3cwh - Revision history

OCA at 12:34, 30 August 2023

OCA — Wed, 30 Aug 2023 12:34:02 GMT

←Older revision		Revision as of 12:34, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3cwh' size='340' side='right'caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3cwh' size='340' side='right'caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cwh]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3CWH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cwh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CWH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=XUL:D-XYLULOSE'>XUL</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=XUL:D-XYLULOSE'>XUL</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [https://pdbe.org/3cwh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [https://www.ebi.ac.uk/pdbsum/3cwh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cwh ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [~~http~~://pdbe.org/3cwh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3cwh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3cwh ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.	+	[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 31:

	==See Also==		==See Also==
-	*[[D-xylose isomerase\|D-xylose isomerase]]	+	*[[D-xylose isomerase 3D structures\|D-xylose isomerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 39:		Line 38:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
-	~~[[Category: Xylose isomerase]]~~	+	[[Category: Glusker JP]]
-	[[Category: Glusker~~, J P~~]]	+	[[Category: Kovalevsky AY]]
-	[[Category: Kovalevsky~~, A Y~~]]	+	[[Category: Langan P]]
-	[[Category: Langan, P]]	+
-	~~[[Category: Carbohydrate metabolism]]~~	+
-	~~[[Category: Enzyme-product complex]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Magnesium]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Pentose shunt]]~~	+
-	~~[[Category: Xylose metabolism~~]]	+

OCA at 10:30, 12 August 2020

OCA — Wed, 12 Aug 2020 10:30:16 GMT

←Older revision		Revision as of 10:30, 12 August 2020
Line 1:		Line 1:

	==D-xylose Isomerase in complex with linear product, per-deuterated xylulose==		==D-xylose Isomerase in complex with linear product, per-deuterated xylulose==
-	<StructureSection load='3cwh' size='340' side='right' caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3cwh' size='340' side='right'caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cwh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CWH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cwh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3CWH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=XUL:D-XYLULOSE'>XUL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=XUL:D-XYLULOSE'>XUL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://pdbe.org/3cwh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cwh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://pdbe.org/3cwh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cwh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]

OCA at 13:48, 7 November 2018

OCA — Wed, 07 Nov 2018 13:48:00 GMT

←Older revision		Revision as of 13:48, 7 November 2018
Line 1:		Line 1:
		+
	==D-xylose Isomerase in complex with linear product, per-deuterated xylulose==		==D-xylose Isomerase in complex with linear product, per-deuterated xylulose==
	<StructureSection load='3cwh' size='340' side='right' caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3cwh' size='340' side='right' caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://pdbe.org/3cwh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://pdbe.org/3cwh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cwh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/3cwh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/3cwh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 11:53, 9 February 2016

OCA — Tue, 09 Feb 2016 11:53:21 GMT

←Older revision		Revision as of 11:53, 9 February 2016
Line 6:		Line 6:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://pdbe.org/3cwh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cwh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3cwh" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 06:38, 25 December 2014

OCA — Thu, 25 Dec 2014 06:38:36 GMT

←Older revision		Revision as of 06:38, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]
-	[[Category: Glusker, J P.]]	+	[[Category: Glusker, J P]]
-	[[Category: Kovalevsky, A Y.]]	+	[[Category: Kovalevsky, A Y]]
-	[[Category: Langan, P.]]	+	[[Category: Langan, P]]
	[[Category: Carbohydrate metabolism]]		[[Category: Carbohydrate metabolism]]
	[[Category: Enzyme-product complex]]		[[Category: Enzyme-product complex]]

OCA at 09:22, 5 November 2014

OCA — Wed, 05 Nov 2014 09:22:53 GMT

←Older revision		Revision as of 09:22, 5 November 2014
Line 1:		Line 1:
-	[[~~Image:~~3cwh.~~png~~\|~~left~~\|200px]]	+	==D-xylose Isomerase in complex with linear product, per-deuterated xylulose==
		+	<StructureSection load='3cwh' size='340' side='right' caption='[[3cwh]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3cwh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CWH FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OH:HYDROXIDE+ION'>OH</scene>, <scene name='pdbligand=XUL:D-XYLULOSE'>XUL</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gve\|2gve]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cwh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cwh RCSB], [http://www.ebi.ac.uk/pdbsum/3cwh PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/3cwh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The time-of-flight neutron Laue technique has been used to determine the location of hydrogen atoms in the enzyme d-xylose isomerase (XI). The neutron structure of crystalline XI with bound product, d-xylulose, shows, unexpectedly, that O5 of d-xylulose is not protonated but is hydrogen-bonded to doubly protonated His54. Also, Lys289, which is neutral in native XI, is protonated (positively charged), while the catalytic water in native XI has become activated to a hydroxyl anion which is in the proximity of C1 and C2, the molecular site of isomerization of xylose. These findings impact our understanding of the reaction mechanism.

-	~~{{STRUCTURE_3cwh\| PDB=3cwh \| SCENE= }}~~	+	Hydrogen location in stages of an enzyme-catalyzed reaction: time-of-flight neutron structure of D-xylose isomerase with bound D-xylulose.,Kovalevsky AY, Katz AK, Carrell HL, Hanson L, Mustyakimov M, Fisher SZ, Coates L, Schoenborn BP, Bunick GJ, Glusker JP, Langan P Biochemistry. 2008 Jul 22;47(29):7595-7. Epub 2008 Jun 26. PMID:18578508<ref>PMID:18578508</ref>

-	~~===D-xylose Isomerase in complex with linear product~~, ~~per-deuterated xylulose===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18578508}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3cwh]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA].~~	+

	==See Also==		==See Also==
	*[[D-xylose isomerase\|D-xylose isomerase]]		*[[D-xylose isomerase\|D-xylose isomerase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:018578508<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]

OCA: Protected "3cwh" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 23:05:41 GMT

Protected "3cwh" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:05, 7 January 2013

OCA at 23:05, 7 January 2013

OCA — Mon, 07 Jan 2013 23:05:39 GMT

←Older revision		Revision as of 23:05, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3cwh.png\|left\|200px]]		[[Image:3cwh.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3cwh", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3cwh\| PDB=3cwh \| SCENE= }}		{{STRUCTURE_3cwh\| PDB=3cwh \| SCENE= }}

	===D-xylose Isomerase in complex with linear product, per-deuterated xylulose===		===D-xylose Isomerase in complex with linear product, per-deuterated xylulose===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18578508}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18578508 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18578508}}		{{ABSTRACT_PUBMED_18578508}}

	==About this Structure==		==About this Structure==
-	~~3CWH~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA].	+	[[3cwh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA].
		+
		+	==See Also==
		+	*[[D-xylose isomerase\|D-xylose isomerase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18578508~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018578508</ref><references group="xtra"/>
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]
Line 30:		Line 21:
	[[Category: Langan, P.]]		[[Category: Langan, P.]]
	[[Category: Carbohydrate metabolism]]		[[Category: Carbohydrate metabolism]]
-	[[Category: Cytoplasm]]
	[[Category: Enzyme-product complex]]		[[Category: Enzyme-product complex]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
Line 37:		Line 27:
	[[Category: Pentose shunt]]		[[Category: Pentose shunt]]
	[[Category: Xylose metabolism]]		[[Category: Xylose metabolism]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:34:25 2009''

OCA at 07:34, 17 February 2009

OCA — Tue, 17 Feb 2009 07:34:27 GMT

←Older revision		Revision as of 07:34, 17 February 2009
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3cwh.~~jpg~~\|left\|200px]]	+	[[Image:3cwh.png\|left\|200px]]

	<!--		<!--
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	3CWH is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA].	+	3CWH is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA].

	==Reference==		==Reference==
-	Hydrogen location in stages of an enzyme-catalyzed reaction: time-of-flight neutron structure of D-xylose isomerase with bound D-xylulose., Kovalevsky AY, Katz AK, Carrell HL, Hanson L, Mustyakimov M, Fisher SZ, Coates L, Schoenborn BP, Bunick GJ, Glusker JP, Langan P, Biochemistry. 2008 Jul 22;47(29):7595-7. Epub 2008 Jun 26. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18578508 18578508]~~	+	<ref group="xtra">PMID:18578508</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Streptomyces rubiginosus]]		[[Category: Streptomyces rubiginosus]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]
Line 39:		Line 38:
	[[Category: Xylose metabolism]]		[[Category: Xylose metabolism]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Aug 6 13~~:00:~~35 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:34:25 2009''

OCA at 10:00, 6 August 2008

OCA — Wed, 06 Aug 2008 10:00:36 GMT

←Older revision		Revision as of 10:00, 6 August 2008
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3cwh.jpg\|left\|200px]]

-	The ~~entry 3cwh~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3cwh", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3cwh\| PDB=3cwh \| SCENE= }}

-	~~Authors: Kovalevsky~~, ~~A.Y., Katz, A.K., Carrell, H.L., Hanson, L., Mustyakimov, M., Fisher, S.Z., Coates, L., Schoenborn, B.P., Bunick, G.J., Glusker, J.P., Langan, P.~~	+	===D-xylose Isomerase in complex with linear product, per-deuterated xylulose===

-	Description: D-xylose Isomerase in complex with linear product, per-deuterated xylulose

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jul 23 12~~:12:18 2008''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_18578508}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 18578508 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_18578508}}
		+
		+	==About this Structure==
		+	3CWH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CWH OCA].
		+
		+	==Reference==
		+	Hydrogen location in stages of an enzyme-catalyzed reaction: time-of-flight neutron structure of D-xylose isomerase with bound D-xylulose., Kovalevsky AY, Katz AK, Carrell HL, Hanson L, Mustyakimov M, Fisher SZ, Coates L, Schoenborn BP, Bunick GJ, Glusker JP, Langan P, Biochemistry. 2008 Jul 22;47(29):7595-7. Epub 2008 Jun 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18578508 18578508]
		+	[[Category: Single protein]]
		+	[[Category: Streptomyces rubiginosus]]
		+	[[Category: Xylose isomerase]]
		+	[[Category: Glusker, J P.]]
		+	[[Category: Kovalevsky, A Y.]]
		+	[[Category: Langan, P.]]
		+	[[Category: Carbohydrate metabolism]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Enzyme-product complex]]
		+	[[Category: Isomerase]]
		+	[[Category: Magnesium]]
		+	[[Category: Metal-binding]]
		+	[[Category: Pentose shunt]]
		+	[[Category: Xylose metabolism]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 6 13:00:35 2008''