3a2m - Revision history

OCA at 14:09, 1 November 2023

OCA — Wed, 01 Nov 2023 14:09:14 GMT

←Older revision		Revision as of 14:09, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3a2m' size='340' side='right'caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>		<StructureSection load='3a2m' size='340' side='right'caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium~~ japonicum~~" kirchner 1896~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A2M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A2M FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA~~-~~D-GLUCOSE'>GLC</scene>~~, ~~<scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.84Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3a1o\|3a1o]], [[3a2l\|3a2l]], [[3a2n\|3a2n]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td><~~td class~~=~~"sblockDat">DBJA ([https~~:~~//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td~~></tr>	+
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [https://pdbe.org/3a2m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [https://www.ebi.ac.uk/pdbsum/3a2m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a2m ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [https://pdbe.org/3a2m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [https://www.ebi.ac.uk/pdbsum/3a2m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a2m ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DHAA_BRADU DHAA_BRADU]] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.[HAMAP-Rule:MF_01231]	+	[https://www.uniprot.org/uniprot/DHAA_BRADU DHAA_BRADU] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.[HAMAP-Rule:MF_01231]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Rhizobacterium~~ japonicum ~~kirchner 1896]]~~	+	[[Category: Bradyrhizobium japonicum]]
-	~~[[Category: Haloalkane dehalogenase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Sato, Y]]	+	[[Category: Sato Y]]
-	[[Category: Senda, T]]	+	[[Category: Senda T]]
-	~~[[Category: A/b-hydrolase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 16:15, 22 December 2021

OCA — Wed, 22 Dec 2021 16:15:44 GMT

←Older revision		Revision as of 16:15, 22 December 2021
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)==		==CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)==
-	<StructureSection load='3a2m' size='340' side='right' caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>	+	<StructureSection load='3a2m' size='340' side='right'caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca.weizmann~~.~~ac.il/oca-docs~~/fgij/fg.htm?mol=3A2M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A2M FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=~~SUC~~:~~SUCROSE~~'>~~SUC~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a1o\|3a1o]], [[3a2l\|3a2l]], [[3a2n\|3a2n]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3a1o\|3a1o]], [[3a2l\|3a2l]], [[3a2n\|3a2n]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DBJA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DBJA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [~~http~~://pdbe.org/3a2m PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a2m PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a2m ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [https://pdbe.org/3a2m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [https://www.ebi.ac.uk/pdbsum/3a2m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a2m ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DHAA_BRADU DHAA_BRADU]] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.[HAMAP-Rule:MF_01231]	+	[[https://www.uniprot.org/uniprot/DHAA_BRADU DHAA_BRADU]] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.[HAMAP-Rule:MF_01231]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Dehalogenase\|Dehalogenase]]	+	*[[Dehalogenase 3D structures\|Dehalogenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Rhizobacterium japonicum kirchner 1896]]		[[Category: Rhizobacterium japonicum kirchner 1896]]
	[[Category: Haloalkane dehalogenase]]		[[Category: Haloalkane dehalogenase]]
		+	[[Category: Large Structures]]
	[[Category: Sato, Y]]		[[Category: Sato, Y]]
	[[Category: Senda, T]]		[[Category: Senda, T]]
	[[Category: A/b-hydrolase]]		[[Category: A/b-hydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 07:32, 18 October 2018

OCA — Thu, 18 Oct 2018 07:32:41 GMT

←Older revision		Revision as of 07:32, 18 October 2018
Line 16:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a2/3a2m_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a2/3a2m_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:25, 11 August 2016

OCA — Thu, 11 Aug 2016 19:25:16 GMT

←Older revision		Revision as of 19:25, 11 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)==		==CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)==
	<StructureSection load='3a2m' size='340' side='right' caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>		<StructureSection load='3a2m' size='340' side='right' caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bradyrhizobium_japonicum Bradyrhizobium~~ japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A2M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A2M FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a1o\|3a1o]], [[3a2l\|3a2l]], [[3a2n\|3a2n]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a1o\|3a1o]], [[3a2l\|3a2l]], [[3a2n\|3a2n]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DBJA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 ~~Bradyrhizobium~~ japonicum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DBJA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [http://www.ebi.ac.uk/pdbsum/3a2m PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [http://pdbe.org/3a2m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [http://www.ebi.ac.uk/pdbsum/3a2m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a2m ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DHAA_BRADU DHAA_BRADU]] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.[HAMAP-Rule:MF_01231]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a2m ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 24:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bradyrhizobium~~ japonicum]]	+	[[Category: Rhizobacterium japonicum kirchner 1896]]
	[[Category: Haloalkane dehalogenase]]		[[Category: Haloalkane dehalogenase]]
	[[Category: Sato, Y]]		[[Category: Sato, Y]]

OCA at 10:04, 25 January 2015

OCA — Sun, 25 Jan 2015 10:04:14 GMT

←Older revision		Revision as of 10:04, 25 January 2015
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Dehalogenase\|Dehalogenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Haloalkane dehalogenase]]		[[Category: Haloalkane dehalogenase]]
-	[[Category: Sato, Y.]]	+	[[Category: Sato, Y]]
-	[[Category: Senda, T.]]	+	[[Category: Senda, T]]
	[[Category: A/b-hydrolase]]		[[Category: A/b-hydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 12:02, 29 October 2014

OCA — Wed, 29 Oct 2014 12:02:05 GMT

←Older revision		Revision as of 12:02, 29 October 2014
Line 1:		Line 1:
-	~~[[Image:3a2m.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)==
-		+	<StructureSection load='3a2m' size='340' side='right' caption='[[3a2m]], [[Resolution\|resolution]] 1.84Å' scene=''>
-	~~{{STRUCTURE_3a2m\| PDB=3a2m \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3a2m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A2M FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3a1o\|3a1o]], [[3a2l\|3a2l]], [[3a2n\|3a2n]]</td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DBJA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 Bradyrhizobium japonicum])</td></tr>
-	==~~About this Structure~~==	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>
-	[[3a2m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA].	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a2m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a2m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a2m RCSB], [http://www.ebi.ac.uk/pdbsum/3a2m PDBsum]</span></td></tr>
-		+	</table>
-	==~~Reference~~==	+	== Evolutionary Conservation ==
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~020645368~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a2/3a2m_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Haloalkane dehalogenase]]		[[Category: Haloalkane dehalogenase]]

OCA: Protected "3a2m" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:45:24 GMT

Protected "3a2m" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:45, 7 January 2013

OCA at 21:45, 7 January 2013

OCA — Mon, 07 Jan 2013 21:45:22 GMT

←Older revision		Revision as of 21:45, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3a2m.png\|left\|200px]]		[[Image:3a2m.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a2m", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a2m\| PDB=3a2m \| SCENE= }}		{{STRUCTURE_3a2m\| PDB=3a2m \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3A2M~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA].	+	[[3a2m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20645368~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020645368</ref><references group="xtra"/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Haloalkane dehalogenase]]		[[Category: Haloalkane dehalogenase]]
Line 24:		Line 17:
	[[Category: A/b-hydrolase]]		[[Category: A/b-hydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 27 11:36:19 2010''

OCA at 08:25, 27 October 2010

OCA — Wed, 27 Oct 2010 08:25:57 GMT

←Older revision		Revision as of 08:25, 27 October 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3a2m.~~jpg~~\|left\|200px]]	+	[[Image:3a2m.png\|left\|200px]]

	<!--		<!--
Line 15:		Line 15:
	==About this Structure==		==About this Structure==
	3A2M is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA].		3A2M is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20645368</ref><references group="xtra"/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Haloalkane dehalogenase]]		[[Category: Haloalkane dehalogenase]]
Line 22:		Line 25:
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~May 26 08~~:29:49 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 27 11:36:19 2010''

OCA at 04:25, 26 May 2010

OCA — Wed, 26 May 2010 04:25:38 GMT

←Older revision		Revision as of 04:25, 26 May 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3a2m.jpg\|left\|200px]]

-	The ~~entry 3a2m~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3a2m", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3a2m\| PDB=3a2m \| SCENE= }}

-	~~Authors: Sato, Y., Senda, T.~~	+	===CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)===

-	Description: CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jun 17 09~~:36:~~26 2009~~''	+	==About this Structure==
		+	3A2M is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A2M OCA].
		+	[[Category: Bradyrhizobium japonicum]]
		+	[[Category: Haloalkane dehalogenase]]
		+	[[Category: Sato, Y.]]
		+	[[Category: Senda, T.]]
		+	[[Category: A/b-hydrolase]]
		+	[[Category: Hydrolase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 26 08:29:49 2010''