3adf - Revision history

OCA at 14:19, 1 November 2023

OCA — Wed, 01 Nov 2023 14:19:21 GMT

←Older revision		Revision as of 14:19, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3adf' size='340' side='right'caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3adf' size='340' side='right'caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Coral Coral~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ADF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ADF FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non~~-~~Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46745 Coral])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [https://pdbe.org/3adf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [https://www.ebi.ac.uk/pdbsum/3adf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3adf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [https://pdbe.org/3adf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [https://www.ebi.ac.uk/pdbsum/3adf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3adf ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q60I24_GALFS Q60I24_GALFS]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Coral~~]]	+	[[Category: Galaxea fascicularis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ebisawa, T]]	+	[[Category: Ebisawa T]]
-	[[Category: Hayakawa, K]]	+	[[Category: Hayakawa K]]
-	[[Category: Kameda, Y]]	+	[[Category: Kameda Y]]
-	[[Category: Nagata, K]]	+	[[Category: Nagata K]]
-	[[Category: Tanokura, M]]	+	[[Category: Tanokura M]]
-	[[Category: Yamamura, A]]	+	[[Category: Yamamura A]]
-	~~[[Category: Beta-barrel]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Green emission~~]]	+

OCA at 16:23, 22 December 2021

OCA — Wed, 22 Dec 2021 16:23:37 GMT

←Older revision		Revision as of 16:23, 22 December 2021
Line 1:		Line 1:

	==Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)==		==Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)==
-	<StructureSection load='3adf' size='340' side='right' caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3adf' size='340' side='right'caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Coral Coral]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ADF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Coral Coral]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ADF FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46745 Coral])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46745 Coral])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [~~http~~://pdbe.org/3adf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3adf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3adf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [https://pdbe.org/3adf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [https://www.ebi.ac.uk/pdbsum/3adf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3adf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]	+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Coral]]		[[Category: Coral]]
		+	[[Category: Large Structures]]
	[[Category: Ebisawa, T]]		[[Category: Ebisawa, T]]
	[[Category: Hayakawa, K]]		[[Category: Hayakawa, K]]

OCA at 07:42, 24 October 2018

OCA — Wed, 24 Oct 2018 07:42:39 GMT

←Older revision		Revision as of 07:42, 24 October 2018
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ad/3adf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ad/3adf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 02:59, 5 August 2016

OCA — Fri, 05 Aug 2016 02:59:28 GMT

←Older revision		Revision as of 02:59, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)==		==Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)==
	<StructureSection load='3adf' size='340' side='right' caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3adf' size='340' side='right' caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Galaxea_fascicularis Galaxea fascicularis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ADF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Coral Coral]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ADF FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46745 ~~Galaxea fascicularis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46745 Coral])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [http://www.ebi.ac.uk/pdbsum/3adf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [http://pdbe.org/3adf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [http://www.ebi.ac.uk/pdbsum/3adf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3adf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3adf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3adf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Galaxea fascicularis~~]]	+	[[Category: Coral]]
	[[Category: Ebisawa, T]]		[[Category: Ebisawa, T]]
	[[Category: Hayakawa, K]]		[[Category: Hayakawa, K]]

OCA at 16:46, 21 December 2014

OCA — Sun, 21 Dec 2014 16:46:35 GMT

←Older revision		Revision as of 16:46, 21 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3adf.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)==
		+	<StructureSection load='3adf' size='340' side='right' caption='[[3adf]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3adf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ADF FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRQ:[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC+ACID'>CRQ</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46745 Galaxea fascicularis])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3adf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3adf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3adf RCSB], [http://www.ebi.ac.uk/pdbsum/3adf PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ad/3adf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Monomeric Azami-Green (mAG) from the stony coral Galaxea fascicularis is the first known monomeric green-emitting fluorescent protein that is not a variant of Aequorea victoria green fluorescent protein (avGFP). These two green fluorescent proteins are only 27% identical in their amino-acid sequences. mAG is more similar in its amino-acid sequence to four fluorescent proteins: Dendra2 (a green-to-red irreversibly photoconverting fluorescent protein), Dronpa (a bright-and-dark reversibly photoswitchable fluorescent protein), KikG (a tetrameric green-emitting fluorescent protein) and Kaede (another green-to-red irreversibly photoconverting fluorescent protein). To reveal the structural basis of stable green emission by mAG, the 2.2 A crystal structure of mAG has been determined and compared with the crystal structures of avGFP, Dronpa, Dendra2, Kaede and KikG. The structural comparison revealed that the chromophore formed by Gln62-Tyr63-Gly64 (QYG) and the fixing of the conformation of the imidazole ring of His193 by hydrogen bonds and van der Waals contacts involving His193, Arg66 and Thr69 are likely to be required for the stable green emission of mAG. The crystal structure of mAG will contribute to the design and development of new monomeric fluorescent proteins with faster maturation, brighter fluorescence, improved photostability, new colours and other preferable properties as alternatives to avGFP and its variants.

-	~~{{STRUCTURE_3adf\| PDB=3adf \| SCENE= }}~~	+	The structure of mAG, a monomeric mutant of the green fluorescent protein Azami-Green, reveals the structural basis of its stable green emission.,Ebisawa T, Yamamura A, Kameda Y, Hayakawa K, Nagata K, Tanokura M Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 May 1;66(Pt, 5):485-9. Epub 2010 Apr 29. PMID:20445241<ref>PMID:20445241</ref>

-	~~===Crystal structure of a monomeric green fluorescent protein~~, ~~Azami-Green (mAG)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20445241}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3adf]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Galaxea_fascicularis Galaxea fascicularis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA].~~	+

	==See Also==		==See Also==
-	*[[Alyssa Marsico/Sandbox 1\|Alyssa Marsico/Sandbox 1]]
-	*[[Devon McCarthy/Sandbox 1\|Devon McCarthy/Sandbox 1]]
	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]		*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
-	*[[Sandbox104\|Sandbox104]]	+	== References ==
-	*[[User:Joanne Lau/Sandbox 5\|User:Joanne Lau/Sandbox 5]]	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:020445241<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Galaxea fascicularis]]		[[Category: Galaxea fascicularis]]
-	[[Category: Ebisawa, T.]]	+	[[Category: Ebisawa, T]]
-	[[Category: Hayakawa, K.]]	+	[[Category: Hayakawa, K]]
-	[[Category: Kameda, Y.]]	+	[[Category: Kameda, Y]]
-	[[Category: Nagata, K.]]	+	[[Category: Nagata, K]]
-	[[Category: Tanokura, M.]]	+	[[Category: Tanokura, M]]
-	[[Category: Yamamura, A.]]	+	[[Category: Yamamura, A]]
	[[Category: Beta-barrel]]		[[Category: Beta-barrel]]
	[[Category: Fluorescent protein]]		[[Category: Fluorescent protein]]
	[[Category: Green emission]]		[[Category: Green emission]]

OCA at 09:41, 20 October 2012

OCA — Sat, 20 Oct 2012 09:41:34 GMT

←Older revision		Revision as of 09:41, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3adf]] is a 2 chain structure ~~of [[Alyssa Marsico/Sandbox 1]], [[Devon McCarthy/Sandbox 1]], [[Green Fluorescent Protein]], [[Sandbox104]] and [[User:Joanne Lau/Sandbox 5]]~~ with sequence from [http://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA].	+	[[3adf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA].

	==See Also==		==See Also==

OCA: Protected "3adf" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 23:40:16 GMT

Protected "3adf" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:40, 25 July 2012

OCA at 23:40, 25 July 2012

OCA — Wed, 25 Jul 2012 23:40:14 GMT

←Older revision		Revision as of 23:40, 25 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3adf.png\|left\|200px]]
-	[[Image:3adf.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3adf", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3adf\| PDB=3adf \| SCENE= }}		{{STRUCTURE_3adf\| PDB=3adf \| SCENE= }}

	===Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)===		===Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20445241}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20445241 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20445241}}		{{ABSTRACT_PUBMED_20445241}}

	==About this Structure==		==About this Structure==
-	~~3ADF~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA].	+	[[3adf]] is a 2 chain structure of [[Alyssa Marsico/Sandbox 1]], [[Devon McCarthy/Sandbox 1]], [[Green Fluorescent Protein]], [[Sandbox104]] and [[User:Joanne Lau/Sandbox 5]] with sequence from [http://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA].
		+
		+	==See Also==
		+	*[[Alyssa Marsico/Sandbox 1\|Alyssa Marsico/Sandbox 1]]
		+	*[[Devon McCarthy/Sandbox 1\|Devon McCarthy/Sandbox 1]]
		+	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
		+	*[[Sandbox104\|Sandbox104]]
		+	*[[User:Joanne Lau/Sandbox 5\|User:Joanne Lau/Sandbox 5]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20445241~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020445241</ref><references group="xtra"/>
	[[Category: Galaxea fascicularis]]		[[Category: Galaxea fascicularis]]
	[[Category: Ebisawa, T.]]		[[Category: Ebisawa, T.]]
Line 34:		Line 29:
	[[Category: Fluorescent protein]]		[[Category: Fluorescent protein]]
	[[Category: Green emission]]		[[Category: Green emission]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:34:27 2010''

OCA at 06:34, 20 May 2010

OCA — Thu, 20 May 2010 06:34:28 GMT

←Older revision		Revision as of 06:34, 20 May 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3adf.jpg\|left\|200px]]

-	The ~~entry 3adf~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3adf", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3adf\| PDB=3adf \| SCENE= }}

-	~~Authors: Ebisawa~~, ~~T., Yamamura, A., Kameda, Y., Hayakawa, K., Nagata, K., Tanokura, M.~~	+	===Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)===

-	Description: Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Feb 17 10~~:06:17 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20445241}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20445241 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20445241}}
		+
		+	==About this Structure==
		+	3ADF is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Galaxea_fascicularis Galaxea fascicularis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ADF OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20445241</ref><references group="xtra"/>
		+	[[Category: Galaxea fascicularis]]
		+	[[Category: Ebisawa, T.]]
		+	[[Category: Hayakawa, K.]]
		+	[[Category: Kameda, Y.]]
		+	[[Category: Nagata, K.]]
		+	[[Category: Tanokura, M.]]
		+	[[Category: Yamamura, A.]]
		+	[[Category: Beta-barrel]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Green emission]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 20 09:34:27 2010''

OCA at 08:06, 17 February 2010

OCA — Wed, 17 Feb 2010 08:06:17 GMT

←Older revision		Revision as of 08:06, 17 February 2010
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3adf is ON HOLD	+	The entry 3adf is ON HOLD until Paper Publication

	Authors: Ebisawa, T., Yamamura, A., Kameda, Y., Hayakawa, K., Nagata, K., Tanokura, M.		Authors: Ebisawa, T., Yamamura, A., Kameda, Y., Hayakawa, K., Nagata, K., Tanokura, M.
Line 7:		Line 7:
	Description: Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)		Description: Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 27 19~~:11:32 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 17 10:06:17 2010''