3bwz - Revision history

OCA at 12:17, 30 August 2023

OCA — Wed, 30 Aug 2023 12:17:47 GMT

←Older revision		Revision as of 12:17, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3bwz' size='340' side='right'caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='3bwz' size='340' side='right'caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~(in_press)_hungateiclostridium_cellulolyticum (in press) hungateiclostridium cellulolyticum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=EDO:~~1,2~~-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">scaB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 (in press) Hungateiclostridium cellulolyticum])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [https://pdbe.org/3bwz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [https://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [https://pdbe.org/3bwz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [https://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7WYN3_9FIRM Q7WYN3_9FIRM]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acetivibrio cellulolyticus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bayer, E]]	+	[[Category: Bayer E]]
-	[[Category: Frolow, F]]	+	[[Category: Frolow F]]
-	[[Category: Lamed, R]]	+	[[Category: Lamed R]]
-	[[Category: Noach, I]]	+	[[Category: Noach I]]
-	[[Category: Shimon~~, L J.W]]~~	+	[[Category: Shimon LJW]]
-	~~[[Category: Cellulosome]]~~	+
-	~~[[Category: Cohesins ii]]~~	+
-	~~[[Category: Structural protein~~]]	+

OCA at 08:27, 19 January 2022

OCA — Wed, 19 Jan 2022 08:27:51 GMT

←Older revision		Revision as of 08:27, 19 January 2022
Line 1:		Line 1:

	==Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation==		==Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation==
-	<StructureSection load='3bwz' size='340' side='right' caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='3bwz' size='340' side='right'caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/(in_press)_hungateiclostridium_cellulolyticum (in press) hungateiclostridium cellulolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/(in_press)_hungateiclostridium_cellulolyticum (in press) hungateiclostridium cellulolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 (in press) Hungateiclostridium cellulolyticum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 (in press) Hungateiclostridium cellulolyticum])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [~~http~~://pdbe.org/3bwz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [https://pdbe.org/3bwz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [https://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Bayer, E]]		[[Category: Bayer, E]]
	[[Category: Frolow, F]]		[[Category: Frolow, F]]

OCA at 13:41, 7 November 2018

OCA — Wed, 07 Nov 2018 13:41:44 GMT

←Older revision		Revision as of 13:41, 7 November 2018
Line 3:		Line 3:
	<StructureSection load='3bwz' size='340' side='right' caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='3bwz' size='340' side='right' caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Atcc_33288 Atcc 33288~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/(in_press)_hungateiclostridium_cellulolyticum (in press) hungateiclostridium cellulolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 ~~ATCC 33288~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 (in press) Hungateiclostridium cellulolyticum])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://pdbe.org/3bwz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://pdbe.org/3bwz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>
	</table>		</table>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwz_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwz_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 33288]]
	[[Category: Bayer, E]]		[[Category: Bayer, E]]
	[[Category: Frolow, F]]		[[Category: Frolow, F]]

OCA at 14:37, 11 August 2016

OCA — Thu, 11 Aug 2016 14:37:16 GMT

←Older revision		Revision as of 14:37, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation==		==Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation==
	<StructureSection load='3bwz' size='340' side='right' caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='3bwz' size='340' side='right' caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Acetivibrio_cellulolyticus Acetivibrio cellulolyticus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33288 Atcc 33288]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 ~~Acetivibrio cellulolyticus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 ATCC 33288])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://pdbe.org/3bwz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bwz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3bwz" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Acetivibrio cellulolyticus~~]]	+	[[Category: Atcc 33288]]
	[[Category: Bayer, E]]		[[Category: Bayer, E]]
	[[Category: Frolow, F]]		[[Category: Frolow, F]]

OCA at 08:16, 20 January 2015

OCA — Tue, 20 Jan 2015 08:16:00 GMT

←Older revision		Revision as of 08:16, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 Acetivibrio cellulolyticus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 Acetivibrio cellulolyticus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Acetivibrio cellulolyticus]]		[[Category: Acetivibrio cellulolyticus]]
-	[[Category: Bayer, E.]]	+	[[Category: Bayer, E]]
-	[[Category: Frolow, F.]]	+	[[Category: Frolow, F]]
-	[[Category: Lamed, R.]]	+	[[Category: Lamed, R]]
-	[[Category: Noach, I.]]	+	[[Category: Noach, I]]
-	[[Category: Shimon, L J.W.]]	+	[[Category: Shimon, L J.W]]
	[[Category: Cellulosome]]		[[Category: Cellulosome]]
	[[Category: Cohesins ii]]		[[Category: Cohesins ii]]
	[[Category: Structural protein]]		[[Category: Structural protein]]

OCA at 21:15, 2 October 2014

OCA — Thu, 02 Oct 2014 21:15:57 GMT

←Older revision		Revision as of 21:15, 2 October 2014
Line 1:		Line 1:
-	[[~~Image:~~3bwz.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation==
		+	<StructureSection load='3bwz' size='340' side='right' caption='[[3bwz]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tyj\|1tyj]], [[1zv9\|1zv9]], [[1g1k\|1g1k]], [[2bm3\|2bm3]], [[1anu\|1anu]], [[2zf9\|2zf9]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">scaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35830 Acetivibrio cellulolyticus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bwz RCSB], [http://www.ebi.ac.uk/pdbsum/3bwz PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwz_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cellulosome complexes comprise an intercalated set of multimodular dockerin-containing enzymatic subunits connected to cohesin-containing nonenzymatic subunits called scaffoldins. The adjoining modules in each cellulosomal subunit are interconnected by a variety of linker segments of different lengths and composition. The exact role of the cellulosomal linkers has yet to be described, although it is assumed that they contribute to the architecture and action of the cellulosome by providing the protein subunits with flexibility and by providing spacers between the enzymatic modules that could enhance interactions with the cellulose substrate. Here we present four crystal structures of Acetivibrio cellulolyticus cellulosomal type II cohesins with linker extensions. Two of the structures represent two different crystal forms (trigonal and orthorhombic) of the same N-terminal cohesin module (CohB1) together with its full (6-residue) native C-terminal linker, derived from scaffoldin B. The other two structures belong to the adjacent (second) cohesin module (CohB2), each of which was crystallized with the same 6-residue linker segment, but now positioned at the N-terminus and with either a truncated (5-residue) or a full-length (45-residue) C-terminal linker, respectively. Comparison between the two CohB1 structures revealed significant differences in the conformation of their equivalent C-terminal linker segment. In one crystal form a helical conformation was observed, as opposed to an extended conformation in the other. The CohB2 structures also displayed diverse conformations in their linker segments. In these structures, different linker conformations were observed in the individual molecules within the asymmetric unit of each structure. This conformational diversity implies that the linkers may adopt alternative conformations in their natural environment, consistent with varying environmental conditions. The findings suggest that linkers can play an important role in the assembly, dynamics and function of the cellulosomal components.

-	~~{{STRUCTURE_3bwz\| PDB=3bwz \| SCENE= }}~~	+	Intermodular linker flexibility revealed from crystal structures of adjacent cellulosomal cohesins of Acetivibrio cellulolyticus.,Noach I, Frolow F, Alber O, Lamed R, Shimon LJ, Bayer EA J Mol Biol. 2009 Aug 7;391(1):86-97. Epub 2009 Jun 6. PMID:19501595<ref>PMID:19501595</ref>

-	~~===Crystal structure~~ of the ~~type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19501595}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3bwz]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019501595<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Acetivibrio cellulolyticus]]		[[Category: Acetivibrio cellulolyticus]]
	[[Category: Bayer, E.]]		[[Category: Bayer, E.]]

OCA: Protected "3bwz" [edit=sysop:move=sysop]

OCA — Wed, 06 Feb 2013 13:18:39 GMT

Protected "3bwz" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:18, 6 February 2013

OCA at 13:18, 6 February 2013

OCA — Wed, 06 Feb 2013 13:18:35 GMT

←Older revision		Revision as of 13:18, 6 February 2013
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-	{{Seed}}
	[[Image:3bwz.png\|left\|200px]]		[[Image:3bwz.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3bwz", creates the "Structure Box" on the page.
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-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3bwz\| PDB=3bwz \| SCENE= }}		{{STRUCTURE_3bwz\| PDB=3bwz \| SCENE= }}

	===Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation===		===Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19501595}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19501595 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19501595}}		{{ABSTRACT_PUBMED_19501595}}

	==About this Structure==		==About this Structure==
-	~~3BWZ~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA].	+	[[3bwz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19501595~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019501595</ref><references group="xtra"/>
	[[Category: Acetivibrio cellulolyticus]]		[[Category: Acetivibrio cellulolyticus]]
	[[Category: Bayer, E.]]		[[Category: Bayer, E.]]
Line 33:		Line 21:
	[[Category: Cohesins ii]]		[[Category: Cohesins ii]]
	[[Category: Structural protein]]		[[Category: Structural protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 09:06:18 2009''

OCA at 06:06, 25 June 2009

OCA — Thu, 25 Jun 2009 06:06:21 GMT

←Older revision		Revision as of 06:06, 25 June 2009
Line 12:		Line 12:
	===Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation===		===Crystal structure of the type II cohesin module from the cellulosome of Acetivibrio cellulolyticus with an extended linker conformation===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19501595}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19501595 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19501595}}

	==About this Structure==		==About this Structure==
	3BWZ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA].		3BWZ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Acetivibrio_cellulolyticus Acetivibrio cellulolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWZ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19501595</ref><references group="xtra"/>
	[[Category: Acetivibrio cellulolyticus]]		[[Category: Acetivibrio cellulolyticus]]
	[[Category: Bayer, E.]]		[[Category: Bayer, E.]]
Line 25:		Line 34:
	[[Category: Structural protein]]		[[Category: Structural protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed~~ Jun ~~24 20:~~09:26 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 09:06:18 2009''

OCA at 17:04, 24 June 2009

OCA — Wed, 24 Jun 2009 17:04:49 GMT

←Older revision		Revision as of 17:04, 24 June 2009
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	{{Seed}}		{{Seed}}
-	[[Image:3bwz.~~jpg~~\|left\|200px]]	+	[[Image:3bwz.png\|left\|200px]]

	<!--		<!--
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	[[Category: Structural protein]]		[[Category: Structural protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 14 13~~:31:08 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 24 20:09:26 2009''