2zwi - Revision history

OCA at 13:58, 1 November 2023

OCA — Wed, 01 Nov 2023 13:58:51 GMT

←Older revision		Revision as of 13:58, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zwi' size='340' side='right'caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>		<StructureSection load='2zwi' size='340' side='right'caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"acinetobacter_phosphorescens"_brisou_1955 "acinetobacter phosphorescens" brisou 1955~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.01Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 "Acinetobacter phosphorescens" Brisou 1955])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [https://pdbe.org/2zwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [https://www.ebi.ac.uk/pdbsum/2zwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [https://pdbe.org/2zwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [https://www.ebi.ac.uk/pdbsum/2zwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwi ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A5LHX0_PHOPO A5LHX0_PHOPO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Acinetobacter phosphorescens brisou 1955]]
-	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ichikawa, M]]
-	[[Category: Ito, M]]
-	[[Category: Iwatani, T]]
-	[[Category: Kajiwara, H]]
-	[[Category: Kakuta, Y]]
-	[[Category: Kimura, M]]
-	[[Category: Okino, N]]
-	[[Category: Sakakura, M]]
-	[[Category: Takakura, Y]]
-	[[Category: Yamamoto, T]]
-	[[Category: 3-sialyltransfease]]
-	[[Category: Alpha-2]]
-	[[Category: Glycosyltransferase]]
-	[[Category: Jt-ish-467]]
	[[Category: Photobacterium phosphoreum]]		[[Category: Photobacterium phosphoreum]]
-	[[Category: ~~Transferase~~]]	+	[[Category: Ichikawa M]]
		+	[[Category: Ito M]]
		+	[[Category: Iwatani T]]
		+	[[Category: Kajiwara H]]
		+	[[Category: Kakuta Y]]
		+	[[Category: Kimura M]]
		+	[[Category: Okino N]]
		+	[[Category: Sakakura M]]
		+	[[Category: Takakura Y]]
		+	[[Category: Yamamoto T]]

OCA at 17:39, 15 December 2021

OCA — Wed, 15 Dec 2021 17:39:32 GMT

←Older revision		Revision as of 17:39, 15 December 2021
Line 1:		Line 1:

	==Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>==		==Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>==
-	<StructureSection load='2zwi' size='340' side='right' caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>	+	<StructureSection load='2zwi' size='340' side='right'caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"acinetobacter_phosphorescens"_brisou_1955 "acinetobacter phosphorescens" brisou 1955]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"acinetobacter_phosphorescens"_brisou_1955 "acinetobacter phosphorescens" brisou 1955]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 "Acinetobacter phosphorescens" Brisou 1955])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 "Acinetobacter phosphorescens" Brisou 1955])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [~~http~~://pdbe.org/2zwi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zwi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [https://pdbe.org/2zwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [https://www.ebi.ac.uk/pdbsum/2zwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 2zwi" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2zwi" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Sialyltransferase 3D structures\|Sialyltransferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 37:
	[[Category: Acinetobacter phosphorescens brisou 1955]]		[[Category: Acinetobacter phosphorescens brisou 1955]]
	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]		[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
		+	[[Category: Large Structures]]
	[[Category: Ichikawa, M]]		[[Category: Ichikawa, M]]
	[[Category: Ito, M]]		[[Category: Ito, M]]

OCA at 06:54, 18 October 2018

OCA — Thu, 18 Oct 2018 06:54:00 GMT

←Older revision		Revision as of 06:54, 18 October 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zwi_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zwi_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:43, 11 August 2016

OCA — Thu, 11 Aug 2016 18:43:21 GMT

←Older revision		Revision as of 18:43, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>==		==Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>==
	<StructureSection load='2zwi' size='340' side='right' caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>		<StructureSection load='2zwi' size='340' side='right' caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Photobacterium_phosphoreum Photobacterium phosphoreum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"acinetobacter_phosphorescens"_brisou_1955 "acinetobacter phosphorescens" brisou 1955]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 ~~Photobacterium phosphoreum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 "Acinetobacter phosphorescens" Brisou 1955])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [http://www.ebi.ac.uk/pdbsum/2zwi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [http://pdbe.org/2zwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [http://www.ebi.ac.uk/pdbsum/2zwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zwi ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2zwi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acinetobacter phosphorescens brisou 1955]]
	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]		[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
-	[[Category: Photobacterium phosphoreum]]
	[[Category: Ichikawa, M]]		[[Category: Ichikawa, M]]
	[[Category: Ito, M]]		[[Category: Ito, M]]
Line 46:		Line 48:
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
	[[Category: Jt-ish-467]]		[[Category: Jt-ish-467]]
		+	[[Category: Photobacterium phosphoreum]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 08:56, 20 January 2015

OCA — Tue, 20 Jan 2015 08:56:48 GMT

←Older revision		Revision as of 08:56, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 Photobacterium phosphoreum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 Photobacterium phosphoreum])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [http://www.ebi.ac.uk/pdbsum/2zwi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [http://www.ebi.ac.uk/pdbsum/2zwi PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]		[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
	[[Category: Photobacterium phosphoreum]]		[[Category: Photobacterium phosphoreum]]
-	[[Category: Ichikawa, M.]]	+	[[Category: Ichikawa, M]]
-	[[Category: Ito, M.]]	+	[[Category: Ito, M]]
-	[[Category: Iwatani, T.]]	+	[[Category: Iwatani, T]]
-	[[Category: Kajiwara, H.]]	+	[[Category: Kajiwara, H]]
-	[[Category: Kakuta, Y.]]	+	[[Category: Kakuta, Y]]
-	[[Category: Kimura, M.]]	+	[[Category: Kimura, M]]
-	[[Category: Okino, N.]]	+	[[Category: Okino, N]]
-	[[Category: Sakakura, M.]]	+	[[Category: Sakakura, M]]
-	[[Category: Takakura, Y.]]	+	[[Category: Takakura, Y]]
-	[[Category: Yamamoto, T.]]	+	[[Category: Yamamoto, T]]
	[[Category: 3-sialyltransfease]]		[[Category: 3-sialyltransfease]]
	[[Category: Alpha-2]]		[[Category: Alpha-2]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
	[[Category: Jt-ish-467]]		[[Category: Jt-ish-467]]
-	[[Category: Photobacterium phosphoreum]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:18, 2 October 2014

OCA — Thu, 02 Oct 2014 05:18:45 GMT

←Older revision		Revision as of 05:18, 2 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2zwi.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>==
		+	<StructureSection load='2zwi' size='340' side='right' caption='[[2zwi]], [[Resolution\|resolution]] 2.01Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2zwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWI FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pst3-467 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=659 Photobacterium phosphoreum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,3-sialyltransferase Beta-galactoside alpha-2,3-sialyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.4 2.4.99.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwi RCSB], [http://www.ebi.ac.uk/pdbsum/2zwi PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zwi_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Alpha/beta-galactoside alpha2,3-sialyltransferase produced by Photobacterium phosphoreum JT-ISH-467 is a unique enzyme that catalyzes the transfer of N-acetylneuraminic acid residue from cytidine monophosphate N-acetylneuraminic acid to acceptor carbohydrate groups. The enzyme recognizes both mono- and di-saccharides as acceptor substrates, and can transfer Neu5Ac to both alpha-galactoside and beta-galactoside, efficiently. To elucidate the structural basis for the broad acceptor substrate specificity, we determined the crystal structure of the alpha2,3-sialyltransferase in complex with CMP. The overall structure belongs to the glycosyltransferase-B structural group. We could model a reasonable active conformation structure based on the crystal structure. The predicted structure suggested that the broad substrate specificity could be attributed to the wider entrance of the acceptor substrate binding site.

-	~~{{STRUCTURE_2zwi\| PDB=2zwi \| SCENE= }}~~	+	Crystal structure of alpha/beta-galactoside alpha2,3-sialyltransferase from a luminous marine bacterium, Photobacterium phosphoreum.,Iwatani T, Okino N, Sakakura M, Kajiwara H, Takakura Y, Kimura M, Ito M, Yamamoto T, Kakuta Y FEBS Lett. 2009 Jun 18;583(12):2083-7. Epub 2009 May 23. PMID:19467231<ref>PMID:19467231</ref>

-	~~===Crystal structure of alpha~~/~~beta-Galactoside alpha-2~~,~~3-Sialyltransferase from~~ a ~~Luminous Marine Bacterium,~~ <I>~~Photobacterium phosphoreum~~</I>~~===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19467231}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[2zwi]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA].~~	+	</StructureSection>
-		+
-	~~==Reference==~~	+
-	<~~ref group="xtra">PMID:019467231</ref><references group="xtra"~~/>	+
	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]		[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
	[[Category: Photobacterium phosphoreum]]		[[Category: Photobacterium phosphoreum]]

OCA: Protected "2zwi" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:17:50 GMT

Protected "2zwi" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:17, 7 January 2013

OCA at 21:17, 7 January 2013

OCA — Mon, 07 Jan 2013 21:17:48 GMT

←Older revision		Revision as of 21:17, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2zwi.png\|left\|200px]]		[[Image:2zwi.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zwi", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2zwi\| PDB=2zwi \| SCENE= }}		{{STRUCTURE_2zwi\| PDB=2zwi \| SCENE= }}

	===Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>===		===Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19467231}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19467231 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19467231}}		{{ABSTRACT_PUBMED_19467231}}

	==About this Structure==		==About this Structure==
-	~~2ZWI~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA].	+	[[2zwi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19467231~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019467231</ref><references group="xtra"/>
	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]		[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
	[[Category: Photobacterium phosphoreum]]		[[Category: Photobacterium phosphoreum]]
Line 42:		Line 30:
	[[Category: Photobacterium phosphoreum]]		[[Category: Photobacterium phosphoreum]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 1 09:51:42 2009''

OCA at 06:51, 1 July 2009

OCA — Wed, 01 Jul 2009 06:51:44 GMT

←Older revision		Revision as of 06:51, 1 July 2009
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:2zwi.~~jpg~~\|left\|200px]]	+	[[Image:2zwi.png\|left\|200px]]

	<!--		<!--
Line 43:		Line 43:
	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jun 10 17~~:58:37 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 1 09:51:42 2009''

OCA at 14:58, 10 June 2009

OCA — Wed, 10 Jun 2009 14:58:39 GMT

←Older revision		Revision as of 14:58, 10 June 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2zwi.jpg\|left\|200px]]

-	The ~~entry 2zwi~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2zwi", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2zwi\| PDB=2zwi \| SCENE= }}

-	~~Authors: Iwatani~~, T., ~~Okino, N., Sakakura, M., Kajiwara, H., Ichikawa, M., Takakura, Y., Kimura, M., Ito, M., Yamamoto, T., Kakuta, Y.~~	+	===Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>===

-	Description: Crystal structure of alpha/beta-Galactoside alpha-2,3-Sialyltransferase from a Luminous Marine Bacterium, <I>Photobacterium phosphoreum</I>

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Dec 31 09~~:38:~~50 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19467231}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19467231 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19467231}}
		+
		+	==About this Structure==
		+	2ZWI is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Photobacterium_phosphoreum Photobacterium phosphoreum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWI OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19467231</ref><references group="xtra"/>
		+	[[Category: Beta-galactoside alpha-2,3-sialyltransferase]]
		+	[[Category: Photobacterium phosphoreum]]
		+	[[Category: Ichikawa, M.]]
		+	[[Category: Ito, M.]]
		+	[[Category: Iwatani, T.]]
		+	[[Category: Kajiwara, H.]]
		+	[[Category: Kakuta, Y.]]
		+	[[Category: Kimura, M.]]
		+	[[Category: Okino, N.]]
		+	[[Category: Sakakura, M.]]
		+	[[Category: Takakura, Y.]]
		+	[[Category: Yamamoto, T.]]
		+	[[Category: 3-sialyltransfease]]
		+	[[Category: Alpha-2]]
		+	[[Category: Glycosyltransferase]]
		+	[[Category: Jt-ish-467]]
		+	[[Category: Photobacterium phosphoreum]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 17:58:37 2009''