3bf5 - Revision history

OCA at 06:51, 25 January 2023

OCA — Wed, 25 Jan 2023 06:51:47 GMT

←Older revision		Revision as of 06:51, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='3bf5' size='340' side='right'caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>		<StructureSection load='3bf5' size='340' side='right'caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Theac Theac~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum_DSM_1728 Thermoplasma acidophilum DSM 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [https://pdbe.org/3bf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [https://pdbe.org/3bf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/NK_THEAC NK_THEAC] Nucleoside kinase with broad substrate specificity. Catalyzes the phosphorylation of a variety of nucleosides to the corresponding nucleoside 5'-mono-phosphate in the presence of phosphate donors and divalent cations. Displays the most efficient activity with guanosine, followed by inosine, cytidine, and adenosine. Negligible enzymatic activity is detected with thymidine, uridine, and 2-deoxyadenosine. ATP is the most efficient phosphate donor, but can also use GTP and ITP. Shows no sugar kinase activity, since it is unable to phosphorylate ribose, fructose-1-phosphate, or fructose-6-phosphate.<ref>PMID:23161756</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bf5 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bf5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Theac]]~~	+	[[Category: Thermoplasma acidophilum DSM 1728]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Putative ribokinase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 18:57, 20 October 2021

OCA — Wed, 20 Oct 2021 18:57:16 GMT

←Older revision		Revision as of 18:57, 20 October 2021
Line 3:		Line 3:
	<StructureSection load='3bf5' size='340' side='right'caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>		<StructureSection load='3bf5' size='340' side='right'caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Theac Theac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Theac Theac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [~~http~~://pdbe.org/3bf5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf5 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [https://pdbe.org/3bf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:48, 24 July 2019

OCA — Wed, 24 Jul 2019 07:48:52 GMT

←Older revision		Revision as of 07:48, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution==		==Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution==
-	<StructureSection load='3bf5' size='340' side='right' caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>	+	<StructureSection load='3bf5' size='340' side='right'caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Theac Theac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Theac Theac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Theac]]		[[Category: Theac]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 08:01, 25 October 2017

OCA — Wed, 25 Oct 2017 08:01:41 GMT

←Older revision		Revision as of 08:01, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution==		==Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution==
	<StructureSection load='3bf5' size='340' side='right' caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>		<StructureSection load='3bf5' size='340' side='right' caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://pdbe.org/3bf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://pdbe.org/3bf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf5 ProSAT], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 05:07, 8 February 2016

OCA — Mon, 08 Feb 2016 05:07:50 GMT

←Older revision		Revision as of 05:07, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3bf5' size='340' side='right' caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>		<StructureSection load='3bf5' size='340' side='right' caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Theac Theac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 ~~Thermoplasma acidophilum DSM 1728~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 THEAC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://pdbe.org/3bf5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bf5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermoplasma acidophilum dsm 1728~~]]	+	[[Category: Theac]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]

OCA at 09:50, 20 January 2015

OCA — Tue, 20 Jan 2015 09:50:08 GMT

←Older revision		Revision as of 09:50, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 Thermoplasma acidophilum DSM 1728])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 Thermoplasma acidophilum DSM 1728])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Thermoplasma acidophilum dsm 1728]]		[[Category: Thermoplasma acidophilum dsm 1728]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.]]~~	+	[[Category: Structural genomic]]
-	~~[[Category: 10640157~~]]	+
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: ~~Joint center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Putative ribokinase]]		[[Category: Putative ribokinase]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 21:36, 2 October 2014

OCA — Thu, 02 Oct 2014 21:36:22 GMT

←Older revision		Revision as of 21:36, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3bf5.png\|left\|200px]]~~	+	==Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution==
-		+	<StructureSection load='3bf5' size='340' side='right' caption='[[3bf5]], [[Resolution\|resolution]] 1.91Å' scene=''>
-	~~{{STRUCTURE_3bf5\| PDB=3bf5 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BF5 FirstGlance]. <br>
-	===Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~{{ABSTRACT_PUBMED_020613835}}~~	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">10640157, Ta0880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273075 Thermoplasma acidophilum DSM 1728])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3bf5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3bf5 TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA].	+	== Evolutionary Conservation ==
-		+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	==~~Reference~~==	+	Check<jmol>
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~020613835~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermoplasma acidophilum dsm 1728]]		[[Category: Thermoplasma acidophilum dsm 1728]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "3bf5" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:47:47 GMT

Protected "3bf5" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:47, 7 January 2013

OCA at 21:47, 7 January 2013

OCA — Mon, 07 Jan 2013 21:47:44 GMT

←Older revision		Revision as of 21:47, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3bf5.png\|left\|200px]]		[[Image:3bf5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3bf5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3bf5\| PDB=3bf5 \| SCENE= }}		{{STRUCTURE_3bf5\| PDB=3bf5 \| SCENE= }}

	===Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution===		===Crystal structure of putative ribokinase (10640157) from Thermoplasma acidophilum at 1.91 A resolution===

		+	{{ABSTRACT_PUBMED_020613835}}

	==About this Structure==		==About this Structure==
-	~~3BF5~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA].	+	[[3bf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:020613835</ref><references group="xtra"/>
	[[Category: Thermoplasma acidophilum dsm 1728]]		[[Category: Thermoplasma acidophilum dsm 1728]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
Line 25:		Line 22:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:45:04 2008''

OCA at 14:45, 16 November 2008

OCA — Sun, 16 Nov 2008 14:45:05 GMT

←Older revision		Revision as of 14:45, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3BF5 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA].	+	3BF5 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum_dsm_1728 Thermoplasma acidophilum dsm 1728]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF5 OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermoplasma acidophilum dsm 1728]]		[[Category: Thermoplasma acidophilum dsm 1728]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
Line 27:		Line 26:
	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 03~~:41:37 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:45:04 2008''