3amo - Revision history

OCA at 15:49, 4 October 2023

OCA — Wed, 04 Oct 2023 15:49:22 GMT

←Older revision		Revision as of 15:49, 4 October 2023
Line 3:		Line 3:
	<StructureSection load='3amo' size='340' side='right'caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3amo' size='340' side='right'caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter~~ globiformis~~" (conn 1928) bergey et al. 1930~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AMO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AMO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max-height: 3em;~~'>~~[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [https://pdbe.org/3amo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [https://www.ebi.ac.uk/pdbsum/3amo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3amo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [https://pdbe.org/3amo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [https://www.ebi.ac.uk/pdbsum/3amo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3amo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PAOX_ARTGO PAOX_ARTGO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arthrobacter globiformis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Primary-amine oxidase]]~~	+	[[Category: Kataoka M]]
-	[[Category: Kataoka, M]]	+	[[Category: Okajima T]]
-	[[Category: Okajima, T]]	+	[[Category: Otsu M]]
-	[[Category: Otsu, M]]	+	[[Category: Oya H]]
-	[[Category: Oya, H]]	+	[[Category: Tanizawa K]]
-	[[Category: Tanizawa, K]]	+	[[Category: Tominaga A]]
-	[[Category: Tominaga, A]]	+	[[Category: Yamaguchi H]]
-	[[Category: Yamaguchi, H]]	+
-	~~[[Category: Amine oxidase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Phenylethylamine]]~~	+
-	~~[[Category: Product schiff-base]]~~	+
-	~~[[Category: Reaction intermediate]]~~	+
-	~~[[Category: Substrate schiff-base]]~~	+
-	~~[[Category: Topaquinone]]~~	+
-	~~[[Category: Tpq]]~~	+
-	~~[[Category: Tpq biogenesis~~]]	+

OCA at 14:57, 29 December 2021

OCA — Wed, 29 Dec 2021 14:57:39 GMT

←Older revision		Revision as of 14:57, 29 December 2021
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	<StructureSection load='3amo' size='340' side='right'caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3amo' size='340' side='right'caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3AMO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AMO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [~~http~~://pdbe.org/3amo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3amo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3amo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [https://pdbe.org/3amo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [https://www.ebi.ac.uk/pdbsum/3amo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3amo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 3amo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3amo" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Copper amine oxidase 3D structures\|Copper amine oxidase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:47, 31 July 2019

OCA — Wed, 31 Jul 2019 07:47:54 GMT

←Older revision		Revision as of 07:47, 31 July 2019
Line 1:		Line 1:

	==Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis==		==Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis==
-	<StructureSection load='3amo' size='340' side='right' caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3amo' size='340' side='right'caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>		<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Primary-amine oxidase]]		[[Category: Primary-amine oxidase]]
	[[Category: Kataoka, M]]		[[Category: Kataoka, M]]

OCA at 19:05, 5 August 2016

OCA — Fri, 05 Aug 2016 19:05:47 GMT

←Older revision		Revision as of 19:05, 5 August 2016
Line 1:		Line 1:
		+
	==Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis==		==Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis==
	<StructureSection load='3amo' size='340' side='right' caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3amo' size='340' side='right' caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arthrobacter_globiformis Arthrobacter~~ globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [http://www.ebi.ac.uk/pdbsum/3amo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [http://pdbe.org/3amo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [http://www.ebi.ac.uk/pdbsum/3amo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3amo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 17:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3amo" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Arthrobacter globiformis]]
	[[Category: Primary-amine oxidase]]		[[Category: Primary-amine oxidase]]
	[[Category: Kataoka, M]]		[[Category: Kataoka, M]]

OCA at 21:54, 3 January 2015

OCA — Sat, 03 Jan 2015 21:54:50 GMT

←Older revision		Revision as of 21:54, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>		<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [http://www.ebi.ac.uk/pdbsum/3amo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [http://www.ebi.ac.uk/pdbsum/3amo PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 15:		Line 15:
	Detection of the reaction intermediates catalyzed by a copper amine oxidase.,Kataoka M, Oya H, Tominaga A, Otsu M, Okajima T, Tanizawa K, Yamaguchi H J Synchrotron Radiat. 2011 Jan;18(1):58-61. Epub 2010 Nov 5. PMID:21169693<ref>PMID:21169693</ref>		Detection of the reaction intermediates catalyzed by a copper amine oxidase.,Kataoka M, Oya H, Tominaga A, Otsu M, Okajima T, Tanizawa K, Yamaguchi H J Synchrotron Radiat. 2011 Jan;18(1):58-61. Epub 2010 Nov 5. PMID:21169693<ref>PMID:21169693</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 23:		Line 23:
	[[Category: Arthrobacter globiformis]]		[[Category: Arthrobacter globiformis]]
	[[Category: Primary-amine oxidase]]		[[Category: Primary-amine oxidase]]
-	[[Category: Kataoka, M.]]	+	[[Category: Kataoka, M]]
-	[[Category: Okajima, T.]]	+	[[Category: Okajima, T]]
-	[[Category: Otsu, M.]]	+	[[Category: Otsu, M]]
-	[[Category: Oya, H.]]	+	[[Category: Oya, H]]
-	[[Category: Tanizawa, K.]]	+	[[Category: Tanizawa, K]]
-	[[Category: Tominaga, A.]]	+	[[Category: Tominaga, A]]
-	[[Category: Yamaguchi, H.]]	+	[[Category: Yamaguchi, H]]
	[[Category: Amine oxidase]]		[[Category: Amine oxidase]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 11:07, 14 May 2014

OCA — Wed, 14 May 2014 11:07:11 GMT

←Older revision		Revision as of 11:07, 14 May 2014
Line 1:		Line 1:
-	[[~~Image:~~3amo.~~jpg~~\|~~left~~\|~~200px~~]]	+	==Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis==
		+	<StructureSection load='3amo' size='340' side='right' caption='[[3amo]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AMO FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1TY:3-{(3E)-4-HYDROXY-6-OXO-3-[(2-PHENYLETHYL)IMINO]CYCLOHEXA-1,4-DIEN-1-YL}ALANINE'>1TY</scene>, <scene name='pdbligand=2TY:2-HYDROXY-5-{[(1E)-2-PHENYLETHYLIDENE]AMINO}-L-TYROSINE'>2TY</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1av4\|1av4]], [[2cfd\|2cfd]], [[1iu7\|1iu7]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3amo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3amo RCSB], [http://www.ebi.ac.uk/pdbsum/3amo PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	To reveal the chemical changes and geometry changes of active-site residues that cooperate with a reaction is important for understanding the functional mechanism of proteins. Consecutive temporal analyses of enzyme structures have been performed during reactions to clarify structure-based reaction mechanisms. Phenylethylamine oxidase from Arthrobacter globiformis (AGAO) contains a copper ion and topaquinone (TPQ(ox)). The catalytic reaction of AGAO catalyzes oxidative deaminations of phenylethylamine and consists of reductive and oxidative half-reactions. In the reduction step, TPQ(ox) reacts with a phenylethylamine (PEA) substrate giving rise to a topasemiquinone (TPQ(sq)) formed Schiff-base and produces phenylacetaldehyde. To elucidate the mechanism of the reductive half-reaction, an attempt was made to trap the reaction intermediates in order to analyze their structures. The reaction proceeded within the crystals when AGAO crystals were soaked in a PEA solution and freeze-trapped in liquid nitrogen. The reaction stage of each crystal was confirmed by single-crystal microspectrometry, before X-ray diffraction measurements were made of four reaction intermediates. The structure at 15 min after the onset of the reaction was analyzed at atomic resolution, and it was shown that TPQ(ox) and some residues in the substrate channel were alternated via catalytic reductive half-reactions.

-	~~<!--~~	+	Detection of the reaction intermediates catalyzed by a copper amine oxidase.,Kataoka M, Oya H, Tominaga A, Otsu M, Okajima T, Tanizawa K, Yamaguchi H J Synchrotron Radiat. 2011 Jan;18(1):58-61. Epub 2010 Nov 5. PMID:21169693<ref>PMID:21169693</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_3amo"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_3amo\| PDB=3amo \| SCENE= }}~~	+

-	~~===Time-resolved X-ray Crystal Structure Analysis~~ of ~~Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_21169693}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 21169693 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_21169693}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3amo]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021169693<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Arthrobacter globiformis]]		[[Category: Arthrobacter globiformis]]
	[[Category: Primary-amine oxidase]]		[[Category: Primary-amine oxidase]]

OCA at 19:06, 23 November 2011

OCA — Wed, 23 Nov 2011 19:06:56 GMT

←Older revision		Revision as of 19:06, 23 November 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3amo.jpg\|left\|200px]]

-	The ~~entry 3amo~~ is ~~ON HOLD until sometime in~~ the ~~future~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3amo", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3amo\| PDB=3amo \| SCENE= }}

-	~~Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.~~	+	===Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis===

-	~~Description~~: ~~Time~~-~~resolved X~~-~~ray Crystal~~ Structure ~~Analysis of Enzymatic Reaction of Copper Amine Oxidase~~ from Arthrobacter globiformis	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21169693}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21169693 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21169693}}
		+
		+	==About this Structure==
		+	[[3amo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMO OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021169693</ref><references group="xtra"/>
		+	[[Category: Arthrobacter globiformis]]
		+	[[Category: Primary-amine oxidase]]
		+	[[Category: Kataoka, M.]]
		+	[[Category: Okajima, T.]]
		+	[[Category: Otsu, M.]]
		+	[[Category: Oya, H.]]
		+	[[Category: Tanizawa, K.]]
		+	[[Category: Tominaga, A.]]
		+	[[Category: Yamaguchi, H.]]
		+	[[Category: Amine oxidase]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Phenylethylamine]]
		+	[[Category: Product schiff-base]]
		+	[[Category: Reaction intermediate]]
		+	[[Category: Substrate schiff-base]]
		+	[[Category: Topaquinone]]
		+	[[Category: Tpq]]
		+	[[Category: Tpq biogenesis]]

OCA at 08:29, 30 October 2011

OCA — Sun, 30 Oct 2011 08:29:33 GMT

←Older revision		Revision as of 08:29, 30 October 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3amo is ON HOLD until ~~Oct 26 2012~~	+	The entry 3amo is ON HOLD until sometime in the future

	Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.		Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.

	Description: Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis		Description: Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis

OCA at 05:58, 5 October 2011

OCA — Wed, 05 Oct 2011 05:58:16 GMT

←Older revision		Revision as of 05:58, 5 October 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3amo is ON HOLD until ~~Sep 30~~ 2012	+	The entry 3amo is ON HOLD until Oct 26 2012

	Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.		Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.

	Description: Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis		Description: Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis

OCA at 05:20, 21 September 2011

OCA — Wed, 21 Sep 2011 05:20:49 GMT

←Older revision		Revision as of 05:20, 21 September 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3amo is ON HOLD until Sep 20 2012	+	The entry 3amo is ON HOLD until Sep 30 2012

	Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.		Authors: Kataoka, M., Oya, H., Tominaga, A., Otsu, M., Okajima, T., Tanizawa, K., Yamaguchi, H.

	Description: Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis		Description: Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis