3af5 - Revision history

OCA at 14:00, 13 March 2024

OCA — Wed, 13 Mar 2024 14:00:27 GMT

←Older revision		Revision as of 14:00, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='3af5' size='340' side='right'caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3af5' size='340' side='right'caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii~~ Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3af6\|3af6]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">PH1404 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [https://pdbe.org/3af5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [https://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [https://pdbe.org/3af5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [https://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O50112_PYRHO O50112_PYRHO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Pyrococcus horikoshii]]	+	[[Category: Pyrococcus horikoshii OT3]]
-	[[Category: Ishikawa, H]]	+	[[Category: Ishikawa H]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Kuramitsu S]]
-	[[Category: Masui, R]]	+	[[Category: Masui R]]
-	[[Category: Nakagawa, N]]	+	[[Category: Nakagawa N]]
-	[[Category: Nishida, Y]]	+	[[Category: Nishida Y]]
-	~~[[Category: Archaea]]~~	+
-	~~[[Category: Archaeal cpsf]]~~	+
-	~~[[Category: Beta-casp family]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Kh domain]]~~	+
-	~~[[Category: Metallo-beta-lactamase superfamily]]~~	+
-	~~[[Category: Ribonuclease~~]]	+

OCA at 16:26, 22 December 2021

OCA — Wed, 22 Dec 2021 16:26:14 GMT

←Older revision		Revision as of 16:26, 22 December 2021
Line 1:		Line 1:

	==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii==		==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii==
-	<StructureSection load='3af5' size='340' side='right' caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='3af5' size='340' side='right'caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3af6\|3af6]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3af6\|3af6]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [~~http~~://pdbe.org/3af5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [https://pdbe.org/3af5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [https://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]

OCA at 08:07, 24 October 2018

OCA — Wed, 24 Oct 2018 08:07:46 GMT

←Older revision		Revision as of 08:07, 24 October 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/3af5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/3af5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:21, 18 October 2016

OCA — Tue, 18 Oct 2016 07:21:02 GMT

←Older revision		Revision as of 07:21, 18 October 2016
Line 3:		Line 3:
	<StructureSection load='3af5' size='340' side='right' caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3af5' size='340' side='right' caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrho Pyrho~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3af6\|3af6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3af6\|3af6]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 ~~PYRHO~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [http://pdbe.org/3af5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [http://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [http://pdbe.org/3af5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [http://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>
	</table>		</table>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrho~~]]	+	[[Category: Pyrococcus horikoshii]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
Line 33:		Line 33:
	[[Category: Kh domain]]		[[Category: Kh domain]]
	[[Category: Metallo-beta-lactamase superfamily]]		[[Category: Metallo-beta-lactamase superfamily]]
-	[[Category: Pyrococcus horikoshii]]
	[[Category: Ribonuclease]]		[[Category: Ribonuclease]]

OCA at 08:47, 11 August 2016

OCA — Thu, 11 Aug 2016 08:47:02 GMT

←Older revision		Revision as of 08:47, 11 August 2016
Line 1:		Line 1:
		+
	==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii==		==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii==
	<StructureSection load='3af5' size='340' side='right' caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3af5' size='340' side='right' caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrho Pyrho]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3af6\|3af6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3af6\|3af6]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~53953 Pyrococcus horikoshii~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 PYRHO])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [http://www.ebi.ac.uk/pdbsum/3af5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [http://pdbe.org/3af5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [http://www.ebi.ac.uk/pdbsum/3af5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3af5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3af5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrococcus horikoshii~~]]	+	[[Category: Pyrho]]
	[[Category: Ishikawa, H]]		[[Category: Ishikawa, H]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
Line 32:		Line 33:
	[[Category: Kh domain]]		[[Category: Kh domain]]
	[[Category: Metallo-beta-lactamase superfamily]]		[[Category: Metallo-beta-lactamase superfamily]]
		+	[[Category: Pyrococcus horikoshii]]
	[[Category: Ribonuclease]]		[[Category: Ribonuclease]]

OCA at 10:00, 25 January 2015

OCA — Sun, 25 Jan 2015 10:00:51 GMT

←Older revision		Revision as of 10:00, 25 January 2015
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
-	[[Category: Ishikawa, H.]]	+	[[Category: Ishikawa, H]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Masui, R.]]	+	[[Category: Masui, R]]
-	[[Category: Nakagawa, N.]]	+	[[Category: Nakagawa, N]]
-	[[Category: Nishida, Y.]]	+	[[Category: Nishida, Y]]
	[[Category: Archaea]]		[[Category: Archaea]]
	[[Category: Archaeal cpsf]]		[[Category: Archaeal cpsf]]
Line 32:		Line 32:
	[[Category: Kh domain]]		[[Category: Kh domain]]
	[[Category: Metallo-beta-lactamase superfamily]]		[[Category: Metallo-beta-lactamase superfamily]]
-	[[Category: Pyrococcus horikoshii]]
	[[Category: Ribonuclease]]		[[Category: Ribonuclease]]

OCA at 11:59, 29 October 2014

OCA — Wed, 29 Oct 2014 11:59:30 GMT

←Older revision		Revision as of 11:59, 29 October 2014
Line 1:		Line 1:
-	~~[[Image:3af5.png\|left\|200px]]~~	+	==The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii==
-		+	<StructureSection load='3af5' size='340' side='right' caption='[[3af5]], [[Resolution\|resolution]] 2.60Å' scene=''>
-	~~{{STRUCTURE_3af5\| PDB=3af5 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AF5 FirstGlance]. <br>
-	===The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3af6\|3af6]]</td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PH1404 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3af5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3af5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3af5 RCSB], [http://www.ebi.ac.uk/pdbsum/3af5 PDBsum]</span></td></tr>
-	[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA].	+	</table>
-		+	== Evolutionary Conservation ==
-	==~~Reference~~==	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~020544974~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/3af5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Ishikawa, H.]]		[[Category: Ishikawa, H.]]

OCA at 19:00, 7 January 2013

OCA — Mon, 07 Jan 2013 19:00:37 GMT

←Older revision		Revision as of 19:00, 7 January 2013
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	[[Image:3af5.png\|left\|200px]]		[[Image:3af5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3af5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3af5\| PDB=3af5 \| SCENE= }}		{{STRUCTURE_3af5\| PDB=3af5 \| SCENE= }}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20544974~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020544974</ref><references group="xtra"/>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Ishikawa, H.]]		[[Category: Ishikawa, H.]]

OCA: Protected "3af5" [edit=sysop:move=sysop]

OCA — Sun, 02 Jan 2011 03:14:56 GMT

Protected "3af5" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:14, 2 January 2011

OCA at 03:14, 2 January 2011

OCA — Sun, 02 Jan 2011 03:14:55 GMT

←Older revision		Revision as of 03:14, 2 January 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3af5.png\|left\|200px]]		[[Image:3af5.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~3AF5~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA].	+	[[3af5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AF5 OCA].

	==Reference==		==Reference==
Line 32:		Line 31:
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Ribonuclease]]		[[Category: Ribonuclease]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:20:38 2010''