3ce9 - Revision history

OCA at 11:29, 1 February 2023

OCA — Wed, 01 Feb 2023 11:29:48 GMT

←Older revision		Revision as of 11:29, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>		<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Cloab Cloab~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=~~PEG~~:~~DI(HYDROXYETHYL)ETHER~~'>~~PEG~~</scene>, <scene name='pdbligand=ZN:~~ZINC+ION~~'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [https://pdbe.org/3ce9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [https://pdbe.org/3ce9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q97IL4_CLOAB Q97IL4_CLOAB]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cloab~~]]	+	[[Category: Clostridium acetobutylicum ATCC 824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: 3-dehydroquinate synthase]]
-	[[Category: Glycerol dehydrogenase]]
-	[[Category: Jcsg]]
-	[[Category: Np_348253 1]]
-	[[Category: Oxidoreductase]]
-	[[Category: PSI, Protein structure initiative]]

OCA at 07:52, 27 January 2022

OCA — Thu, 27 Jan 2022 07:52:52 GMT

←Older revision		Revision as of 07:52, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>		<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [~~http~~://pdbe.org/3ce9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [https://pdbe.org/3ce9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:52, 24 July 2019

OCA — Wed, 24 Jul 2019 07:52:04 GMT

←Older revision		Revision as of 07:52, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==		==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==
-	<StructureSection load='3ce9' size='340' side='right' caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>	+	<StructureSection load='3ce9' size='340' side='right'caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Cloab]]		[[Category: Cloab]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: 3-dehydroquinate synthase]]		[[Category: 3-dehydroquinate synthase]]

OCA at 08:25, 25 October 2017

OCA — Wed, 25 Oct 2017 08:25:48 GMT

←Older revision		Revision as of 08:25, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==		==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==
	<StructureSection load='3ce9' size='340' side='right' caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>		<StructureSection load='3ce9' size='340' side='right' caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://pdbe.org/3ce9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://pdbe.org/3ce9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ce9 ProSAT], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 02:55, 7 February 2016

OCA — Sun, 07 Feb 2016 02:55:56 GMT

←Older revision		Revision as of 02:55, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3ce9' size='340' side='right' caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>		<StructureSection load='3ce9' size='340' side='right' caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 ~~Clostridium acetobutylicum ATCC 824~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://pdbe.org/3ce9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ce9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clostridium acetobutylicum atcc 824~~]]	+	[[Category: Cloab]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: 3-dehydroquinate synthase]]		[[Category: 3-dehydroquinate synthase]]

OCA at 08:19, 20 January 2015

OCA — Tue, 20 Jan 2015 08:19:23 GMT

←Older revision		Revision as of 08:19, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 Clostridium acetobutylicum ATCC 824])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 Clostridium acetobutylicum ATCC 824])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium acetobutylicum atcc 824]]		[[Category: Clostridium acetobutylicum atcc 824]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: 3-dehydroquinate synthase]]		[[Category: 3-dehydroquinate synthase]]
	[[Category: Glycerol dehydrogenase]]		[[Category: Glycerol dehydrogenase]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Np_348253 1]]		[[Category: Np_348253 1]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 21:19, 2 October 2014

OCA — Thu, 02 Oct 2014 21:19:02 GMT

←Older revision		Revision as of 21:19, 2 October 2014
Line 1:		Line 1:
-	~~[[Image:3ce9.png\|left\|200px]]~~	+	==Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution==
-		+	<StructureSection load='3ce9' size='340' side='right' caption='[[3ce9]], [[Resolution\|resolution]] 2.37Å' scene=''>
-	~~{{STRUCTURE_3ce9\| PDB=3ce9 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CE9 FirstGlance]. <br>
-	===Crystal structure of glycerol dehydrogenase (NP_348253.1) from Clostridium acetobutylicum at 2.37 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_348253.1, CA_C1626 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 Clostridium acetobutylicum ATCC 824])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ce9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ce9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ce9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ce9 PDBsum], [http://www.topsan.org/Proteins/JCSG/3ce9 TOPSAN]</span></td></tr>
-	[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ce/3ce9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Clostridium acetobutylicum atcc 824]]		[[Category: Clostridium acetobutylicum atcc 824]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "3ce9" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 18:10:54 GMT

Protected "3ce9" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:10, 7 January 2013

OCA at 18:10, 7 January 2013

OCA — Mon, 07 Jan 2013 18:10:51 GMT

←Older revision		Revision as of 18:10, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3ce9.png\|left\|200px]]		[[Image:3ce9.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ce9", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ce9\| PDB=3ce9 \| SCENE= }}		{{STRUCTURE_3ce9\| PDB=3ce9 \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3CE9~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].	+	[[3ce9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].
	[[Category: Clostridium acetobutylicum atcc 824]]		[[Category: Clostridium acetobutylicum atcc 824]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
Line 26:		Line 19:
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:11:17 2008''

OCA at 08:11, 16 November 2008

OCA — Sun, 16 Nov 2008 08:11:18 GMT

←Older revision		Revision as of 08:11, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3CE9 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].	+	3CE9 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CE9 OCA].
	[[Category: Clostridium acetobutylicum atcc 824]]		[[Category: Clostridium acetobutylicum atcc 824]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: 3-dehydroquinate synthase]]		[[Category: 3-dehydroquinate synthase]]
Line 28:		Line 27:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 15~~:49:50 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:11:17 2008''