3a5v - Revision history

OCA at 14:12, 1 November 2023

OCA — Wed, 01 Nov 2023 14:12:37 GMT

←Older revision		Revision as of 14:12, 1 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A5V FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A5V FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA~~</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS~~</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene><~~/td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Alpha~~-~~galactosidase Alpha~~-~~galactosidase], with EC number [https://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.2.~~1~~.22~~ 3~~.2.1.22]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [https://pdbe.org/3a5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [https://www.ebi.ac.uk/pdbsum/3a5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5v ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [https://pdbe.org/3a5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [https://www.ebi.ac.uk/pdbsum/3a5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5v ProSAT]</span></td></tr>
	</table>		</table>
Line 34:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Alpha-galactosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Umbelopsis vinacea]]		[[Category: Umbelopsis vinacea]]
-	[[Category: Fujimoto, Z]]	+	[[Category: Fujimoto Z]]
-	[[Category: Kaneko, S]]	+	[[Category: Kaneko S]]
-	[[Category: Kobayashi, H]]	+	[[Category: Kobayashi H]]
-	~~[[Category: Beta/alpha barrel]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: N-glycosylation~~]]	+

OCA at 16:17, 22 December 2021

OCA — Wed, 22 Dec 2021 16:17:58 GMT

←Older revision		Revision as of 16:17, 22 December 2021
Line 3:		Line 3:
	<StructureSection load='3a5v' size='340' side='right'caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3a5v' size='340' side='right'caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Mortierella_vinacea Mortierella~~ vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3A5V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A5V FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=~~MAN~~:~~ALPHA~~-D-~~MANNOSE~~'>~~MAN~~</scene>, <scene name='pdbligand=~~NAG~~:~~N-ACETYL~~-D-~~GLUCOSAMINE~~'>~~NAG~~</scene>, <scene name='pdbligand=~~TRS~~:2-~~AMINO~~-2-~~HYDROXYMETHYL-PROPANE-1,3-DIOL~~'>~~TRS~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [~~http~~://pdbe.org/3a5v PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3a5v PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5v ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [https://pdbe.org/3a5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [https://www.ebi.ac.uk/pdbsum/3a5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5v ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 36:		Line 36:
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mortierella~~ vinacea]]	+	[[Category: Umbelopsis vinacea]]
	[[Category: Fujimoto, Z]]		[[Category: Fujimoto, Z]]
	[[Category: Kaneko, S]]		[[Category: Kaneko, S]]

OCA at 07:23, 31 July 2019

OCA — Wed, 31 Jul 2019 07:23:57 GMT

←Older revision		Revision as of 07:23, 31 July 2019
Line 1:		Line 1:

	==Crystal structure of alpha-galactosidase I from Mortierella vinacea==		==Crystal structure of alpha-galactosidase I from Mortierella vinacea==
-	<StructureSection load='3a5v' size='340' side='right' caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3a5v' size='340' side='right'caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mortierella_vinacea Mortierella vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mortierella_vinacea Mortierella vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5v_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5v_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 3a5v" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3a5v" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Galactosidase 3D structures\|Galactosidase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 32:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
		+	[[Category: Large Structures]]
	[[Category: Mortierella vinacea]]		[[Category: Mortierella vinacea]]
	[[Category: Fujimoto, Z]]		[[Category: Fujimoto, Z]]

OCA at 10:33, 12 October 2017

OCA — Thu, 12 Oct 2017 10:33:36 GMT

←Older revision		Revision as of 10:33, 12 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of alpha-galactosidase I from Mortierella vinacea==		==Crystal structure of alpha-galactosidase I from Mortierella vinacea==
	<StructureSection load='3a5v' size='340' side='right' caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3a5v' size='340' side='right' caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Umbelopsis_vinacea Umbelopsis~~ vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mortierella_vinacea Mortierella vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=~~TRS~~:2-~~AMINO~~-~~2-HYDROXYMETHYL-PROPANE-1,3-DIOL~~'>~~TRS~~</scene>, <scene name='pdbligand=~~MAN~~:~~ALPHA~~-D-~~MANNOSE~~'>~~MAN~~</scene>, <scene name='pdbligand=~~NAG~~:N-~~ACETYL~~-D-~~GLUCOSAMINE~~'>~~NAG~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://pdbe.org/3a5v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://pdbe.org/3a5v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5v ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 3a5v" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3a5v" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Galactosidase\|Galactosidase]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
-	[[Category: ~~Umbelopsis~~ vinacea]]	+	[[Category: Mortierella vinacea]]
	[[Category: Fujimoto, Z]]		[[Category: Fujimoto, Z]]
	[[Category: Kaneko, S]]		[[Category: Kaneko, S]]

OCA at 14:39, 9 February 2016

OCA — Tue, 09 Feb 2016 14:39:23 GMT

←Older revision		Revision as of 14:39, 9 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://pdbe.org/3a5v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a5v ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3a5v" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 09:01, 20 January 2015

OCA — Tue, 20 Jan 2015 09:01:51 GMT

←Older revision		Revision as of 09:01, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>		<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
	[[Category: Umbelopsis vinacea]]		[[Category: Umbelopsis vinacea]]
-	[[Category: Fujimoto, Z.]]	+	[[Category: Fujimoto, Z]]
-	[[Category: Kaneko, S.]]	+	[[Category: Kaneko, S]]
-	[[Category: Kobayashi, H.]]	+	[[Category: Kobayashi, H]]
	[[Category: Beta/alpha barrel]]		[[Category: Beta/alpha barrel]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: N-glycosylation]]		[[Category: N-glycosylation]]

OCA at 07:29, 29 September 2014

OCA — Mon, 29 Sep 2014 07:29:26 GMT

←Older revision		Revision as of 07:29, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:3a5v.~~png\|left~~\|200px]]	+	==Crystal structure of alpha-galactosidase I from Mortierella vinacea==
		+	<StructureSection load='3a5v' size='340' side='right' caption='[[3a5v]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A5V FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-galactosidase Alpha-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.22 3.2.1.22] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5v OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a5v RCSB], [http://www.ebi.ac.uk/pdbsum/3a5v PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5v_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of Umbelopsis vinacea alpha-galactosidase I, which belongs to glycoside hydrolase family 27, was determined at 2.0 A resolution. The monomer structure was well conserved with those of glycoside hydrolase family 27 enzymes. The biological tetramer structure of this enzyme was constructed by the crystallographic 4-fold symmetry, and tetramerization appeared to be caused by three inserted peptides that were involved in the tetramer interface. The quaternary structure indicated that the substrate specificity of this enzyme might be related to the tetramer formation. Three N-glycosylated sugar chains were observed, and their structures were found to be of the high-mannnose type.

-	~~{{STRUCTURE_3a5v\| PDB=3a5v \| SCENE= }}~~	+	The Tetramer Structure of the Glycoside Hydrolase Family 27 alpha-Galactosidase I from Umbelopsis vinacea.,Fujimoto Z, Kaneko S, Kim WD, Park GG, Momma M, Kobayashi H Biosci Biotechnol Biochem. 2009 Oct 7. PMID:19809163<ref>PMID:19809163</ref>

-	~~===Crystal structure~~ of ~~alpha-galactosidase I from Mortierella vinacea===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19809163}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3a5v]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA].~~	+

	==See Also==		==See Also==
	*[[Galactosidase\|Galactosidase]]		*[[Galactosidase\|Galactosidase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019809163<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
	[[Category: Umbelopsis vinacea]]		[[Category: Umbelopsis vinacea]]

OCA at 14:10, 20 October 2012

OCA — Sat, 20 Oct 2012 14:10:40 GMT

←Older revision		Revision as of 14:10, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3a5v]] is a 1 chain structure ~~of [[Galactosidase]]~~ with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA].	+	[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA].

	==See Also==		==See Also==
Line 14:		Line 14:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:019809163~~</ref><ref group="xtra">PMID:014646097</ref><ref group="xtra">PMID:009145516~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019809163</ref><references group="xtra"/>
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
	[[Category: Umbelopsis vinacea]]		[[Category: Umbelopsis vinacea]]

OCA at 14:17, 26 July 2012

OCA — Thu, 26 Jul 2012 14:17:58 GMT

←Older revision		Revision as of 14:17, 26 July 2012
Line 1:		Line 1:
	[[Image:3a5v.png\|left\|200px]]		[[Image:3a5v.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3a5v", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3a5v\| PDB=3a5v \| SCENE= }}		{{STRUCTURE_3a5v\| PDB=3a5v \| SCENE= }}

	===Crystal structure of alpha-galactosidase I from Mortierella vinacea===		===Crystal structure of alpha-galactosidase I from Mortierella vinacea===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19809163}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19809163 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19809163}}		{{ABSTRACT_PUBMED_19809163}}

	==About this Structure==		==About this Structure==
-	[[3a5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA].	+	[[3a5v]] is a 1 chain structure of [[Galactosidase]] with sequence from [http://en.wikipedia.org/wiki/Umbelopsis_vinacea Umbelopsis vinacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5V OCA].
		+
		+	==See Also==
		+	*[[Galactosidase\|Galactosidase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19809163~~</ref><ref group="xtra">PMID:~~14646097~~</ref><ref group="xtra">PMID:~~9145516~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019809163</ref><ref group="xtra">PMID:014646097</ref><ref group="xtra">PMID:009145516</ref><references group="xtra"/>
	[[Category: Alpha-galactosidase]]		[[Category: Alpha-galactosidase]]
	[[Category: Umbelopsis vinacea]]		[[Category: Umbelopsis vinacea]]

OCA: Protected "3a5v" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 19:53:15 GMT

Protected "3a5v" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:53, 14 March 2011