2zwm - Revision history

OCA at 13:59, 1 November 2023

OCA — Wed, 01 Nov 2023 13:59:10 GMT

←Older revision		Revision as of 13:59, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='2zwm' size='340' side='right'caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>		<StructureSection load='2zwm' size='340' side='right'caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.04Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[2d1v\|2d1v]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">yycF ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [https://pdbe.org/2zwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [https://www.ebi.ac.uk/pdbsum/2zwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [https://pdbe.org/2zwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [https://www.ebi.ac.uk/pdbsum/2zwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~YYCF_BACSU YYCF_BACSU]~~] Member of the two-component regulatory system ~~YycG~~/~~YycF~~ involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons~~. Probably phosphorylates YycF~~. Binds to the ftsAZ P1 promoter sequence in vitro. ~~YycF~~ has been shown to directly bind to the regulatory regions of yocH, ykvT, tagAB/tagDEF. Activates cwlO, lytE and ydjM and represses yoeB and yjeA.<ref>PMID:~~9829949~~</ref> <ref>PMID:~~10878122~~</ref> <ref>PMID:17581128</ref>	+	[https://www.uniprot.org/uniprot/WALR_BACSU WALR_BACSU] Member of the two-component regulatory system WalK/WalR involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Binds to the ftsAZ P1 promoter sequence in vitro. WalR has been shown to directly bind to the regulatory regions of yocH, ykvT, tagAB/tagDEF. Activates cwlO, lytE and ydjM and represses yoeB and yjeA.<ref>PMID:10878122</ref> <ref>PMID:12950927</ref> <ref>PMID:17581128</ref> <ref>PMID:9829949</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Doi, A]]	+	[[Category: Doi A]]
-	[[Category: Okajima, T]]	+	[[Category: Okajima T]]
-	[[Category: Utsumi, R]]	+	[[Category: Utsumi R]]
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Dimerization domain]]~~	+
-	~~[[Category: Dna-binding]]~~	+
-	~~[[Category: Phosphoprotein]]~~	+
-	~~[[Category: Phosphorylation site]]~~	+
-	~~[[Category: Response regulator]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription regulation]]~~	+
-	~~[[Category: Two-component regulatory system]]~~	+
-	~~[[Category: Two-component system~~]]	+

OCA at 17:39, 15 December 2021

OCA — Wed, 15 Dec 2021 17:39:40 GMT

←Older revision		Revision as of 17:39, 15 December 2021
Line 1:		Line 1:

	==Crystal structure of YycF receiver domain from Bacillus subtilis==		==Crystal structure of YycF receiver domain from Bacillus subtilis==
-	<StructureSection load='2zwm' size='340' side='right' caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>	+	<StructureSection load='2zwm' size='340' side='right'caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2d1v\|2d1v]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [~~http~~://pdbe.org/2zwm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2zwm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [https://pdbe.org/2zwm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [https://www.ebi.ac.uk/pdbsum/2zwm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/YYCF_BACSU YYCF_BACSU]] Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter sequence in vitro. YycF has been shown to directly bind to the regulatory regions of yocH, ykvT, tagAB/tagDEF. Activates cwlO, lytE and ydjM and represses yoeB and yjeA.<ref>PMID:9829949</ref> <ref>PMID:10878122</ref> <ref>PMID:17581128</ref>	+	[[https://www.uniprot.org/uniprot/YYCF_BACSU YYCF_BACSU]] Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter sequence in vitro. YycF has been shown to directly bind to the regulatory regions of yocH, ykvT, tagAB/tagDEF. Activates cwlO, lytE and ydjM and represses yoeB and yjeA.<ref>PMID:9829949</ref> <ref>PMID:10878122</ref> <ref>PMID:17581128</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Response regulator\|Response regulator]]	+	*[[Response regulator 3D structure\|Response regulator 3D structure]]
	== References ==		== References ==
	<references/>		<references/>
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
		+	[[Category: Large Structures]]
	[[Category: Doi, A]]		[[Category: Doi, A]]
	[[Category: Okajima, T]]		[[Category: Okajima, T]]

OCA at 07:39, 18 October 2018

OCA — Thu, 18 Oct 2018 07:39:28 GMT

←Older revision		Revision as of 07:39, 18 October 2018
Line 1:		Line 1:
		+
	==Crystal structure of YycF receiver domain from Bacillus subtilis==		==Crystal structure of YycF receiver domain from Bacillus subtilis==
	<StructureSection load='2zwm' size='340' side='right' caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>		<StructureSection load='2zwm' size='340' side='right' caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://pdbe.org/2zwm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://pdbe.org/2zwm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zwm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zwm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zwm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 28:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Doi, A]]		[[Category: Doi, A]]
	[[Category: Okajima, T]]		[[Category: Okajima, T]]
	[[Category: Utsumi, R]]		[[Category: Utsumi, R]]
		+	[[Category: Cytoplasm]]
	[[Category: Dimerization domain]]		[[Category: Dimerization domain]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]

OCA at 16:01, 7 February 2016

OCA — Sun, 07 Feb 2016 16:01:53 GMT

←Older revision		Revision as of 16:01, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='2zwm' size='340' side='right' caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>		<StructureSection load='2zwm' size='340' side='right' caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://pdbe.org/2zwm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zwm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 27:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Doi, A]]		[[Category: Doi, A]]
	[[Category: Okajima, T]]		[[Category: Okajima, T]]

OCA at 16:29, 24 December 2014

OCA — Wed, 24 Dec 2014 16:29:14 GMT

←Older revision		Revision as of 16:29, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/YYCF_BACSU YYCF_BACSU]] Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter sequence in vitro. YycF has been shown to directly bind to the regulatory regions of yocH, ykvT, tagAB/tagDEF. Activates cwlO, lytE and ydjM and represses yoeB and yjeA.<ref>PMID:9829949</ref> <ref>PMID:10878122</ref> <ref>PMID:17581128</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	==See Also==		==See Also==
	*[[Response regulator\|Response regulator]]		*[[Response regulator\|Response regulator]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Doi, A.]]	+	[[Category: Doi, A]]
-	[[Category: Okajima, T.]]	+	[[Category: Okajima, T]]
-	[[Category: Utsumi, R.]]	+	[[Category: Utsumi, R]]
	[[Category: Dimerization domain]]		[[Category: Dimerization domain]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]

OCA at 09:25, 29 September 2014

OCA — Mon, 29 Sep 2014 09:25:15 GMT

←Older revision		Revision as of 09:25, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2zwm.png\|left\|200px]]~~	+	==Crystal structure of YycF receiver domain from Bacillus subtilis==
-		+	<StructureSection load='2zwm' size='340' side='right' caption='[[2zwm]], [[Resolution\|resolution]] 2.04Å' scene=''>
-	~~{{STRUCTURE_2zwm\| PDB=2zwm \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZWM FirstGlance]. <br>
-	===Crystal structure of YycF receiver domain from Bacillus subtilis===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2d1v\|2d1v]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yycF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zwm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zwm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2zwm RCSB], [http://www.ebi.ac.uk/pdbsum/2zwm PDBsum]</span></td></tr>
-	[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/2zwm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Response regulator\|Response regulator]]		*[[Response regulator\|Response regulator]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Doi, A.]]		[[Category: Doi, A.]]

OCA at 07:09, 20 October 2012

OCA — Sat, 20 Oct 2012 07:09:33 GMT

←Older revision		Revision as of 07:09, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[2zwm]] is a 2 chain structure ~~of [[Response regulator]]~~ with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA].	+	[[2zwm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA].

	==See Also==		==See Also==

OCA: Protected "2zwm" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 15:27:08 GMT

Protected "2zwm" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:27, 25 July 2012

OCA at 15:27, 25 July 2012

OCA — Wed, 25 Jul 2012 15:27:05 GMT

←Older revision		Revision as of 15:27, 25 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2zwm.png\|left\|200px]]
-	[[Image:2zwm.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2zwm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2zwm\| PDB=2zwm \| SCENE= }}		{{STRUCTURE_2zwm\| PDB=2zwm \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2ZWM~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA].	+	[[2zwm]] is a 2 chain structure of [[Response regulator]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA].
		+
		+	==See Also==
		+	*[[Response regulator\|Response regulator]]
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Doi, A.]]		[[Category: Doi, A.]]
	[[Category: Okajima, T.]]		[[Category: Okajima, T.]]
	[[Category: Utsumi, R.]]		[[Category: Utsumi, R.]]
-	[[Category: Cytoplasm]]
	[[Category: Dimerization domain]]		[[Category: Dimerization domain]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
Line 29:		Line 24:
	[[Category: Two-component regulatory system]]		[[Category: Two-component regulatory system]]
	[[Category: Two-component system]]		[[Category: Two-component system]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 15 13:47:28 2009''

OCA at 10:47, 15 July 2009

OCA — Wed, 15 Jul 2009 10:47:30 GMT

←Older revision		Revision as of 10:47, 15 July 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2zwm.jpg\|left\|200px]]

-	The ~~entry 2zwm~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2zwm", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2zwm\| PDB=2zwm \| SCENE= }}

-	~~Authors: Doi, A., Okajima, T., Gotoh, Y., Tanizawa, K., Utsumi, R.~~	+	===Crystal structure of YycF receiver domain from Bacillus subtilis===

-	Description: Crystal structure of YycF receiver domain from Bacillus subtilis

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 7 09~~:30:55 2009''	+	==About this Structure==
		+	2ZWM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZWM OCA].
		+	[[Category: Bacillus subtilis]]
		+	[[Category: Doi, A.]]
		+	[[Category: Okajima, T.]]
		+	[[Category: Utsumi, R.]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Dimerization domain]]
		+	[[Category: Dna-binding]]
		+	[[Category: Phosphoprotein]]
		+	[[Category: Phosphorylation site]]
		+	[[Category: Response regulator]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription regulation]]
		+	[[Category: Two-component regulatory system]]
		+	[[Category: Two-component system]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 15 13:47:28 2009''