3c29 - Revision history

OCA at 12:20, 30 August 2023

OCA — Wed, 30 Aug 2023 12:20:21 GMT

←Older revision		Revision as of 12:20, 30 August 2023
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	<StructureSection load='3c29' size='340' side='right'caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3c29' size='340' side='right'caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bacteriophage_p1 Bacteriophage p1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C29 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_P1 Escherichia phage P1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C29 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max~~-~~height: 3em;'>[[2hof\|2hof]]~~, [[~~3c28~~\|~~3c28~~]]~~, [[4crx\|4crx]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~cre ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=10678 Bacteriophage P1])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [https://pdbe.org/3c29 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [https://www.ebi.ac.uk/pdbsum/3c29 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c29 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [https://pdbe.org/3c29 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [https://www.ebi.ac.uk/pdbsum/3c29 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c29 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1]] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.	+	[https://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacteriophage p1~~]]	+	[[Category: Escherichia phage P1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Duyne, G D.Van]]~~	+	[[Category: Ghosh K]]
-	[[Category: Ghosh, K]]	+	[[Category: Van Duyne GD]]
-	[[Category: ~~Di-aminopurine]]~~	+
-	~~[[Category: Dna integration]]~~	+
-	~~[[Category: Dna recombination]]~~	+
-	~~[[Category: Recombination-dna complex]]~~	+
-	~~[[Category: Synapsis~~]]	+

OCA at 07:40, 27 January 2022

OCA — Thu, 27 Jan 2022 07:40:24 GMT

←Older revision		Revision as of 07:40, 27 January 2022
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	==Cre-loxP Synaptic structure==		==Cre-loxP Synaptic structure==
-	<StructureSection load='3c29' size='340' side='right' caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3c29' size='340' side='right'caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacteriophage_p1 Bacteriophage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3C29 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteriophage_p1 Bacteriophage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C29 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Bacteriophage P1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Bacteriophage P1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [~~http~~://pdbe.org/3c29 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3c29 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3c29 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [https://pdbe.org/3c29 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [https://www.ebi.ac.uk/pdbsum/3c29 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c29 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1]] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.	+	[[https://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1]] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/3c29_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/3c29_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c29 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c29 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Resolvase 3D structures\|Resolvase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacteriophage p1]]		[[Category: Bacteriophage p1]]
		+	[[Category: Large Structures]]
	[[Category: Duyne, G D.Van]]		[[Category: Duyne, G D.Van]]
	[[Category: Ghosh, K]]		[[Category: Ghosh, K]]

OCA at 08:16, 25 October 2017

OCA — Wed, 25 Oct 2017 08:16:56 GMT

←Older revision		Revision as of 08:16, 25 October 2017
Line 1:		Line 1:
		+
	==Cre-loxP Synaptic structure==		==Cre-loxP Synaptic structure==
	<StructureSection load='3c29' size='340' side='right' caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3c29' size='340' side='right' caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Bacteriophage P1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Bacteriophage P1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://pdbe.org/3c29 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://pdbe.org/3c29 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3c29 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c29 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c29 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Resolvase\|Resolvase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 15:43, 7 February 2016

OCA — Sun, 07 Feb 2016 15:43:33 GMT

←Older revision		Revision as of 15:43, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3c29' size='340' side='right' caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3c29' size='340' side='right' caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_p1 Enterobacteria phage~~ p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C29 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteriophage_p1 Bacteriophage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C29 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~10678 Enterobacteria phage~~ P1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Bacteriophage P1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://pdbe.org/3c29 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c29 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage~~ p1]]	+	[[Category: Bacteriophage p1]]
	[[Category: Duyne, G D.Van]]		[[Category: Duyne, G D.Van]]
	[[Category: Ghosh, K]]		[[Category: Ghosh, K]]

OCA at 16:24, 24 December 2014

OCA — Wed, 24 Dec 2014 16:24:08 GMT

←Older revision		Revision as of 16:24, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C29 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C29 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Enterobacteria phage P1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Enterobacteria phage P1])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1]] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage p1]]		[[Category: Enterobacteria phage p1]]
-	[[Category: Duyne, G D.Van.]]	+	[[Category: Duyne, G D.Van]]
-	[[Category: Ghosh, K.]]	+	[[Category: Ghosh, K]]
-	[[Category: ~~6 di~~-aminopurine]]	+	[[Category: Di-aminopurine]]
	[[Category: Dna integration]]		[[Category: Dna integration]]
	[[Category: Dna recombination]]		[[Category: Dna recombination]]
	[[Category: Recombination-dna complex]]		[[Category: Recombination-dna complex]]
	[[Category: Synapsis]]		[[Category: Synapsis]]

OCA at 09:17, 29 September 2014

OCA — Mon, 29 Sep 2014 09:17:06 GMT

←Older revision		Revision as of 09:17, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3c29.png\|left\|200px]]~~	+	==Cre-loxP Synaptic structure==
-		+	<StructureSection load='3c29' size='340' side='right' caption='[[3c29]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_3c29\| PDB=3c29 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C29 FirstGlance]. <br>
-	===Cre-loxP Synaptic structure===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=1AP:2,6-DIAMINOPURINE+NUCLEOTIDE'>1AP</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hof\|2hof]], [[3c28\|3c28]], [[4crx\|4crx]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cre ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Enterobacteria phage P1])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c29 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c29 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3c29 RCSB], [http://www.ebi.ac.uk/pdbsum/3c29 PDBsum]</span></td></tr>
-	[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/3c29_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Resolvase\|Resolvase]]		*[[Resolvase\|Resolvase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Enterobacteria phage p1]]		[[Category: Enterobacteria phage p1]]
	[[Category: Duyne, G D.Van.]]		[[Category: Duyne, G D.Van.]]

OCA at 07:06, 20 October 2012

OCA — Sat, 20 Oct 2012 07:06:31 GMT

←Older revision		Revision as of 07:06, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3c29]] is a 8 chain structure ~~of [[Resolvase]]~~ with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA].	+	[[3c29]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA].

	==See Also==		==See Also==

OCA: Protected "3c29" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 15:18:10 GMT

Protected "3c29" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:18, 25 July 2012

OCA at 15:18, 25 July 2012

OCA — Wed, 25 Jul 2012 15:18:09 GMT

←Older revision		Revision as of 15:18, 25 July 2012
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-	{{Seed}}
	[[Image:3c29.png\|left\|200px]]		[[Image:3c29.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3c29", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3c29\| PDB=3c29 \| SCENE= }}		{{STRUCTURE_3c29\| PDB=3c29 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3C29~~ is a 8 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA].	+	[[3c29]] is a 8 chain structure of [[Resolvase]] with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C29 OCA].
		+
		+	==See Also==
		+	*[[Resolvase\|Resolvase]]
	[[Category: Enterobacteria phage p1]]		[[Category: Enterobacteria phage p1]]
	[[Category: Duyne, G D.Van.]]		[[Category: Duyne, G D.Van.]]
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	[[Category: Dna integration]]		[[Category: Dna integration]]
	[[Category: Dna recombination]]		[[Category: Dna recombination]]
-	[[Category: Recombination/dna complex]]	+	[[Category: Recombination-dna complex]]
	[[Category: Synapsis]]		[[Category: Synapsis]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 21:34:00 2009''

OCA at 18:34, 10 June 2009

OCA — Wed, 10 Jun 2009 18:34:01 GMT

←Older revision		Revision as of 18:34, 10 June 2009
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	{{Seed}}		{{Seed}}
-	[[Image:3c29.~~jpg~~\|left\|200px]]	+	[[Image:3c29.png\|left\|200px]]

	<!--		<!--
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	[[Category: Synapsis]]		[[Category: Synapsis]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Feb 18 09~~:20:10 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 21:34:00 2009''