3bat - Revision history

OCA at 12:05, 30 August 2023

OCA — Wed, 30 Aug 2023 12:05:47 GMT

←Older revision		Revision as of 12:05, 30 August 2023
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	<StructureSection load='3bat' size='340' side='right'caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3bat' size='340' side='right'caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Argir Argir~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BAT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Argopecten_irradians Argopecten irradians] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BAT FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[3bas\|3bas]], [[1nkn\|1nkn]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=31199 ARGIR])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [https://pdbe.org/3bat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [https://www.ebi.ac.uk/pdbsum/3bat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bat ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [https://pdbe.org/3bat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [https://www.ebi.ac.uk/pdbsum/3bat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bat ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MYS_ARGIR MYS_ARGIR]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.	+	[https://www.uniprot.org/uniprot/GCN4_YEAST GCN4_YEAST] Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'.[https://www.uniprot.org/uniprot/MYS_ARGIR MYS_ARGIR] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 30:

	==See Also==		==See Also==
		+	*[[Gcn4 3D Structures\|Gcn4 3D Structures]]
	*[[Gnc4 3D Structures\|Gnc4 3D Structures]]		*[[Gnc4 3D Structures\|Gnc4 3D Structures]]
	*[[Myosin 3D Structures\|Myosin 3D Structures]]		*[[Myosin 3D Structures\|Myosin 3D Structures]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Argir~~]]	+	[[Category: Argopecten irradians]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Brown, J H~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: ~~Cohen, C~~]]	+	[[Category: Brown JH]]
-	[[Category: ~~Actin-binding]]~~	+	[[Category: Cohen C]]
-	~~[[Category: Alpha-helical coiled coil]]~~	+
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Calmodulin-binding]]~~	+
-	~~[[Category: Contractile protein]]~~	+
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Disorder]]~~	+
-	~~[[Category: Motor protein]]~~	+
-	~~[[Category: Muscle protein]]~~	+
-	~~[[Category: Myosin]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: Salt link]]~~	+
-	~~[[Category: Thick filament~~]]	+

OCA at 11:29, 5 January 2022

OCA — Wed, 05 Jan 2022 11:29:41 GMT

←Older revision		Revision as of 11:29, 5 January 2022
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	==Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form==		==Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form==
-	<StructureSection load='3bat' size='340' side='right' caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='3bat' size='340' side='right'caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Argir Argir]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3BAT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Argir Argir]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BAT FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bas\|3bas]], [[1nkn\|1nkn]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=31199 ARGIR])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=31199 ARGIR])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [~~http~~://pdbe.org/3bat PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3bat PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3bat ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [https://pdbe.org/3bat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [https://www.ebi.ac.uk/pdbsum/3bat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bat ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MYS_ARGIR MYS_ARGIR]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.	+	[[https://www.uniprot.org/uniprot/MYS_ARGIR MYS_ARGIR]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/3bat_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/3bat_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 3bat" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3bat" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Gnc4 3D Structures\|Gnc4 3D Structures]]
		+	*[[Myosin 3D Structures\|Myosin 3D Structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Argir]]		[[Category: Argir]]
		+	[[Category: Large Structures]]
	[[Category: Brown, J H]]		[[Category: Brown, J H]]
	[[Category: Cohen, C]]		[[Category: Cohen, C]]

OCA at 07:59, 25 October 2017

OCA — Wed, 25 Oct 2017 07:59:02 GMT

←Older revision		Revision as of 07:59, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form==		==Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form==
	<StructureSection load='3bat' size='340' side='right' caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3bat' size='340' side='right' caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>
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	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=31199 ARGIR])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=31199 ARGIR])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://pdbe.org/3bat PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://pdbe.org/3bat PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bat ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 3bat" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3bat" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Gcn4\|Gcn4]]
-	*[[Myosin\|Myosin]]
	== References ==		== References ==
	<references/>		<references/>
Line 44:		Line 41:
	[[Category: Calmodulin-binding]]		[[Category: Calmodulin-binding]]
	[[Category: Contractile protein]]		[[Category: Contractile protein]]
		+	[[Category: Cytoplasm]]
	[[Category: Disorder]]		[[Category: Disorder]]
	[[Category: Motor protein]]		[[Category: Motor protein]]

OCA at 09:39, 9 February 2016

OCA — Tue, 09 Feb 2016 09:39:37 GMT

←Older revision		Revision as of 09:39, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3bat' size='340' side='right' caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3bat' size='340' side='right' caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BAT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Argir Argir]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BAT FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~4932 Saccharomyces cerevisiae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=31199 ARGIR])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://pdbe.org/3bat PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~MYS_AEQIR MYS_AEQIR~~]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.	+	[[http://www.uniprot.org/uniprot/MYS_ARGIR MYS_ARGIR]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bat ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3bat" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Saccharomyces cerevisiae~~]]	+	[[Category: Argir]]
	[[Category: Brown, J H]]		[[Category: Brown, J H]]
	[[Category: Cohen, C]]		[[Category: Cohen, C]]

OCA at 06:01, 25 December 2014

OCA — Thu, 25 Dec 2014 06:01:38 GMT

←Older revision		Revision as of 06:01, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BAT FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BAT FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MYS_AEQIR MYS_AEQIR]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Brown, J H.]]	+	[[Category: Brown, J H]]
-	[[Category: Cohen, C.]]	+	[[Category: Cohen, C]]
	[[Category: Actin-binding]]		[[Category: Actin-binding]]
	[[Category: Alpha-helical coiled coil]]		[[Category: Alpha-helical coiled coil]]

OCA at 08:44, 29 September 2014

OCA — Mon, 29 Sep 2014 08:44:20 GMT

←Older revision		Revision as of 08:44, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3bat.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form==
		+	<StructureSection load='3bat' size='340' side='right' caption='[[3bat]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3bat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BAT FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bas\|3bas]], [[1nkn\|1nkn]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">-/GCN4, AAS3, ARG9, YEL009C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bat OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bat RCSB], [http://www.ebi.ac.uk/pdbsum/3bat PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/3bat_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The N-terminal region of myosin's rod-like subfragment 2 (S2) joins the two heads of this dimeric molecule and is key to its function. Previously, a crystal structure of this predominantly coiled-coil region was determined for a short fragment (51 residues plus a leucine zipper) of the scallop striated muscle myosin isoform. In that study, the N-terminal 10-14 residues were found to be disordered. We have now determined the structure of the same scallop peptide in three additional crystal environments. In each of two of these structures, improved order has allowed visualization of the entire N-terminus in one chain of the dimeric peptide. We have also compared the melting temperatures of this scallop S2 peptide with those of analogous peptides from three other isoforms. Taken together, these experiments, along with examination of sequences, point to a diminished stability of the N-terminal region of S2 in regulated myosins, compared with those myosins whose regulation is thin filament linked. It seems plain that this isoform-specific instability promotes the off-state conformation of the heads in regulated myosins. We also discuss how myosin isoforms with varied thermal stabilities share the basic capacity to transmit force efficiently in order to produce contraction in their on states.

-	~~{{STRUCTURE_3bat\| PDB=3bat \| SCENE= }}~~	+	An unstable head-rod junction may promote folding into the compact off-state conformation of regulated myosins.,Brown JH, Yang Y, Reshetnikova L, Gourinath S, Suveges D, Kardos J, Hobor F, Reutzel R, Nyitray L, Cohen C J Mol Biol. 2008 Feb 1;375(5):1434-43. Epub 2007 Nov 28. PMID:18155233<ref>PMID:18155233</ref>

-	~~===Crystal structure~~ of the ~~N-terminal region of the scallop myosin rod, monoclinic (P21) form===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18155233}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3bat]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA].~~	+

	==See Also==		==See Also==
		+	*[[Gcn4\|Gcn4]]
	*[[Myosin\|Myosin]]		*[[Myosin\|Myosin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:018155233<~~/~~ref~~><~~ref group="xtra">PMID:012867988</ref><ref group="xtra">PMID:017095604</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Brown, J H.]]		[[Category: Brown, J H.]]

OCA at 13:26, 20 October 2012

OCA — Sat, 20 Oct 2012 13:26:55 GMT

←Older revision		Revision as of 13:26, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3bat]] is a 4 chain structure ~~of [[Myosin]]~~ with sequence from [http://en.wikipedia.org/wiki/~~Argopecten_irradians,_saccharomyces_cerevisiae Argopecten irradians, saccharomyces~~ cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA].	+	[[3bat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA].

	==See Also==		==See Also==
Line 15:		Line 15:
	==Reference==		==Reference==
	<ref group="xtra">PMID:018155233</ref><ref group="xtra">PMID:012867988</ref><ref group="xtra">PMID:017095604</ref><references group="xtra"/>		<ref group="xtra">PMID:018155233</ref><ref group="xtra">PMID:012867988</ref><ref group="xtra">PMID:017095604</ref><references group="xtra"/>
-	[[Category: ~~Argopecten irradians, saccharomyces~~ cerevisiae]]	+	[[Category: Saccharomyces cerevisiae]]
	[[Category: Brown, J H.]]		[[Category: Brown, J H.]]
	[[Category: Cohen, C.]]		[[Category: Cohen, C.]]

OCA at 11:59, 26 July 2012

OCA — Thu, 26 Jul 2012 11:59:19 GMT

←Older revision		Revision as of 11:59, 26 July 2012
Line 1:		Line 1:
	[[Image:3bat.png\|left\|200px]]		[[Image:3bat.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3bat", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3bat\| PDB=3bat \| SCENE= }}		{{STRUCTURE_3bat\| PDB=3bat \| SCENE= }}

	===Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form===		===Crystal structure of the N-terminal region of the scallop myosin rod, monoclinic (P21) form===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18155233}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18155233 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18155233}}		{{ABSTRACT_PUBMED_18155233}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Myosin]]	+	*[[Myosin\|Myosin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18155233~~</ref><ref group="xtra">PMID:~~12867988~~</ref><ref group="xtra">PMID:~~17095604~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018155233</ref><ref group="xtra">PMID:012867988</ref><ref group="xtra">PMID:017095604</ref><references group="xtra"/>
	[[Category: Argopecten irradians, saccharomyces cerevisiae]]		[[Category: Argopecten irradians, saccharomyces cerevisiae]]
	[[Category: Brown, J H.]]		[[Category: Brown, J H.]]
Line 34:		Line 23:
	[[Category: Calmodulin-binding]]		[[Category: Calmodulin-binding]]
	[[Category: Contractile protein]]		[[Category: Contractile protein]]
-	[[Category: Cytoplasm]]
	[[Category: Disorder]]		[[Category: Disorder]]
	[[Category: Motor protein]]		[[Category: Motor protein]]

OCA: Protected "3bat" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 22:05:38 GMT

Protected "3bat" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:05, 14 March 2011

OCA at 22:05, 14 March 2011

OCA — Mon, 14 Mar 2011 22:05:36 GMT

←Older revision		Revision as of 22:05, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3bat.png\|left\|200px]]		[[Image:3bat.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~3BAT~~ is a 4 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Argopecten_irradians,_saccharomyces_cerevisiae Argopecten irradians, saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA].	+	[[3bat]] is a 4 chain structure of [[Myosin]] with sequence from [http://en.wikipedia.org/wiki/Argopecten_irradians,_saccharomyces_cerevisiae Argopecten irradians, saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAT OCA].
		+
		+	==See Also==
		+	*[[Myosin]]

	==Reference==		==Reference==
Line 40:		Line 42:
	[[Category: Salt link]]		[[Category: Salt link]]
	[[Category: Thick filament]]		[[Category: Thick filament]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:51:14 2009''