3crj - Revision history

OCA at 07:42, 2 February 2022

OCA — Wed, 02 Feb 2022 07:42:53 GMT

←Older revision		Revision as of 07:42, 2 February 2022
Line 1:		Line 1:

	==Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049==		==Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049==
-	<StructureSection load='3crj' size='340' side='right' caption='[[3crj]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='3crj' size='340' side='right'caption='[[3crj]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3crj]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Halma Halma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3crj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Halma Halma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CRJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tetR, pNG7308 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tetR, pNG7308 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3crj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3crj OCA], [~~http~~://pdbe.org/3crj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3crj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3crj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3crj ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/3crj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3crj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3crj OCA], [https://pdbe.org/3crj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3crj RCSB], [https://www.ebi.ac.uk/pdbsum/3crj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3crj ProSAT], [https://www.topsan.org/Proteins/MCSG/3crj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3crj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3crj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Tetracycline repressor protein 3D structures\|Tetracycline repressor protein 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Halma]]		[[Category: Halma]]
		+	[[Category: Large Structures]]
	[[Category: Freeman, L]]		[[Category: Freeman, L]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 13:26, 7 November 2018

OCA — Wed, 07 Nov 2018 13:26:19 GMT

←Older revision		Revision as of 13:26, 7 November 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cr/3crj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cr/3crj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 12:38, 11 August 2016

OCA — Thu, 11 Aug 2016 12:38:20 GMT

←Older revision		Revision as of 12:38, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049==		==Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049==
	<StructureSection load='3crj' size='340' side='right' caption='[[3crj]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3crj' size='340' side='right' caption='[[3crj]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3crj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3crj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Halma Halma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CRJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tetR, pNG7308 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 ~~Haloarcula marismortui ATCC 43049~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tetR, pNG7308 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3crj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3crj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3crj RCSB], [http://www.ebi.ac.uk/pdbsum/3crj PDBsum], [http://www.topsan.org/Proteins/MCSG/3crj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3crj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3crj OCA], [http://pdbe.org/3crj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3crj RCSB], [http://www.ebi.ac.uk/pdbsum/3crj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3crj ProSAT], [http://www.topsan.org/Proteins/MCSG/3crj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3crj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Haloarcula marismortui atcc 43049~~]]	+	[[Category: Halma]]
	[[Category: Freeman, L]]		[[Category: Freeman, L]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]
Line 28:		Line 29:
	[[Category: Apc88200]]		[[Category: Apc88200]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
		+	[[Category: Haloarcula marismortui atcc 43049]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 10:12, 20 January 2015

OCA — Tue, 20 Jan 2015 10:12:17 GMT

←Older revision		Revision as of 10:12, 20 January 2015
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Haloarcula marismortui atcc 43049]]		[[Category: Haloarcula marismortui atcc 43049]]
-	[[Category: Freeman, L.]]	+	[[Category: Freeman, L]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tan, K.]]	+	[[Category: Tan, K]]
-	[[Category: Zhou, M.]]	+	[[Category: Zhou, M]]
	[[Category: Apc88200]]		[[Category: Apc88200]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
-	[[Category: Haloarcula marismortui atcc 43049]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Midwest center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Tetr]]		[[Category: Tetr]]
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]

OCA at 05:57, 10 October 2014

OCA — Fri, 10 Oct 2014 05:57:00 GMT

←Older revision		Revision as of 05:57, 10 October 2014
Line 1:		Line 1:
-	~~[[Image:3crj.png\|left\|200px]]~~	+	==Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049==
-		+	<StructureSection load='3crj' size='340' side='right' caption='[[3crj]], [[Resolution\|resolution]] 2.60Å' scene=''>
-	~~{{STRUCTURE_3crj\| PDB=3crj \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3crj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CRJ FirstGlance]. <br>
-	===Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tetR, pNG7308 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 Haloarcula marismortui ATCC 43049])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3crj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3crj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3crj RCSB], [http://www.ebi.ac.uk/pdbsum/3crj PDBsum], [http://www.topsan.org/Proteins/MCSG/3crj TOPSAN]</span></td></tr>
-	[[3crj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cr/3crj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Haloarcula marismortui atcc 43049]]		[[Category: Haloarcula marismortui atcc 43049]]
	[[Category: Freeman, L.]]		[[Category: Freeman, L.]]

OCA: Protected "3crj" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 22:01:11 GMT

Protected "3crj" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:01, 7 January 2013

OCA at 22:01, 7 January 2013

OCA — Mon, 07 Jan 2013 22:01:09 GMT

←Older revision		Revision as of 22:01, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3crj.png\|left\|200px]]		[[Image:3crj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3crj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3crj\| PDB=3crj \| SCENE= }}		{{STRUCTURE_3crj\| PDB=3crj \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3CRJ~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA].	+	[[3crj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA].
	[[Category: Haloarcula marismortui atcc 43049]]		[[Category: Haloarcula marismortui atcc 43049]]
	[[Category: Freeman, L.]]		[[Category: Freeman, L.]]
Line 26:		Line 19:
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: Midwest center for structural genomic]]		[[Category: Midwest center for structural genomic]]
-	[[Category: Plasmid]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi-2]]		[[Category: Psi-2]]
Line 34:		Line 26:
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:03:47 2008''

OCA at 15:03, 16 November 2008

OCA — Sun, 16 Nov 2008 15:03:48 GMT

←Older revision		Revision as of 15:03, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3CRJ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA].	+	3CRJ is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA].
	[[Category: Haloarcula marismortui atcc 43049]]		[[Category: Haloarcula marismortui atcc 43049]]
-	[[Category: Single protein]]
	[[Category: Freeman, L.]]		[[Category: Freeman, L.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
Line 36:		Line 35:
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 04~~:21:15 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:03:47 2008''

OCA at 01:21, 29 September 2008

OCA — Mon, 29 Sep 2008 01:21:25 GMT

←Older revision		Revision as of 01:21, 29 September 2008
Line 1:		Line 1:
-	[[Image:3crj.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:3crj.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_3crj\| PDB=3crj \| SCENE= }}		{{STRUCTURE_3crj\| PDB=3crj \| SCENE= }}

-	~~'''~~Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049~~'''~~	+	===Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049===


Line 34:		Line 35:
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Apr 24 09~~:55:16 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 04:21:15 2008''