3b6n - Revision history

OCA at 12:02, 30 August 2023

OCA — Wed, 30 Aug 2023 12:02:33 GMT

←Older revision		Revision as of 12:02, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3b6n' size='340' side='right'caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>		<StructureSection load='3b6n' size='340' side='right'caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Plavs Plavs~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B6N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_vivax_Sal-1 Plasmodium vivax Sal-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B6N FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.26Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>PV003920, PVX_003920 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~126793 PLAVS])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>[https://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [https://pdbe.org/3b6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [https://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b6n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [https://pdbe.org/3b6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [https://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b6n ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A5KBP6_PLAVS A5KBP6_PLAVS]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Plavs~~]]	+	[[Category: Plasmodium vivax Sal-1]]
-	[[Category: Arrowsmith~~, C H~~]]	+	[[Category: Arrowsmith CH]]
-	[[Category: Artz~~, J D~~]]	+	[[Category: Artz JD]]
-	[[Category: Bochkarev, A]]	+	[[Category: Bochkarev A]]
-	[[Category: Edwards~~, A M~~]]	+	[[Category: Edwards AM]]
-	[[Category: Hui, R]]	+	[[Category: Hui R]]
-	[[Category: Khuu, C]]	+	[[Category: Khuu C]]
-	[[Category: Kozieradzki, I]]	+	[[Category: Kozieradzki I]]
-	[[Category: Lew, J]]	+	[[Category: Lew J]]
-	[[Category: Lin~~, Y H]]~~	+	[[Category: Lin YH]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Schapira M]]
-	[[Category: Schapira, M]]	+	[[Category: Sun X]]
-	[[Category: Sun, X]]	+	[[Category: Weigelt J]]
-	[[Category: Weigelt, J]]	+	[[Category: Wernimont AK]]
-	[[Category: Wernimont~~, A K~~]]	+	[[Category: Xiao T]]
-	[[Category: Xiao, T]]	+	[[Category: Zhao Y]]
-	[[Category: Zhao, Y]]	+
-	~~[[Category: Isoprene biosynthesis]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Malaria isoprenoid biosynthesis and prenylation pathways ispf]]~~	+
-	~~[[Category: Sgc~~]]	+

OCA at 11:25, 5 January 2022

OCA — Wed, 05 Jan 2022 11:25:18 GMT

←Older revision		Revision as of 11:25, 5 January 2022
Line 1:		Line 1:

	==Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax==		==Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax==
-	<StructureSection load='3b6n' size='340' side='right' caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>	+	<StructureSection load='3b6n' size='340' side='right'caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Plavs Plavs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3B6N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plavs Plavs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B6N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=126793 PLAVS])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=126793 PLAVS])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [~~http~~://pdbe.org/3b6n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3b6n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [https://pdbe.org/3b6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [https://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b6n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b6/3b6n_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b6/3b6n_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]		[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
		+	[[Category: Large Structures]]
	[[Category: Plavs]]		[[Category: Plavs]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]

OCA at 18:28, 11 August 2016

OCA — Thu, 11 Aug 2016 18:28:43 GMT

←Older revision		Revision as of 18:28, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax==		==Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax==
	<StructureSection load='3b6n' size='340' side='right' caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>		<StructureSection load='3b6n' size='340' side='right' caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Eukaryota Eukaryota~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B6N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Plavs Plavs]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B6N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~2759 Eukaryota~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=126793 PLAVS])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [http://pdbe.org/3b6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3b6n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b6n ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]		[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
-	[[Category: ~~Eukaryota~~]]	+	[[Category: Plavs]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]
	[[Category: Artz, J D]]		[[Category: Artz, J D]]

OCA at 08:40, 20 January 2015

OCA — Tue, 20 Jan 2015 08:40:11 GMT

←Older revision		Revision as of 08:40, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B6N FirstGlance]. <br>		<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B6N FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]		[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
	[[Category: Eukaryota]]		[[Category: Eukaryota]]
-	[[Category: Arrowsmith, C H.]]	+	[[Category: Arrowsmith, C H]]
-	[[Category: Artz, J D.]]	+	[[Category: Artz, J D]]
-	[[Category: Bochkarev, A.]]	+	[[Category: Bochkarev, A]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Hui, R.]]	+	[[Category: Hui, R]]
-	[[Category: Khuu, C.]]	+	[[Category: Khuu, C]]
-	[[Category: Kozieradzki, I.]]	+	[[Category: Kozieradzki, I]]
-	[[Category: Lew, J.]]	+	[[Category: Lew, J]]
-	[[Category: Lin, Y H.]]	+	[[Category: Lin, Y H]]
-	[[Category: ~~SGC,~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Schapira, M.]]	+	[[Category: Schapira, M]]
-	[[Category: Sun, X.]]	+	[[Category: Sun, X]]
-	[[Category: Weigelt, J.]]	+	[[Category: Weigelt, J]]
-	[[Category: Wernimont, A K.]]	+	[[Category: Wernimont, A K]]
-	[[Category: Xiao, T.]]	+	[[Category: Xiao, T]]
-	[[Category: Zhao, Y.]]	+	[[Category: Zhao, Y]]
	[[Category: Isoprene biosynthesis]]		[[Category: Isoprene biosynthesis]]
	[[Category: Lyase]]		[[Category: Lyase]]
	[[Category: Malaria isoprenoid biosynthesis and prenylation pathways ispf]]		[[Category: Malaria isoprenoid biosynthesis and prenylation pathways ispf]]
	[[Category: Sgc]]		[[Category: Sgc]]
-	[[Category: Structural genomic]]
-	[[Category: Structural genomics consortium]]

OCA at 05:12, 2 October 2014

OCA — Thu, 02 Oct 2014 05:12:22 GMT

←Older revision		Revision as of 05:12, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3b6n.png\|left\|200px]]~~	+	==Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax==
-		+	<StructureSection load='3b6n' size='340' side='right' caption='[[3b6n]], [[Resolution\|resolution]] 2.26Å' scene=''>
-	~~{{STRUCTURE_3b6n\| PDB=3b6n \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B6N FirstGlance]. <br>
-	===Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum]</span></td></tr>
-	[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b6/3b6n_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]		[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
	[[Category: Eukaryota]]		[[Category: Eukaryota]]

OCA: Protected "3b6n" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:07:05 GMT

Protected "3b6n" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:07, 7 January 2013

OCA at 21:07, 7 January 2013

OCA — Mon, 07 Jan 2013 21:07:01 GMT

←Older revision		Revision as of 21:07, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3b6n.png\|left\|200px]]		[[Image:3b6n.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3b6n", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3b6n\| PDB=3b6n \| SCENE= }}		{{STRUCTURE_3b6n\| PDB=3b6n \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3B6N~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA].	+	[[3b6n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA].
	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]		[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
	[[Category: Eukaryota]]		[[Category: Eukaryota]]
Line 39:		Line 32:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Structural genomics consortium]]		[[Category: Structural genomics consortium]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:36:37 2009''

OCA at 15:36, 17 February 2009

OCA — Tue, 17 Feb 2009 15:36:38 GMT

←Older revision		Revision as of 15:36, 17 February 2009
Line 1:		Line 1:
-	[[Image:3b6n.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:3b6n.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_3b6n\| PDB=3b6n \| SCENE= }}		{{STRUCTURE_3b6n\| PDB=3b6n \| SCENE= }}

-	~~'''~~Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax~~'''~~	+	===Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax===


	==About this Structure==		==About this Structure==
-	3B6N is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA].	+	3B6N is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B6N OCA].
	[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]		[[Category: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase]]
	[[Category: Eukaryota]]		[[Category: Eukaryota]]
-	[[Category: Single protein]]
	[[Category: Arrowsmith, C H.]]		[[Category: Arrowsmith, C H.]]
	[[Category: Artz, J D.]]		[[Category: Artz, J D.]]
Line 39:		Line 39:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Structural genomics consortium]]		[[Category: Structural genomics consortium]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 20~~:26:~~45 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:36:37 2009''

OCA at 17:26, 4 May 2008

OCA — Sun, 04 May 2008 17:26:46 GMT

←Older revision		Revision as of 17:26, 4 May 2008
Line 1:		Line 1:
	[[Image:3b6n.gif\|left\|200px]]		[[Image:3b6n.gif\|left\|200px]]

-	~~{{Structure~~	+	<!--
-	~~\|PDB= 3b6n \|SIZE=350\|CAPTION=~~ <~~scene name='initialview01'>3b6n</scene>, resolution 2.26Å~~	+	The line below this paragraph, containing "STRUCTURE_3b6n", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	~~\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/2~~-C-~~methyl-D-erythritol_2~~,~~4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2~~,~~4-cyclodiphosphate synthase], with EC number [http://www~~.~~brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span>~~	+	or leave the SCENE parameter empty for the default display.
-	~~\|GENE= PV003920, PVX_003920~~ (~~[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota]~~)	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_3b6n\| PDB=3b6n \| SCENE= }}
-	~~\|RELATEDENTRY=~~	+
-	~~\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca~~-~~docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca~~-~~bin/ocaids?id~~=3b6n ~~OCA], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId~~=~~3b6n RCSB]</span>~~	+
-	}}	+

	'''Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax'''		'''Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax'''
Line 36:		Line 33:
	[[Category: Xiao, T.]]		[[Category: Xiao, T.]]
	[[Category: Zhao, Y.]]		[[Category: Zhao, Y.]]
-	[[Category: ~~isoprene~~ biosynthesis]]	+	[[Category: Isoprene biosynthesis]]
-	[[Category: ~~lyase~~]]	+	[[Category: Lyase]]
-	[[Category: ~~malaria~~ isoprenoid biosynthesis and prenylation pathways ispf]]	+	[[Category: Malaria isoprenoid biosynthesis and prenylation pathways ispf]]
-	[[Category: ~~sgc~~]]	+	[[Category: Sgc]]
-	[[Category: ~~structural~~ genomic]]	+	[[Category: Structural genomic]]
-	[[Category: ~~structural~~ genomics consortium]]	+	[[Category: Structural genomics consortium]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 20:26:45 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 05~~:23:33 2008''	+

OCA at 02:23, 31 March 2008

OCA — Mon, 31 Mar 2008 02:23:36 GMT

←Older revision		Revision as of 02:23, 31 March 2008
Line 4:		Line 4:
	\|PDB= 3b6n \|SIZE=350\|CAPTION= <scene name='initialview01'>3b6n</scene>, resolution 2.26Å		\|PDB= 3b6n \|SIZE=350\|CAPTION= <scene name='initialview01'>3b6n</scene>, resolution 2.26Å
	\|SITE=		\|SITE=
-	\|LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene>	+	\|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
-	\|ACTIVITY= [http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12]	+	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/2-C-methyl-D-erythritol_2,4-cyclodiphosphate_synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.12 4.6.1.12] </span>
	\|GENE= PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota])		\|GENE= PV003920, PVX_003920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2759 Eukaryota])
		+	\|DOMAIN=
		+	\|RELATEDENTRY=
		+	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b6n OCA], [http://www.ebi.ac.uk/pdbsum/3b6n PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3b6n RCSB]</span>
	}}		}}

Line 33:		Line 36:
	[[Category: Xiao, T.]]		[[Category: Xiao, T.]]
	[[Category: Zhao, Y.]]		[[Category: Zhao, Y.]]
-	[[Category: ZN]]
	[[Category: isoprene biosynthesis]]		[[Category: isoprene biosynthesis]]
	[[Category: lyase]]		[[Category: lyase]]
Line 41:		Line 43:
	[[Category: structural genomics consortium]]		[[Category: structural genomics consortium]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Mar ~~20 18~~:56:31 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:23:33 2008''