3auo - Revision history

OCA at 15:56, 4 October 2023

OCA — Wed, 04 Oct 2023 15:56:29 GMT

←Older revision		Revision as of 15:56, 4 October 2023
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	<StructureSection load='3auo' size='340' side='right'caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='3auo' size='340' side='right'caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3auo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AUO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3auo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AUO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=DG3:2~~-~~3-DIDEOXYGUANOSINE-5-TRIPHOSPHATE'>DG3</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=DDG:2,3-DIDEOXY-GUANOSINE-5-MONOPHOSPHATE'>DDG</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DDG:2,3-DIDEOXY-GUANOSINE-5-MONOPHOSPHATE'>DDG</scene>, <scene name='pdbligand=DG3:2-3-DIDEOXYGUANOSINE-5-TRIPHOSPHATE'>DG3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max~~-~~height: 3em;~~'>~~[[3au2\|3au2]], [[3au6\|3au6]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></~~td><td class="sblockDat"~~>~~PolX~~, ~~TTHA1150 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [https://pdbe.org/3auo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [https://www.ebi.ac.uk/pdbsum/3auo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3auo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [https://pdbe.org/3auo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [https://www.ebi.ac.uk/pdbsum/3auo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3auo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5SJ64_THET8 Q5SJ64_THET8]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 3auo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3auo" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[DNA polymerase 3D structures\|DNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: DNA-directed DNA polymerase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thet8~~]]	+	[[Category: Thermus thermophilus HB8]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Kuramitsu S]]
-	[[Category: Masui, R]]	+	[[Category: Masui R]]
-	[[Category: Nakagawa, N]]	+	[[Category: Nakagawa N]]
-	[[Category: Nakane, S]]	+	[[Category: Nakane S]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: 3'-5' exonuclease]]~~	+
-	~~[[Category: Ap endonuclease]]~~	+
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Dna polymerase]]~~	+
-	~~[[Category: Dna repair]]~~	+
-	~~[[Category: Drp lyase]]~~	+
-	~~[[Category: Nucleotide binding]]~~	+
-	~~[[Category: Php domain]]~~	+
-	~~[[Category: Polxc domain]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Transferase-dna complex~~]]	+

OCA at 15:05, 29 December 2021

OCA — Wed, 29 Dec 2021 15:05:04 GMT

←Older revision		Revision as of 15:05, 29 December 2021
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	==DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP==		==DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP==
-	<StructureSection load='3auo' size='340' side='right' caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='3auo' size='340' side='right'caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3auo]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3AUO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3auo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AUO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DG3:2-3-DIDEOXYGUANOSINE-5-TRIPHOSPHATE'>DG3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DG3:2-3-DIDEOXYGUANOSINE-5-TRIPHOSPHATE'>DG3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DDG:2,3-DIDEOXY-GUANOSINE-5-MONOPHOSPHATE'>DDG</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DDG:2,3-DIDEOXY-GUANOSINE-5-MONOPHOSPHATE'>DDG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3au2\|3au2]], [[3au6\|3au6]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3au2\|3au2]], [[3au6\|3au6]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PolX, TTHA1150 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PolX, TTHA1150 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [~~http~~://pdbe.org/3auo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3auo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3auo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [https://pdbe.org/3auo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [https://www.ebi.ac.uk/pdbsum/3auo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3auo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 3auo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3auo" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[DNA polymerase\|DNA polymerase]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: DNA-directed DNA polymerase]]		[[Category: DNA-directed DNA polymerase]]
		+	[[Category: Large Structures]]
	[[Category: Thet8]]		[[Category: Thet8]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]

OCA at 07:58, 24 October 2018

OCA — Wed, 24 Oct 2018 07:58:54 GMT

←Older revision		Revision as of 07:58, 24 October 2018
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	[[Category: Nakagawa, N]]		[[Category: Nakagawa, N]]
	[[Category: Nakane, S]]		[[Category: Nakane, S]]
		+	[[Category: Structural genomic]]
	[[Category: 3'-5' exonuclease]]		[[Category: 3'-5' exonuclease]]
	[[Category: Ap endonuclease]]		[[Category: Ap endonuclease]]
Line 42:		Line 43:
	[[Category: Php domain]]		[[Category: Php domain]]
	[[Category: Polxc domain]]		[[Category: Polxc domain]]
-	[[Category: Structural genomic]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Transferase-dna complex]]		[[Category: Transferase-dna complex]]

OCA at 18:12, 11 August 2016

OCA — Thu, 11 Aug 2016 18:12:48 GMT

←Older revision		Revision as of 18:12, 11 August 2016
Line 1:		Line 1:
		+
	==DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP==		==DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP==
	<StructureSection load='3auo' size='340' side='right' caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='3auo' size='340' side='right' caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PolX, TTHA1150 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PolX, TTHA1150 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [http://www.ebi.ac.uk/pdbsum/3auo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [http://pdbe.org/3auo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [http://www.ebi.ac.uk/pdbsum/3auo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3auo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3auo" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 12:55, 5 January 2015

OCA — Mon, 05 Jan 2015 12:55:56 GMT

←Older revision		Revision as of 12:55, 5 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3auo~~\| ~~PDB~~=3auo \| ~~SCENE~~= }}	+	==DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP==
-	===DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP~~===~~	+	<StructureSection load='3auo' size='340' side='right' caption='[[3auo]], [[Resolution\|resolution]] 2.70Å' scene=''>
-	~~{{ABSTRACT_PUBMED_22306405}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3auo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AUO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DG3:2-3-DIDEOXYGUANOSINE-5-TRIPHOSPHATE'>DG3</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DDG:2,3-DIDEOXY-GUANOSINE-5-MONOPHOSPHATE'>DDG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3au2\|3au2]], [[3au6\|3au6]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PolX, TTHA1150 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3auo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3auo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3auo RCSB], [http://www.ebi.ac.uk/pdbsum/3auo PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	DNA with single-nucleotide (1-nt) gaps can arise during various DNA processing events. These lesions are repaired by X-family DNA polymerases (PolXs) with high gap-filling activity. Some PolXs can bind productively to dNTPs in the absence of DNA and fill these 1-nt gaps. Although PolXs have a crucial role in efficient gap filling, currently, little is known of the kinetic and structural details of their productive dNTP binding. Here, we show that Thermus thermophilus HB8 PolX (ttPolX) had strong binding affinity for Mg(2+)-dNTPs in the absence of DNA and that it follows a Theorell-Chance (hit-and-run) mechanism with nucleotide binding first. Comparison of the intermediate crystal structures of ttPolX in a binary complex with dGTP and in a ternary complex with 1-nt gapped DNA and Mg(2+)-ddGTP revealed that the conformation of the incoming nucleotide depended on whether or not DNA was present. Furthermore, the Lys263 residue located between two guanosine conformations was essential to the strong binding affinity of the enzyme. The ability to bind to either syn-dNTP or anti-dNTP and the involvement of a Theorell-Chance mechanism are key aspects of the strong nucleotide-binding and efficient gap-filling activities of ttPolX.

-	~~==About this Structure==~~	+	The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.,Nakane S, Ishikawa H, Nakagawa N, Kuramitsu S, Masui R J Mol Biol. 2012 Mar 30;417(3):179-96. Epub 2012 Jan 27. PMID:22306405<ref>PMID:22306405</ref>
-	~~[[3auo]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thet8 Thet8]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3AUO OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[DNA polymerase\|DNA polymerase]]		*[[DNA polymerase\|DNA polymerase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:022306405</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: DNA-directed DNA polymerase]]		[[Category: DNA-directed DNA polymerase]]
	[[Category: Thet8]]		[[Category: Thet8]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Masui, R.]]	+	[[Category: Masui, R]]
-	[[Category: Nakagawa, N.]]	+	[[Category: Nakagawa, N]]
-	[[Category: Nakane, S.]]	+	[[Category: Nakane, S]]
	[[Category: 3'-5' exonuclease]]		[[Category: 3'-5' exonuclease]]
	[[Category: Ap endonuclease]]		[[Category: Ap endonuclease]]
Line 26:		Line 40:
	[[Category: Php domain]]		[[Category: Php domain]]
	[[Category: Polxc domain]]		[[Category: Polxc domain]]
-	[[Category: Riken structural genomics/proteomics initiative]]
-	[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Rsgi]]
	[[Category: Transferase-dna complex]]		[[Category: Transferase-dna complex]]

OCA at 08:45, 25 December 2013

OCA — Wed, 25 Dec 2013 08:45:13 GMT

←Older revision		Revision as of 08:45, 25 December 2013
Line 1:		Line 1:
-	[[Image:3auo.png\|left\|200px]]
-
	{{STRUCTURE_3auo\| PDB=3auo \| SCENE= }}		{{STRUCTURE_3auo\| PDB=3auo \| SCENE= }}
-
	===DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP===		===DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP===
-		+	{{ABSTRACT_PUBMED_22306405}}

	==About this Structure==		==About this Structure==
-	[[3auo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].	+	[[3auo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].

	==See Also==		==See Also==
	*[[DNA polymerase\|DNA polymerase]]		*[[DNA polymerase\|DNA polymerase]]
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022306405</ref><references group="xtra"/><references/>
	[[Category: DNA-directed DNA polymerase]]		[[Category: DNA-directed DNA polymerase]]
-	[[Category: ~~Thermus thermophilus~~]]	+	[[Category: Thet8]]
	[[Category: Kuramitsu, S.]]		[[Category: Kuramitsu, S.]]
	[[Category: Masui, R.]]		[[Category: Masui, R.]]

OCA at 12:57, 20 October 2012

OCA — Sat, 20 Oct 2012 12:57:58 GMT

←Older revision		Revision as of 12:57, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3auo]] is a 4 chain structure ~~of [[DNA polymerase]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].	+	[[3auo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].

	==See Also==		==See Also==

OCA at 10:28, 26 July 2012

OCA — Thu, 26 Jul 2012 10:28:31 GMT

←Older revision		Revision as of 10:28, 26 July 2012
Line 1:		Line 1:
	[[Image:3auo.png\|left\|200px]]		[[Image:3auo.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3auo", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3auo\| PDB=3auo \| SCENE= }}		{{STRUCTURE_3auo\| PDB=3auo \| SCENE= }}

Line 13:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3auo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].	+	[[3auo]] is a 4 chain structure of [[DNA polymerase]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].
		+
		+	==See Also==
		+	*[[DNA polymerase\|DNA polymerase]]
	[[Category: DNA-directed DNA polymerase]]		[[Category: DNA-directed DNA polymerase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA at 07:26, 1 February 2012

OCA — Wed, 01 Feb 2012 07:26:02 GMT

←Older revision		Revision as of 07:26, 1 February 2012
Line 1:		Line 1:
-	[[Image:3auo.~~jpg~~\|left\|200px]]	+	[[Image:3auo.png\|left\|200px]]

	<!--		<!--

OCA at 06:38, 25 January 2012

OCA — Wed, 25 Jan 2012 06:38:42 GMT

←Older revision		Revision as of 06:38, 25 January 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3auo.jpg\|left\|200px]]

-	The ~~entry 3auo~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3auo", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3auo\| PDB=3auo \| SCENE= }}

-	~~Authors: Nakane, S., Nakagawa, N., Masui, R., Kuramitsu, S.~~	+	===DNA polymerase X from Thermus thermophilus HB8 ternary complex with 1-nt gapped DNA and ddGTP===

-	~~Description~~: DNA polymerase ~~X from~~ Thermus thermophilus ~~HB8 ternary complex with 1~~-~~nt gapped DNA and ddGTP~~	+
		+	==About this Structure==
		+	[[3auo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AUO OCA].
		+	[[Category: DNA-directed DNA polymerase]]
		+	[[Category: Thermus thermophilus]]
		+	[[Category: Kuramitsu, S.]]
		+	[[Category: Masui, R.]]
		+	[[Category: Nakagawa, N.]]
		+	[[Category: Nakane, S.]]
		+	[[Category: 3'-5' exonuclease]]
		+	[[Category: Ap endonuclease]]
		+	[[Category: Dna binding]]
		+	[[Category: Dna polymerase]]
		+	[[Category: Dna repair]]
		+	[[Category: Drp lyase]]
		+	[[Category: Nucleotide binding]]
		+	[[Category: Php domain]]
		+	[[Category: Polxc domain]]
		+	[[Category: Riken structural genomics/proteomics initiative]]
		+	[[Category: Rsgi]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transferase-dna complex]]