3a5g - Revision history

OCA at 14:11, 1 November 2023

OCA — Wed, 01 Nov 2023 14:11:18 GMT

←Older revision		Revision as of 14:11, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3a5g' size='340' side='right'caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>		<StructureSection load='3a5g' size='340' side='right'caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3A5G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A5G FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>~~, ~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.81Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[2zwj\|2zwj]]~~, ~~[[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [~~http~~://pdbe.org/3a5g PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a5g PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5g ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [https://pdbe.org/3a5g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [https://www.ebi.ac.uk/pdbsum/3a5g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5g ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7M422_9DIPT Q7M422_9DIPT]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 38:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Tokunagayusurika akamusi]]		[[Category: Tokunagayusurika akamusi]]
-	[[Category: Hasegawa, T]]	+	[[Category: Hasegawa T]]
-	[[Category: Kuwada, T]]	+	[[Category: Kuwada T]]
-	[[Category: Shishikura, F]]	+	[[Category: Shishikura F]]
-	[[Category: Takagi, T]]	+	[[Category: Takagi T]]
-	~~[[Category: Diptera]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Hemoglobin]]~~	+
-	~~[[Category: Insect]]~~	+
-	~~[[Category: Midge larva]]~~	+
-	~~[[Category: Oxygen transport]]~~	+
-	~~[[Category: Propsilocerus akamusi]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 12:17, 29 July 2020

OCA — Wed, 29 Jul 2020 12:17:00 GMT

←Older revision		Revision as of 12:17, 29 July 2020
Line 1:		Line 1:

	==Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)==		==Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)==
-	<StructureSection load='3a5g' size='340' side='right' caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>	+	<StructureSection load='3a5g' size='340' side='right'caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3A5G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3A5G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://pdbe.org/3a5g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5g ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://pdbe.org/3a5g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5g ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 34:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Tokunagayusurika akamusi]]		[[Category: Tokunagayusurika akamusi]]
	[[Category: Hasegawa, T]]		[[Category: Hasegawa, T]]

OCA at 07:31, 24 October 2018

OCA — Wed, 24 Oct 2018 07:31:31 GMT

←Older revision		Revision as of 07:31, 24 October 2018
Line 1:		Line 1:
		+
	==Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)==		==Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)==
	<StructureSection load='3a5g' size='340' side='right' caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>		<StructureSection load='3a5g' size='340' side='right' caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://pdbe.org/3a5g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://pdbe.org/3a5g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5g ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5g_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5g_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:29, 9 February 2016

OCA — Tue, 09 Feb 2016 14:29:01 GMT

←Older revision		Revision as of 14:29, 9 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://pdbe.org/3a5g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a5g ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3a5g" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 08:57, 20 January 2015

OCA — Tue, 20 Jan 2015 08:57:28 GMT

←Older revision		Revision as of 08:57, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5G FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5G FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Tokunagayusurika akamusi]]		[[Category: Tokunagayusurika akamusi]]
-	[[Category: Hasegawa, T.]]	+	[[Category: Hasegawa, T]]
-	[[Category: Kuwada, T.]]	+	[[Category: Kuwada, T]]
-	[[Category: Shishikura, F.]]	+	[[Category: Shishikura, F]]
-	[[Category: Takagi, T.]]	+	[[Category: Takagi, T]]
	[[Category: Diptera]]		[[Category: Diptera]]
	[[Category: Heme]]		[[Category: Heme]]

OCA at 07:20, 29 September 2014

OCA — Mon, 29 Sep 2014 07:20:58 GMT

←Older revision		Revision as of 07:20, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3a5g.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)==
		+	<StructureSection load='3a5g' size='340' side='right' caption='[[3a5g]], [[Resolution\|resolution]] 1.81Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3a5g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5G FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2zwj\|2zwj]], [[3a5a\|3a5a]], [[3a5b\|3a5b]], [[3a5h\|3a5h]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5g RCSB], [http://www.ebi.ac.uk/pdbsum/3a5g PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5g_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Haemoglobin component V (Hb V) from the midge larva Propsilocerus akamusi exhibits oxygen affinity despite the replacement of HisE7 and a pH-dependence of its functional properties. In order to understand the contribution of the distal residue to the ligand-binding properties and the pH-dependent structural changes in this insect Hb, the crystal structure of Hb V was determined under five different pH conditions. Structural comparisons of these Hb structures indicated that at neutral pH ArgE10 contributes to the stabilization of the haem-bound ligand molecule as a functional substitute for the nonpolar E7 residue. However, ArgE10 does not contribute to stabilization at acidic and alkaline pH because of the swinging movement of the Arg side chain under these conditions. This pH-dependent behaviour of Arg results in significant differences in the hydrogen-bond network on the distal side of the haem in the Hb V structures at different pH values. Furthermore, the change in pH results in a partial movement of the F helix, considering that coupled movements of ArgE10 and the F helix determine the haem location at each pH. These results suggested that Hb V retains its functional properties by adapting to the structural changes caused by amino-acid replacements.

-	~~{{STRUCTURE_3a5g\| PDB=3a5g \| SCENE= }}~~	+	pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera).,Kuwada T, Hasegawa T, Takagi T, Sato I, Shishikura F Acta Crystallogr D Biol Crystallogr. 2010 Mar;66(Pt 3):258-67. Epub 2010, Feb 12. PMID:20179337<ref>PMID:20179337</ref>

-	~~===Crystal structure~~ of ~~a hemoglobin component V from Propsilocerus akamusi (pH7~~.~~0 coordinates)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20179337}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3a5g]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].~~	+

	==See Also==		==See Also==
-	*[[Hemoglobin\|Hemoglobin]]	+	*[[Hemoglobin 3D structures\|Hemoglobin 3D structures]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020179337<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Tokunagayusurika akamusi]]		[[Category: Tokunagayusurika akamusi]]
	[[Category: Hasegawa, T.]]		[[Category: Hasegawa, T.]]

OCA at 14:09, 20 October 2012

OCA — Sat, 20 Oct 2012 14:09:06 GMT

←Older revision		Revision as of 14:09, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3a5g]] is a 1 chain structure ~~of [[Hemoglobin]]~~ with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].	+	[[3a5g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].

	==See Also==		==See Also==

OCA: Protected "3a5g" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 14:13:04 GMT

Protected "3a5g" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:13, 26 July 2012

OCA at 14:13, 26 July 2012

OCA — Thu, 26 Jul 2012 14:13:02 GMT

←Older revision		Revision as of 14:13, 26 July 2012
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-	{{Seed}}
	[[Image:3a5g.png\|left\|200px]]		[[Image:3a5g.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a5g", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a5g\| PDB=3a5g \| SCENE= }}		{{STRUCTURE_3a5g\| PDB=3a5g \| SCENE= }}

	===Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)===		===Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20179337}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20179337 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20179337}}		{{ABSTRACT_PUBMED_20179337}}

	==About this Structure==		==About this Structure==
-	~~3A5G~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].	+	[[3a5g]] is a 1 chain structure of [[Hemoglobin]] with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].
		+
		+	==See Also==
		+	*[[Hemoglobin\|Hemoglobin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20179337~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020179337</ref><references group="xtra"/>
	[[Category: Tokunagayusurika akamusi]]		[[Category: Tokunagayusurika akamusi]]
	[[Category: Hasegawa, T.]]		[[Category: Hasegawa, T.]]
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	[[Category: Propsilocerus akamusi]]		[[Category: Propsilocerus akamusi]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:22:30 2010''

OCA at 06:22, 24 March 2010

OCA — Wed, 24 Mar 2010 06:22:31 GMT

←Older revision		Revision as of 06:22, 24 March 2010
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	{{Seed}}		{{Seed}}
-	[[Image:3a5g.~~jpg~~\|left\|200px]]	+	[[Image:3a5g.png\|left\|200px]]

	<!--		<!--
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	===Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)===		===Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20179337}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20179337 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20179337}}

	==About this Structure==		==About this Structure==
	3A5G is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].		3A5G is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5G OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20179337</ref><references group="xtra"/>
	[[Category: Tokunagayusurika akamusi]]		[[Category: Tokunagayusurika akamusi]]
	[[Category: Hasegawa, T.]]		[[Category: Hasegawa, T.]]
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	[[Category: Transport]]		[[Category: Transport]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Feb 10 17~~:50:28 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:22:30 2010''