]
		+	[[Category: Glycosyltransferase]]
		+	[[Category: Gt-a fold]]
		+	[[Category: Gt55]]
		+	[[Category: Magnesium]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 13:44:56 2009''

OCA at 09:36, 5 November 2008

OCA — Wed, 05 Nov 2008 09:36:05 GMT

←Older revision		Revision as of 09:36, 5 November 2008
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2zu8 is ON HOLD	+	The entry 2zu8 is ON HOLD until Paper Publication

	Authors: Kawamura, T., Watanabe, N., Tanaka, I.		Authors: Kawamura, T., Watanabe, N., Tanaka, I.
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	Description: Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii		Description: Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Oct 22 10~~:13:37 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 5 11:36:04 2008''

←Older revision		Revision as of 17:38, 15 December 2021
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	==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==		==Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii==
-	<StructureSection load='2zu8' size='340' side='right' caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='2zu8' size='340' side='right'caption='[[2zu8]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zu8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZU8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZU8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDD:GUANOSINE-5-DIPHOSPHATE-ALPHA-D-MANNOSE'>GDD</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zu7\|2zu7]], [[2zu9\|2zu9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2zu7\|2zu7]], [[2zu9\|2zu9]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH0927 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_synthase Mannosyl-3-phosphoglycerate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.217 2.4.1.217] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [~~http~~://pdbe.org/2zu8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zu8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zu8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zu8 OCA], [https://pdbe.org/2zu8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zu8 RCSB], [https://www.ebi.ac.uk/pdbsum/2zu8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zu8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO]] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.	+	[[https://www.uniprot.org/uniprot/MPGS_PYRHO MPGS_PYRHO]] Transfers a mannosyl group from GDP-mannose to phosphoglycerate to form mannosyl-3-phosphoglycerate (MPG). The enzyme is absolutely specific for GDP-mannose and 3-phosphoglycerate, and transfers the mannosyl group with retention of configuration.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus shinkaii]]		[[Category: Pyrococcus shinkaii]]
		+	[[Category: Large Structures]]
	[[Category: Mannosyl-3-phosphoglycerate synthase]]		[[Category: Mannosyl-3-phosphoglycerate synthase]]
	[[Category: Kawamura, T]]		[[Category: Kawamura, T]]